Wall clock time and date at job start Fri Apr 10 2020 20:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99796 * 2 1 4 4 C 1.50697 * 119.99824 * 179.97438 * 2 1 3 5 5 C 1.53003 * 109.46897 * 95.00252 * 4 2 1 6 6 H 1.08994 * 109.46862 * 304.99327 * 5 4 2 7 7 C 1.52994 * 109.47333 * 64.99775 * 5 4 2 8 8 C 1.50703 * 109.46709 * 184.99628 * 5 4 2 9 9 O 1.21282 * 120.00219 * 0.02562 * 8 5 4 10 10 N 1.34777 * 119.99667 * 179.97438 * 8 5 4 11 11 C 1.46506 * 120.00112 * 173.94788 * 10 8 5 12 12 C 1.52997 * 109.47486 * 184.88303 * 11 10 8 13 13 C 1.52998 * 109.47056 * 178.87656 * 12 11 10 14 14 C 1.52997 * 115.55154 * 40.02640 * 13 12 11 15 15 N 1.46500 * 109.46792 * 65.20462 * 14 13 12 16 16 C 1.36938 * 119.99903 * 185.11494 * 15 14 13 17 17 H 1.07996 * 120.00152 * 4.91573 * 16 15 14 18 18 C 1.38813 * 119.99981 * 184.91402 * 16 15 14 19 19 N 1.31621 * 119.99835 * 183.51853 * 18 16 15 20 20 Si 1.86801 * 120.00090 * 3.51410 * 18 16 15 21 21 H 1.48504 * 109.46830 * 91.24910 * 20 18 16 22 22 H 1.48499 * 109.47164 * 211.24559 * 20 18 16 23 23 H 1.48501 * 109.47244 * 331.24928 * 20 18 16 24 24 C 1.53007 * 117.49757 * 254.32094 * 13 12 11 25 25 C 1.53005 * 117.49559 * 185.70095 * 13 12 11 26 26 H 1.08001 * 120.00188 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00344 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46894 * 269.99901 * 3 2 1 29 29 H 1.09003 * 109.46960 * 30.00272 * 3 2 1 30 30 H 1.09000 * 109.46722 * 150.00088 * 3 2 1 31 31 H 1.08998 * 109.47402 * 334.99828 * 4 2 1 32 32 H 1.09001 * 109.47222 * 214.99866 * 4 2 1 33 33 H 1.08998 * 109.47477 * 179.97438 * 7 5 4 34 34 H 1.08993 * 109.47147 * 300.00021 * 7 5 4 35 35 H 1.09003 * 109.46976 * 59.99946 * 7 5 4 36 36 H 0.97001 * 120.00333 * 353.95761 * 10 8 5 37 37 H 1.09006 * 109.46903 * 304.88950 * 11 10 8 38 38 H 1.09003 * 109.46910 * 64.87825 * 11 10 8 39 39 H 1.08995 * 109.46650 * 298.87636 * 12 11 10 40 40 H 1.09005 * 109.46865 * 58.87674 * 12 11 10 41 41 H 1.09000 * 109.47277 * 185.20020 * 14 13 12 42 42 H 1.08992 * 109.47243 * 305.20499 * 14 13 12 43 43 H 0.96996 * 120.00359 * 5.11127 * 15 14 13 44 44 H 0.96998 * 119.99638 * 179.97438 * 19 18 16 45 45 H 1.09003 * 117.49619 * 359.97438 * 24 13 12 46 46 H 1.09002 * 117.49792 * 145.02156 * 24 13 12 47 47 H 1.09005 * 117.49429 * 214.97858 * 25 13 12 48 48 H 1.09002 * 117.50076 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 1 1.5245 -1.7042 -2.0466 7 6 3.4045 -0.6532 -2.0042 8 6 3.0717 -3.0468 -1.4482 9 8 3.2243 -3.6546 -0.4098 10 7 3.4773 -3.5901 -2.6130 11 6 4.2216 -4.8521 -2.6128 12 6 4.6642 -5.1835 -4.0393 13 6 5.4655 -6.4869 -4.0349 14 6 4.9339 -7.5851 -3.1118 15 7 3.6203 -8.0279 -3.5859 16 6 2.8990 -8.9347 -2.8560 17 1 3.2612 -9.2633 -1.8932 18 6 1.7022 -9.4316 -3.3539 19 7 0.9746 -10.2496 -2.6232 20 14 1.1244 -8.9391 -5.0606 21 1 1.6277 -9.9198 -6.0557 22 1 -0.3601 -8.9180 -5.0937 23 1 1.6462 -7.5882 -5.3893 24 6 6.9818 -6.3846 -4.2116 25 6 6.1134 -6.9222 -5.3508 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 2.2451 1.6197 -1.0276 29 1 1.4743 2.0647 0.5139 30 1 3.0159 1.1747 0.5138 31 1 1.4386 -2.0852 0.4353 32 1 2.9742 -1.1986 0.5900 33 1 3.6641 -0.9237 -3.0277 34 1 2.9385 0.3320 -1.9955 35 1 4.3074 -0.6336 -1.3938 36 1 3.2766 -3.1456 -3.4515 37 1 5.0990 -4.7563 -1.9730 38 1 3.5826 -5.6506 -2.2358 39 1 3.7861 -5.2989 -4.6745 40 1 5.2869 -4.3754 -4.4234 41 1 5.6245 -8.4284 -3.1151 42 1 4.8417 -7.1949 -2.0983 43 1 3.2615 -7.6788 -4.4166 44 1 0.1382 -10.5964 -2.9710 45 1 7.4085 -5.3887 -4.3314 46 1 7.6010 -7.0998 -3.6700 47 1 6.1613 -7.9912 -5.5587 48 1 5.9685 -6.2803 -6.2197 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166745749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:29 Heat of formation + Delta-G solvation = -1.595799 kcal Electronic energy + Delta-G solvation = -23882.451434 eV Core-core repulsion = 20552.321979 eV Total energy + Delta-G solvation = -3330.129455 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.96282 -38.46274 -36.95082 -34.76508 -34.04334 -32.99379 -31.11273 -29.92105 -28.13424 -26.61533 -26.24099 -24.40074 -22.65153 -22.24766 -21.80558 -20.14648 -18.75651 -18.53042 -17.45095 -16.89258 -16.06471 -15.76463 -15.10010 -15.08025 -14.64378 -14.52188 -14.27495 -14.04308 -13.80896 -13.43997 -13.22891 -13.11709 -12.60523 -12.44850 -12.36522 -12.25963 -11.88958 -11.83078 -11.57578 -11.45441 -11.40134 -11.19015 -11.12624 -11.05206 -10.89494 -10.70974 -10.16583 -9.88131 -9.69360 -9.57836 -9.45197 -9.16613 -8.86617 -8.83945 -7.17452 -5.72909 -3.07813 1.99577 2.76316 3.27634 3.36687 3.41325 3.46154 3.94162 4.48366 4.61667 4.63292 4.69452 4.87239 4.89390 4.91366 4.96243 5.05793 5.17177 5.24280 5.28612 5.31691 5.43338 5.49911 5.54591 5.56059 5.62599 5.67208 5.72497 5.74949 5.77114 5.78656 5.89610 5.96732 6.03602 6.08211 6.22982 6.29211 6.33646 6.42384 6.44480 6.56696 6.67378 6.70469 6.76026 7.60000 8.05324 8.35045 8.46587 9.26479 9.98252 10.19408 11.45716 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.013688 B = 0.003697 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.094056 B = 7572.547969 C = 8864.811855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.068 4.068 5 C -0.104 4.104 6 H 0.096 0.904 7 C -0.147 4.147 8 C 0.513 3.487 9 O -0.535 6.535 10 N -0.729 5.729 11 C 0.117 3.883 12 C -0.085 4.085 13 C -0.127 4.127 14 C 0.189 3.811 15 N -0.751 5.751 16 C -0.241 4.241 17 H 0.089 0.911 18 C 0.004 3.996 19 N -0.934 5.934 20 Si 0.886 3.114 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.279 1.279 24 C -0.171 4.171 25 C -0.171 4.171 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.396 0.604 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.024 0.976 42 H 0.038 0.962 43 H 0.362 0.638 44 H 0.259 0.741 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.764 23.564 -2.159 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.124 4.124 3 C -0.178 4.178 4 C -0.106 4.106 5 C -0.126 4.126 6 H 0.114 0.886 7 C -0.204 4.204 8 C 0.299 3.701 9 O -0.411 6.411 10 N -0.381 5.381 11 C -0.006 4.006 12 C -0.122 4.122 13 C -0.128 4.128 14 C 0.062 3.938 15 N -0.396 5.396 16 C -0.371 4.371 17 H 0.107 0.893 18 C -0.191 4.191 19 N -0.582 5.582 20 Si 0.717 3.283 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.206 1.206 24 C -0.209 4.209 25 C -0.208 4.208 26 H 0.117 0.883 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.229 0.771 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.042 0.958 42 H 0.056 0.944 43 H 0.195 0.805 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.115 0.885 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.842 22.941 -1.204 23.970 hybrid contribution -0.709 0.394 -1.738 1.918 sum 6.133 23.335 -2.942 24.307 Atomic orbital electron populations 1.23740 0.95285 1.01932 1.02361 1.21744 0.95368 0.95634 0.99629 1.20998 1.00262 0.94530 1.01961 1.20514 1.00872 0.94345 0.94848 1.21276 0.99918 0.92478 0.98895 0.88615 1.21927 0.98938 0.98848 1.00735 1.20587 0.78444 0.87429 0.83681 1.90731 1.55219 1.62949 1.32197 1.46024 1.58000 1.25439 1.08590 1.21507 0.96378 0.85629 0.97060 1.21180 0.99624 0.95091 0.96353 1.21657 0.93735 0.97238 1.00150 1.20217 0.87302 0.91766 0.94516 1.42668 1.17404 1.52595 1.26977 1.19065 1.01455 1.15496 1.01049 0.89290 1.24679 0.97394 0.99201 0.97875 1.69711 1.15061 1.36502 1.36930 0.86519 0.77701 0.77969 0.86074 1.21205 1.21893 1.20589 1.23027 0.92813 1.02138 1.02926 1.22965 1.04077 1.01790 0.91942 0.88315 0.88589 0.91232 0.92076 0.91751 0.90228 0.90579 0.92307 0.90933 0.92091 0.77075 0.91636 0.89268 0.91086 0.91968 0.95777 0.94407 0.80487 0.93132 0.89190 0.88751 0.88460 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 13.89 29.01 0.40 -1.31 16 2 C -0.12 -1.10 4.93 -101.07 -0.50 -1.60 16 3 C -0.12 -0.83 9.01 36.01 0.32 -0.50 16 4 C -0.07 -0.73 4.22 -27.88 -0.12 -0.85 16 5 C -0.10 -1.07 2.71 -91.77 -0.25 -1.32 16 6 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 7 C -0.15 -1.13 8.65 37.15 0.32 -0.81 16 8 C 0.51 7.31 7.15 -10.98 -0.08 7.23 16 9 O -0.53 -10.10 15.93 5.56 0.09 -10.01 16 10 N -0.73 -9.37 5.40 -60.29 -0.33 -9.70 16 11 C 0.12 1.78 4.80 -4.04 -0.02 1.76 16 12 C -0.08 -1.14 5.37 -26.73 -0.14 -1.28 16 13 C -0.13 -1.90 1.83 -154.50 -0.28 -2.18 16 14 C 0.19 3.68 5.31 -4.04 -0.02 3.66 16 15 N -0.75 -17.80 5.28 -59.91 -0.32 -18.11 16 16 C -0.24 -6.92 10.47 -15.06 -0.16 -7.07 16 17 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 18 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 19 N -0.93 -29.89 13.97 55.49 0.78 -29.11 16 20 Si 0.89 22.42 27.90 -169.99 -4.74 17.67 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 23 H -0.28 -6.55 6.30 56.52 0.36 -6.19 16 24 C -0.17 -2.11 9.87 -26.72 -0.26 -2.37 16 25 C -0.17 -2.30 9.97 -26.73 -0.27 -2.56 16 26 H 0.10 0.90 7.99 -52.49 -0.42 0.48 16 27 H 0.10 0.71 8.04 -52.49 -0.42 0.28 16 28 H 0.07 0.41 6.39 -51.93 -0.33 0.07 16 29 H 0.06 0.38 8.06 -51.93 -0.42 -0.04 16 30 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.08 1.00 7.80 -51.93 -0.41 0.60 16 32 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.06 0.39 7.71 -51.93 -0.40 -0.01 16 34 H 0.07 0.47 5.08 -51.93 -0.26 0.20 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.40 3.85 8.10 -40.82 -0.33 3.52 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 1.74 6.84 -51.93 -0.36 1.39 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.67 7.95 -51.93 -0.41 0.26 16 41 H 0.02 0.49 8.09 -51.93 -0.42 0.07 16 42 H 0.04 0.77 6.69 -51.93 -0.35 0.43 16 43 H 0.36 8.41 5.46 -40.82 -0.22 8.18 16 44 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 45 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 46 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 384.51 15.07 5.79 5.79 Total: -1.00 -33.95 384.51 -8.45 -42.39 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -8.57 Total: 10.25 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -1.15 Total: -9.18 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.13 Total: -56.92 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.74 Total: 17.67 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.95 -8.45 -42.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166745749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.798 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds