Wall clock time and date at job start Fri Apr 10 2020 20:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99850 * 2 1 4 4 C 1.50696 * 119.99855 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47410 * 94.99752 * 4 2 1 6 6 H 1.08998 * 109.47249 * 55.00221 * 5 4 2 7 7 C 1.52997 * 109.46855 * 294.99625 * 5 4 2 8 8 C 1.50701 * 109.47171 * 174.99931 * 5 4 2 9 9 O 1.21282 * 120.00140 * 359.97438 * 8 5 4 10 10 N 1.34778 * 120.00121 * 180.02562 * 8 5 4 11 11 C 1.46499 * 119.99858 * 179.97438 * 10 8 5 12 12 C 1.52997 * 109.46908 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47237 * 175.02506 * 12 11 10 14 14 C 1.52994 * 115.54899 * 278.03065 * 13 12 11 15 15 N 1.46500 * 109.47411 * 303.90125 * 14 13 12 16 16 C 1.36939 * 120.00233 * 175.59324 * 15 14 13 17 17 H 1.07999 * 119.99634 * 359.97438 * 16 15 14 18 18 C 1.38803 * 120.00096 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00170 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00002 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46960 * 59.99945 * 20 18 16 22 22 H 1.48496 * 109.47277 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47045 * 299.99669 * 20 18 16 24 24 C 1.53000 * 117.49927 * 132.32604 * 13 12 11 25 25 C 1.53004 * 60.00078 * 252.51177 * 24 13 12 26 26 H 1.08000 * 120.00251 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00313 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47049 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47098 * 299.99981 * 3 2 1 30 30 H 1.08996 * 109.47315 * 60.00167 * 3 2 1 31 31 H 1.09007 * 109.47279 * 334.99023 * 4 2 1 32 32 H 1.09001 * 109.46697 * 215.00162 * 4 2 1 33 33 H 1.09002 * 109.47803 * 299.99839 * 7 5 4 34 34 H 1.09004 * 109.47064 * 179.97438 * 7 5 4 35 35 H 1.09004 * 109.47186 * 60.00218 * 7 5 4 36 36 H 0.96995 * 119.99722 * 359.97438 * 10 8 5 37 37 H 1.08994 * 109.47434 * 300.00011 * 11 10 8 38 38 H 1.09002 * 109.47127 * 60.00573 * 11 10 8 39 39 H 1.09001 * 109.47332 * 295.02284 * 12 11 10 40 40 H 1.09000 * 109.47502 * 55.02336 * 12 11 10 41 41 H 1.09005 * 109.46965 * 63.90175 * 14 13 12 42 42 H 1.08999 * 109.47343 * 183.89425 * 14 13 12 43 43 H 0.96996 * 119.99733 * 355.59001 * 15 14 13 44 44 H 0.97003 * 120.00002 * 180.02562 * 19 18 16 45 45 H 1.09003 * 117.49911 * 359.97438 * 24 13 12 46 46 H 1.08999 * 117.50141 * 145.02141 * 24 13 12 47 47 H 1.09000 * 117.49744 * 252.51366 * 25 24 13 48 48 H 1.08992 * 117.49961 * 107.48611 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6833 -1.4377 6 1 2.9770 -0.8640 -1.9010 7 6 1.1486 -1.9539 -2.2331 8 6 3.2852 -2.9223 -1.4292 9 8 3.5773 -3.4505 -0.3772 10 7 3.7288 -3.4429 -2.5906 11 6 4.5632 -4.6469 -2.5822 12 6 4.9280 -5.0245 -4.0193 13 6 5.8993 -6.2067 -4.0051 14 6 7.3680 -5.8510 -3.7663 15 7 7.8043 -4.8776 -4.7705 16 6 9.0623 -4.3408 -4.7025 17 1 9.7326 -4.6348 -3.9084 18 6 9.4759 -3.4189 -5.6542 19 7 8.6591 -3.0610 -6.6223 20 14 11.1916 -2.6862 -5.5611 21 1 12.1996 -3.7729 -5.6525 22 1 11.3857 -1.7358 -6.6855 23 1 11.3538 -1.9677 -4.2716 24 6 5.5990 -7.3790 -4.9413 25 6 5.3912 -7.5317 -3.4331 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 3.1351 1.1060 -0.0005 29 1 1.8002 1.8767 -0.8899 30 1 1.8002 1.8767 0.8900 31 1 1.4386 -2.0856 0.4336 32 1 2.9741 -1.1991 0.5890 33 1 0.5990 -2.7733 -1.7698 34 1 1.4078 -2.2230 -3.2571 35 1 0.5281 -1.0578 -2.2393 36 1 3.4955 -3.0202 -3.4319 37 1 5.4739 -4.4540 -2.0153 38 1 4.0137 -5.4666 -2.1192 39 1 4.0248 -5.3030 -4.5623 40 1 5.3991 -4.1731 -4.5103 41 1 7.4807 -5.4214 -2.7709 42 1 7.9773 -6.7515 -3.8444 43 1 7.2022 -4.6133 -5.4835 44 1 8.9482 -2.4170 -7.2876 45 1 4.7093 -7.3083 -5.5670 46 1 6.4479 -7.8971 -5.3874 47 1 6.1034 -8.1502 -2.8870 48 1 4.3650 -7.5612 -3.0670 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166745751.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:32 Heat of formation + Delta-G solvation = -9.377265 kcal Electronic energy + Delta-G solvation = -23602.158953 eV Core-core repulsion = 20271.692069 eV Total energy + Delta-G solvation = -3330.466884 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.98704 -38.32949 -36.93623 -34.75782 -33.93367 -33.00443 -30.79076 -29.75528 -27.51910 -27.20320 -25.98810 -24.28316 -22.78893 -22.53310 -21.67645 -20.12780 -18.59657 -18.44334 -17.10856 -16.88678 -15.99553 -15.74027 -15.19621 -14.85737 -14.78982 -14.43625 -14.17416 -13.95555 -13.60531 -13.40756 -13.18162 -13.07608 -12.73920 -12.53330 -12.31627 -12.22205 -11.92035 -11.85207 -11.46363 -11.40653 -11.18351 -11.09906 -11.07026 -10.92995 -10.81953 -10.57411 -10.17159 -9.92460 -9.72968 -9.59393 -9.31945 -9.20241 -8.92739 -8.82633 -6.89845 -5.75961 -3.03635 1.97274 2.71857 3.26902 3.44778 3.49003 3.49982 4.06781 4.50028 4.61594 4.63589 4.69809 4.85988 4.95718 5.03929 5.09868 5.16653 5.25817 5.28943 5.35137 5.40019 5.52667 5.56757 5.57185 5.62767 5.65205 5.71093 5.73316 5.76040 5.80315 5.91636 5.93983 6.01111 6.17344 6.20372 6.23912 6.41211 6.43821 6.46293 6.52543 6.63459 6.66105 6.77822 6.84744 7.58500 7.70769 8.30086 8.43417 9.54912 10.13042 10.48819 11.46914 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.012716 B = 0.003349 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.439235 B = 8358.450833 C = 9920.228169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.123 4.123 4 C -0.068 4.068 5 C -0.106 4.106 6 H 0.099 0.901 7 C -0.145 4.145 8 C 0.515 3.485 9 O -0.544 6.544 10 N -0.725 5.725 11 C 0.125 3.875 12 C -0.092 4.092 13 C -0.118 4.118 14 C 0.188 3.812 15 N -0.727 5.727 16 C -0.238 4.238 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.167 4.167 25 C -0.178 4.178 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.400 0.600 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.026 0.974 42 H 0.018 0.982 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.015 2.109 8.695 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.118 4.118 3 C -0.180 4.180 4 C -0.105 4.105 5 C -0.127 4.127 6 H 0.117 0.883 7 C -0.203 4.203 8 C 0.301 3.699 9 O -0.422 6.422 10 N -0.376 5.376 11 C 0.002 3.998 12 C -0.130 4.130 13 C -0.119 4.119 14 C 0.060 3.940 15 N -0.372 5.372 16 C -0.369 4.369 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.204 4.204 25 C -0.215 4.215 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.234 0.766 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.043 0.957 42 H 0.035 0.965 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.107 0.893 46 H 0.113 0.887 47 H 0.110 0.890 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.613 1.756 9.499 20.088 hybrid contribution 0.716 0.690 -0.743 1.242 sum -16.898 2.446 8.755 19.188 Atomic orbital electron populations 1.23661 0.95251 1.01721 1.03082 1.21776 0.95400 0.95677 0.98996 1.20889 1.00439 0.94669 1.01984 1.20522 1.00858 0.94237 0.94921 1.21230 0.96950 0.96266 0.98250 0.88315 1.21841 0.96236 1.02720 0.99481 1.20582 0.80084 0.85491 0.83709 1.90691 1.58261 1.62179 1.31041 1.46060 1.52867 1.29874 1.08847 1.21337 0.94596 0.85986 0.97845 1.21264 0.97767 0.98679 0.95260 1.21567 0.96922 0.88813 1.04582 1.20174 0.88029 0.92678 0.93108 1.42294 1.15002 1.49061 1.30797 1.19192 0.90745 1.18178 1.08773 0.91330 1.24703 0.98198 1.00229 0.97802 1.69645 1.35454 1.36800 1.16423 0.86281 0.84357 0.78754 0.76890 1.21325 1.21706 1.21295 1.22996 1.02840 1.02203 0.92320 1.22961 1.01631 1.00287 0.96656 0.88636 0.88475 0.91733 0.91518 0.91594 0.90716 0.90268 0.92226 0.92080 0.91049 0.76556 0.91025 0.91953 0.92068 0.89226 0.95664 0.96477 0.78152 0.93547 0.89339 0.88706 0.88957 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.56 12.54 29.01 0.36 -1.19 16 2 C -0.12 -1.03 4.79 -101.07 -0.48 -1.51 16 3 C -0.12 -0.95 10.05 36.01 0.36 -0.59 16 4 C -0.07 -0.70 4.13 -27.89 -0.12 -0.82 16 5 C -0.11 -1.08 2.71 -91.77 -0.25 -1.33 16 6 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 7 C -0.15 -1.19 8.72 37.16 0.32 -0.87 16 8 C 0.52 7.07 7.15 -10.98 -0.08 6.99 16 9 O -0.54 -9.54 15.92 5.56 0.09 -9.45 16 10 N -0.73 -9.34 5.45 -60.30 -0.33 -9.67 16 11 C 0.13 1.83 5.49 -4.04 -0.02 1.81 16 12 C -0.09 -1.36 5.20 -26.73 -0.14 -1.50 16 13 C -0.12 -1.89 1.65 -154.51 -0.25 -2.15 16 14 C 0.19 3.82 6.15 -4.04 -0.02 3.80 16 15 N -0.73 -18.19 5.23 -59.91 -0.31 -18.50 16 16 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 20 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C -0.17 -2.42 9.87 -26.73 -0.26 -2.68 16 25 C -0.18 -2.39 9.58 -26.73 -0.26 -2.64 16 26 H 0.10 0.65 8.05 -52.49 -0.42 0.22 16 27 H 0.10 0.72 7.99 -52.49 -0.42 0.30 16 28 H 0.06 0.52 8.00 -51.93 -0.42 0.11 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.81 7.99 -51.93 -0.41 0.40 16 32 H 0.08 0.92 7.95 -51.93 -0.41 0.51 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.45 7.57 -51.93 -0.39 0.06 16 35 H 0.07 0.53 6.52 -51.93 -0.34 0.19 16 36 H 0.40 4.27 7.89 -40.82 -0.32 3.94 16 37 H 0.07 1.23 7.96 -51.93 -0.41 0.82 16 38 H 0.06 0.89 7.72 -51.93 -0.40 0.49 16 39 H 0.06 0.78 7.93 -51.93 -0.41 0.37 16 40 H 0.09 1.56 6.94 -51.93 -0.36 1.20 16 41 H 0.03 0.53 7.96 -51.93 -0.41 0.12 16 42 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 43 H 0.38 10.00 6.80 -40.82 -0.28 9.72 16 44 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.09 1.16 8.07 -51.93 -0.42 0.74 16 46 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 47 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.09 1.07 7.90 -51.93 -0.41 0.66 16 LS Contribution 390.37 15.07 5.88 5.88 Total: -1.00 -31.90 390.37 -8.80 -40.70 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -8.75 Total: 10.74 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -1.08 Total: -9.98 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.08 Total: -55.34 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.90 -8.80 -40.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166745751.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.322 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds