Wall clock time and date at job start Fri Apr 10 2020 20:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 119.99836 * 2 1 4 4 N 1.34777 * 120.00132 * 180.02562 * 2 1 3 5 5 C 1.47081 * 120.87795 * 4.84986 * 4 2 1 6 6 C 1.53240 * 108.51870 * 128.79575 * 5 4 2 7 7 N 1.46896 * 109.34245 * 53.82715 * 6 5 4 8 8 C 1.46898 * 111.00005 * 172.74755 * 7 6 5 9 9 C 1.53007 * 109.47207 * 184.30360 * 8 7 6 10 10 C 1.52999 * 109.46997 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47013 * 299.99588 * 10 9 8 12 12 C 1.50698 * 109.47072 * 300.00304 * 11 10 9 13 13 H 1.07997 * 120.00387 * 0.02562 * 12 11 10 14 14 C 1.37886 * 119.99581 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00009 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99681 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47277 * 60.00173 * 16 14 12 18 18 H 1.48507 * 109.47065 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47456 * 299.99625 * 16 14 12 20 20 C 1.53003 * 109.46959 * 60.00726 * 11 10 9 21 21 C 1.52999 * 109.46665 * 299.99487 * 20 11 10 22 22 C 1.46903 * 111.26924 * 296.89536 * 7 6 5 23 23 C 1.47072 * 120.88173 * 184.82823 * 4 2 1 24 24 H 1.09001 * 109.63376 * 111.49399 * 23 4 2 25 25 C 1.53008 * 109.63109 * 350.91587 * 23 4 2 26 26 H 1.08994 * 109.47380 * 239.99376 * 1 2 3 27 27 H 1.09004 * 109.47198 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47104 * 119.98991 * 1 2 3 29 29 H 1.08996 * 109.62350 * 248.50190 * 5 4 2 30 30 H 1.08997 * 109.62878 * 8.89010 * 5 4 2 31 31 H 1.09005 * 109.49238 * 293.86369 * 6 5 4 32 32 H 1.09001 * 109.48984 * 173.79168 * 6 5 4 33 33 H 1.08994 * 109.47227 * 64.29880 * 8 7 6 34 34 H 1.09003 * 109.46872 * 59.99745 * 9 8 7 35 35 H 1.08996 * 109.46735 * 300.00204 * 9 8 7 36 36 H 1.09000 * 109.46805 * 179.97438 * 10 9 8 37 37 H 1.08997 * 109.46996 * 60.00112 * 10 9 8 38 38 H 1.09002 * 109.46748 * 180.02562 * 11 10 9 39 39 H 0.96999 * 119.99637 * 179.97438 * 15 14 12 40 40 H 1.08997 * 109.47432 * 59.99242 * 20 11 10 41 41 H 1.08996 * 109.46972 * 179.97438 * 20 11 10 42 42 H 1.09000 * 109.46805 * 180.02562 * 21 20 11 43 43 H 1.09003 * 109.47411 * 299.99929 * 21 20 11 44 44 H 1.08999 * 109.48944 * 183.06508 * 22 7 6 45 45 H 1.09003 * 109.48980 * 303.14331 * 22 7 6 46 46 H 1.09000 * 109.46956 * 306.70101 * 25 23 4 47 47 H 1.08990 * 109.47059 * 66.70276 * 25 23 4 48 48 H 1.09001 * 109.47239 * 186.70826 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4690 -2.4498 -0.1078 6 6 2.1103 -3.2697 -1.2324 7 7 3.5552 -3.3795 -0.9915 8 6 4.1804 -4.2997 -1.9508 9 6 5.6605 -4.4710 -1.6028 10 6 6.3115 -5.4299 -2.6016 11 6 5.6114 -6.7886 -2.5347 12 6 5.7383 -7.3511 -1.1424 13 1 6.2652 -6.7949 -0.3812 14 6 5.1816 -8.5759 -0.8403 15 7 4.5395 -9.2529 -1.7671 16 14 5.3395 -9.2734 0.8853 17 1 4.7075 -8.3431 1.8551 18 1 4.6598 -10.5922 0.9503 19 1 6.7761 -9.4393 1.2227 20 6 4.1313 -6.6174 -2.8827 21 6 3.4803 -5.6585 -1.8840 22 6 4.2030 -2.0615 -1.0274 23 6 3.6476 -1.1921 0.1057 24 1 3.9380 -1.6147 1.0676 25 6 4.1964 0.2305 -0.0218 26 1 -0.3634 -0.5139 0.8899 27 1 -0.3634 1.0277 0.0005 28 1 -0.3633 -0.5137 -0.8901 29 1 1.5500 -2.9932 0.8335 30 1 0.4190 -2.2677 -0.3364 31 1 1.9374 -2.7743 -2.1879 32 1 1.6683 -4.2659 -1.2537 33 1 4.0886 -3.8924 -2.9576 34 1 5.7522 -4.8783 -0.5959 35 1 6.1592 -3.5029 -1.6500 36 1 7.3660 -5.5515 -2.3539 37 1 6.2198 -5.0230 -3.6086 38 1 6.0755 -7.4719 -3.2459 39 1 4.1482 -10.1147 -1.5546 40 1 4.0396 -6.2105 -3.8897 41 1 3.6327 -7.5854 -2.8355 42 1 2.4258 -5.5368 -2.1316 43 1 3.5720 -6.0653 -0.8769 44 1 5.2789 -2.1815 -0.8999 45 1 4.0010 -1.5829 -1.9856 46 1 3.8125 0.6876 -0.9338 47 1 3.8825 0.8195 0.8398 48 1 5.2852 0.1976 -0.0624 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337101.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:40 Heat of formation + Delta-G solvation = -26.169137 kcal Electronic energy + Delta-G solvation = -25550.918061 eV Core-core repulsion = 22219.723026 eV Total energy + Delta-G solvation = -3331.195035 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.57069 -38.73887 -36.79639 -34.32267 -33.27904 -32.08621 -30.09454 -29.65667 -28.73361 -27.39199 -25.58086 -24.47117 -22.87151 -21.75535 -21.01897 -20.13254 -18.97251 -18.62314 -16.85856 -16.24111 -15.80019 -15.68964 -15.33157 -14.94929 -14.62699 -14.19110 -13.92857 -13.71826 -13.38663 -13.07416 -12.75464 -12.71346 -12.56825 -12.46907 -12.22643 -12.05769 -11.84541 -11.66218 -11.48994 -11.10192 -10.95552 -10.88151 -10.80803 -10.63833 -10.59591 -10.30579 -10.08629 -9.61349 -9.18830 -9.15795 -8.82178 -8.68976 -8.60270 -8.25653 -7.99358 -5.93886 -3.97657 2.53088 2.89206 3.34100 3.38711 3.42130 4.04208 4.45118 4.47642 4.82893 4.90876 5.00827 5.09927 5.15420 5.21449 5.28636 5.30472 5.36900 5.51495 5.55791 5.63401 5.72914 5.75280 5.79091 5.89823 5.96517 6.01978 6.18449 6.25135 6.31350 6.41935 6.49983 6.53743 6.59836 6.66347 6.74514 6.82794 7.08245 7.20667 7.30406 7.36427 7.41393 7.51851 7.64047 7.77206 7.95521 8.10743 8.17467 8.51668 9.04287 9.65421 11.12096 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.022527 B = 0.004032 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.658887 B = 6942.274347 C = 7190.756609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.510 3.490 3 O -0.546 6.546 4 N -0.610 5.610 5 C 0.111 3.889 6 C 0.036 3.964 7 N -0.532 5.532 8 C 0.096 3.904 9 C -0.098 4.098 10 C -0.106 4.106 11 C 0.044 3.956 12 C -0.498 4.498 13 H 0.055 0.945 14 C 0.062 3.938 15 N -0.893 5.893 16 Si 0.884 3.116 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.279 1.279 20 C -0.107 4.107 21 C -0.093 4.093 22 C 0.042 3.958 23 C 0.147 3.853 24 H 0.079 0.921 25 C -0.134 4.134 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.031 0.969 32 H 0.098 0.902 33 H 0.024 0.976 34 H 0.079 0.921 35 H 0.035 0.965 36 H 0.048 0.952 37 H 0.030 0.970 38 H 0.023 0.977 39 H 0.258 0.742 40 H 0.011 0.989 41 H 0.093 0.907 42 H 0.032 0.968 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.031 0.969 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.559 14.168 1.880 16.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.299 3.701 3 O -0.425 6.425 4 N -0.344 5.344 5 C -0.012 4.012 6 C -0.093 4.093 7 N -0.256 5.256 8 C -0.011 4.011 9 C -0.136 4.136 10 C -0.144 4.144 11 C 0.026 3.974 12 C -0.536 4.536 13 H 0.073 0.927 14 C -0.139 4.139 15 N -0.533 5.533 16 Si 0.712 3.288 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.205 1.205 20 C -0.145 4.145 21 C -0.130 4.130 22 C -0.087 4.087 23 C 0.044 3.956 24 H 0.097 0.903 25 C -0.191 4.191 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.116 0.884 33 H 0.042 0.958 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.029 0.971 41 H 0.111 0.889 42 H 0.050 0.950 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.049 0.951 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.278 14.355 2.324 16.262 hybrid contribution -0.160 -0.307 0.086 0.357 sum -7.438 14.048 2.410 16.077 Atomic orbital electron populations 1.21990 0.92435 1.05091 1.04018 1.20753 0.90380 0.83190 0.75758 1.90755 1.69622 1.31815 1.50258 1.48324 1.07423 1.06170 1.72487 1.21931 0.95649 0.83461 1.00152 1.22534 0.89957 1.00824 0.95953 1.61985 1.01908 1.09148 1.52571 1.21685 0.95525 0.92847 0.91077 1.21503 0.92815 0.97325 1.01928 1.21556 0.99002 0.97897 0.95991 1.18681 0.91419 0.90399 0.96915 1.21105 1.33910 1.02770 0.95836 0.92700 1.24918 0.95500 0.96942 0.96520 1.69859 1.36839 1.13898 1.32664 0.86786 0.78179 0.78222 0.85574 1.20291 1.21526 1.20487 1.21517 0.99969 0.99663 0.93381 1.21495 0.95682 0.92922 1.02930 1.22609 1.00136 0.89177 0.96728 1.21424 0.78395 0.96748 0.99059 0.90310 1.22146 0.98592 0.94046 1.04361 0.89494 0.89258 0.89599 0.90305 0.89574 0.95037 0.88429 0.95774 0.90216 0.94595 0.93366 0.95096 0.95874 0.93175 0.97062 0.88919 0.94983 0.90097 0.89059 0.95052 0.91419 0.91039 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 8.75 36.01 0.32 -1.05 16 2 C 0.51 6.15 7.71 -10.99 -0.08 6.07 16 3 O -0.55 -8.29 12.60 5.55 0.07 -8.22 16 4 N -0.61 -7.31 3.01 -164.92 -0.50 -7.81 16 5 C 0.11 1.16 6.49 -3.60 -0.02 1.13 16 6 C 0.04 0.46 5.31 -3.70 -0.02 0.44 16 7 N -0.53 -8.07 4.50 -226.34 -1.02 -9.09 16 8 C 0.10 1.67 1.95 -67.71 -0.13 1.54 16 9 C -0.10 -1.80 4.76 -26.73 -0.13 -1.93 16 10 C -0.11 -2.15 5.41 -26.73 -0.14 -2.29 16 11 C 0.04 1.05 2.59 -91.77 -0.24 0.82 16 12 C -0.50 -12.89 6.61 -34.44 -0.23 -13.12 16 13 H 0.05 1.42 6.71 -52.49 -0.35 1.07 16 14 C 0.06 1.64 5.30 -17.81 -0.09 1.54 16 15 N -0.89 -24.68 11.32 55.43 0.63 -24.05 16 16 Si 0.88 20.83 29.54 -169.99 -5.02 15.81 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.11 -2.40 5.24 -26.73 -0.14 -2.54 16 21 C -0.09 -1.83 4.63 -26.73 -0.12 -1.95 16 22 C 0.04 0.59 4.69 -3.70 -0.02 0.57 16 23 C 0.15 1.90 3.65 -67.49 -0.25 1.65 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 25 C -0.13 -1.72 7.62 37.16 0.28 -1.44 16 26 H 0.09 0.54 8.13 -51.93 -0.42 0.11 16 27 H 0.09 0.68 8.12 -51.93 -0.42 0.25 16 28 H 0.09 0.55 7.46 -51.93 -0.39 0.16 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 0.65 6.04 -51.93 -0.31 0.33 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 1.27 5.83 -51.93 -0.30 0.97 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 1.63 6.62 -51.93 -0.34 1.29 16 35 H 0.04 0.59 6.25 -51.93 -0.32 0.26 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 42 H 0.03 0.57 6.19 -51.93 -0.32 0.25 16 43 H 0.08 1.82 7.22 -51.93 -0.37 1.44 16 44 H 0.09 1.27 5.95 -51.93 -0.31 0.96 16 45 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.97 6.76 -51.93 -0.35 0.62 16 47 H 0.07 0.99 6.79 -51.93 -0.35 0.64 16 48 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -28.68 346.86 -9.89 -38.57 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -8.25 Total: 0.12 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -1.02 Total: -10.56 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: -0.89 Total: -40.94 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.07 Total: -8.22 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.68 -9.89 -38.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337101.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.399 kcal (2) G-P(sol) polarization free energy of solvation -28.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds