Wall clock time and date at job start Fri Apr 10 2020 20:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46824 * 2 1 4 4 C 1.53000 * 109.46846 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.47060 * 185.00166 * 4 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47482 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.47212 * 180.02562 * 7 6 5 9 9 C 1.36936 * 119.99992 * 180.02562 * 8 7 6 10 10 H 1.08006 * 119.99834 * 359.97438 * 9 8 7 11 11 C 1.38809 * 120.00335 * 179.97438 * 9 8 7 12 12 N 1.31620 * 119.99501 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00382 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47341 * 59.99994 * 13 11 9 15 15 H 1.48505 * 109.47326 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.47105 * 299.99856 * 13 11 9 17 17 N 1.46498 * 109.47107 * 239.99825 * 2 1 3 18 18 C 1.34775 * 119.99962 * 85.00055 * 17 2 1 19 19 O 1.21279 * 120.00095 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00075 * 179.97438 * 18 17 2 21 21 H 1.09007 * 115.55726 * 34.26382 * 20 18 17 22 22 C 1.53126 * 117.51648 * 248.46471 * 20 18 17 23 23 C 1.52460 * 117.51752 * 180.02562 * 20 18 17 24 24 C 1.53258 * 128.58056 * 349.85056 * 23 20 18 25 25 C 1.53885 * 86.88423 * 194.88577 * 24 23 20 26 26 C 1.53250 * 128.58824 * 225.05462 * 23 20 18 27 27 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47241 * 299.99897 * 1 2 3 29 29 H 1.08996 * 109.46751 * 60.00260 * 1 2 3 30 30 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 31 31 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 32 32 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 33 33 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 34 34 H 1.09002 * 109.47103 * 300.00247 * 6 5 4 35 35 H 1.09001 * 109.47066 * 60.00169 * 6 5 4 36 36 H 1.09002 * 109.47153 * 300.00216 * 7 6 5 37 37 H 1.09001 * 109.47289 * 60.00300 * 7 6 5 38 38 H 0.96995 * 120.00194 * 359.97438 * 8 7 6 39 39 H 0.97006 * 119.99753 * 179.97438 * 12 11 9 40 40 H 0.96998 * 119.99659 * 264.99982 * 17 2 1 41 41 H 1.09001 * 117.51373 * 359.97438 * 22 20 18 42 42 H 1.08998 * 117.51235 * 145.10376 * 22 20 18 43 43 H 1.08995 * 113.64814 * 309.38677 * 24 23 20 44 44 H 1.09006 * 113.64691 * 80.39027 * 24 23 20 45 45 H 1.08999 * 113.58945 * 270.39719 * 25 24 23 46 46 H 1.08998 * 113.59201 * 139.57227 * 25 24 23 47 47 H 1.09000 * 113.64747 * 279.60771 * 26 23 20 48 48 H 1.09001 * 113.64798 * 50.51881 * 26 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0749 -1.3349 2.5627 7 6 5.5997 -1.2274 2.6269 8 7 6.0881 -1.9190 3.8225 9 6 7.4302 -1.9555 4.0921 10 1 8.1287 -1.4748 3.4231 11 6 7.8930 -2.6103 5.2252 12 7 7.0417 -3.1957 6.0407 13 14 9.7237 -2.6607 5.5926 14 1 10.2366 -1.2753 5.7443 15 1 9.9557 -3.4155 6.8504 16 1 10.4347 -3.3321 4.4748 17 7 2.0184 -0.6906 -1.1961 18 6 2.1471 -0.0183 -2.3571 19 8 1.8591 1.1585 -2.4115 20 6 2.6500 -0.7286 -3.5874 21 1 2.3539 -1.7735 -3.6812 22 6 4.0312 -0.3337 -4.1173 23 6 2.7742 0.0864 -4.8699 24 6 2.2602 1.5014 -5.1567 25 6 2.4987 1.1956 -6.6459 26 6 2.3384 -0.2928 -6.2893 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6053 -0.2616 2.1370 31 1 1.7517 -1.7715 1.2057 32 1 3.9995 -1.0727 0.4261 33 1 3.8532 0.4370 1.3574 34 1 3.6402 -0.8757 3.4506 35 1 3.7866 -2.3851 2.5186 36 1 6.0340 -1.6869 1.7389 37 1 5.8885 -0.1773 2.6708 38 1 5.4608 -2.3504 4.4235 39 1 7.3651 -3.6536 6.8324 40 1 2.2491 -1.6318 -1.1525 41 1 4.5758 0.4402 -3.5762 42 1 4.6442 -1.1189 -4.5597 43 1 1.2100 1.6449 -4.9026 44 1 2.9037 2.2884 -4.7634 45 1 3.4996 1.4564 -6.9898 46 1 1.7135 1.5744 -7.3002 47 1 3.0445 -0.9442 -6.8042 48 1 1.3104 -0.6502 -6.3503 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175477828.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:26 Heat of formation + Delta-G solvation = -4.532789 kcal Electronic energy + Delta-G solvation = -23136.628676 eV Core-core repulsion = 19806.371864 eV Total energy + Delta-G solvation = -3330.256812 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.61836 -38.92584 -36.84243 -35.22184 -33.95749 -33.18761 -31.43562 -30.23088 -27.43445 -25.95426 -24.92193 -23.99179 -23.34251 -22.07257 -20.84539 -20.65353 -20.44175 -18.62070 -17.38594 -16.99370 -16.44084 -15.62283 -15.49235 -15.11131 -14.75678 -14.63022 -14.53584 -13.91915 -13.49514 -13.15952 -12.98704 -12.95095 -12.90790 -12.60889 -12.42453 -12.23229 -11.82368 -11.76489 -11.72266 -11.44366 -11.24537 -10.98458 -10.78479 -10.69392 -10.62699 -10.42351 -10.37172 -10.28723 -10.07800 -9.99722 -9.76195 -9.64593 -9.16931 -8.84042 -6.88978 -5.74005 -3.02390 2.36923 2.95600 3.45595 3.49041 3.49410 3.50894 4.09151 4.31861 4.45491 4.49926 4.53745 4.60255 4.65718 4.82462 4.96019 5.00673 5.08154 5.26293 5.28056 5.39600 5.41842 5.43852 5.47067 5.51924 5.56414 5.59737 5.63422 5.67002 5.72344 5.80457 5.88074 5.92353 5.97225 6.02360 6.12184 6.12894 6.25911 6.32342 6.40093 6.43974 6.48417 6.91309 6.95277 7.39374 7.71616 8.13202 8.45483 9.55985 10.15413 10.50060 11.49055 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.019149 B = 0.002393 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.860920 B =11698.766763 C =12825.043978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.720 5.720 18 C 0.544 3.456 19 O -0.538 6.538 20 C -0.182 4.182 21 H 0.121 0.879 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.082 4.082 25 C -0.143 4.143 26 C -0.099 4.099 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.401 0.599 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.691 5.275 -23.558 28.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.105 0.895 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.371 5.371 18 C 0.331 3.669 19 O -0.415 6.415 20 C -0.203 4.203 21 H 0.139 0.861 22 C -0.157 4.157 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.180 4.180 26 C -0.137 4.137 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.216 0.784 39 H 0.065 0.935 40 H 0.235 0.765 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.727 6.159 -23.580 28.475 hybrid contribution 0.926 -0.887 0.674 1.449 sum -13.801 5.272 -22.907 27.257 Atomic orbital electron populations 1.22173 0.95492 1.02008 1.02400 1.21031 0.93651 0.97694 0.83938 0.89453 1.21936 0.96885 1.00915 0.96728 1.21511 0.93962 1.01044 0.98644 1.21725 0.97241 1.00257 0.97116 1.20647 0.91019 0.95294 0.90548 1.42386 1.05320 1.64936 1.25259 1.19210 0.83930 1.28401 1.05463 0.91296 1.24755 0.97753 1.00999 0.97715 1.69657 1.32847 1.40747 1.15158 0.86247 0.85093 0.77477 0.77258 1.21267 1.21670 1.21284 1.46069 1.67328 1.14189 1.09523 1.19616 0.77053 0.86701 0.83541 1.90680 1.49991 1.15864 1.84931 1.22173 1.03475 1.00600 0.94029 0.86067 1.22802 0.88937 1.02990 1.01014 1.22282 1.01424 0.97876 0.91183 1.22315 1.01661 0.93837 0.94102 1.22817 1.01979 0.96101 0.97108 1.22507 1.01419 0.97106 0.92632 0.92546 0.91575 0.92347 0.90264 0.91374 0.92102 0.92055 0.92075 0.92145 0.96636 0.96599 0.78350 0.93502 0.76510 0.87906 0.87528 0.89534 0.91249 0.90113 0.91298 0.91237 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.48 37.16 0.35 -1.13 16 2 C 0.14 1.42 2.57 -67.93 -0.17 1.24 16 3 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 4 C -0.13 -1.27 4.75 -26.73 -0.13 -1.40 16 5 C -0.11 -1.42 5.10 -26.74 -0.14 -1.56 16 6 C -0.13 -2.02 5.33 -26.74 -0.14 -2.16 16 7 C 0.15 3.17 6.26 -4.04 -0.03 3.15 16 8 N -0.74 -19.36 5.60 -59.90 -0.34 -19.69 16 9 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 10 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 11 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 12 N -0.94 -28.83 13.06 55.49 0.72 -28.10 16 13 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 17 N -0.72 -6.83 4.53 -53.81 -0.24 -7.07 16 18 C 0.54 6.06 7.58 -10.99 -0.08 5.97 16 19 O -0.54 -7.72 14.80 5.56 0.08 -7.64 16 20 C -0.18 -1.59 6.19 -91.98 -0.57 -2.16 16 21 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 22 C -0.12 -1.00 10.23 -26.97 -0.28 -1.27 16 23 C -0.13 -1.10 2.87 -154.83 -0.44 -1.55 16 24 C -0.08 -0.76 6.47 -26.14 -0.17 -0.93 16 25 C -0.14 -1.00 8.08 -25.81 -0.21 -1.21 16 26 C -0.10 -0.68 8.10 -26.14 -0.21 -0.90 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.74 7.75 -51.93 -0.40 0.34 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.38 10.50 7.67 -40.82 -0.31 10.19 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.40 3.04 8.60 -40.82 -0.35 2.69 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 389.73 15.07 5.87 5.87 Total: -1.00 -33.08 389.73 -10.42 -43.50 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -9.03 Total: 6.90 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -2.46 Total: -11.54 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.15 Total: -54.86 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.08 Total: -7.64 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.08 -10.42 -43.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175477828.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.970 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds