Wall clock time and date at job start Fri Apr 10 2020 20:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00304 * 2 1 4 4 C 1.52999 * 109.47163 * 124.72374 * 3 2 1 5 5 C 1.52996 * 109.46846 * 180.02562 * 4 3 2 6 6 C 1.50708 * 109.47139 * 180.02562 * 5 4 3 7 7 O 1.21276 * 119.99543 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99813 * 180.02562 * 6 5 4 9 9 C 1.48144 * 127.84457 * 0.02562 * 8 6 5 10 10 C 1.54387 * 104.62056 * 219.59124 * 9 8 6 11 11 H 1.08995 * 110.34433 * 95.10730 * 10 9 8 12 12 C 1.53001 * 110.34010 * 217.26090 * 10 9 8 13 13 C 1.54286 * 104.95947 * 336.13005 * 10 9 8 14 14 C 1.53001 * 110.34249 * 241.13094 * 13 10 9 15 15 C 1.53000 * 110.34318 * 118.87011 * 13 10 9 16 16 N 1.46500 * 109.47063 * 179.97438 * 15 13 10 17 17 C 1.36939 * 119.99757 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00062 * 0.02562 * 17 16 15 19 19 C 1.38811 * 119.99670 * 180.02562 * 17 16 15 20 20 N 1.31620 * 120.00495 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99791 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47102 * 90.00144 * 21 19 17 23 23 H 1.48504 * 109.47028 * 210.00105 * 21 19 17 24 24 H 1.48501 * 109.46838 * 329.99969 * 21 19 17 25 25 C 1.48148 * 127.83452 * 179.70510 * 8 6 5 26 26 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.99740 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00336 * 179.72373 * 2 1 3 29 29 H 1.08997 * 109.47325 * 244.72857 * 3 2 1 30 30 H 1.09004 * 109.46539 * 4.72066 * 3 2 1 31 31 H 1.09001 * 109.47018 * 300.00126 * 4 3 2 32 32 H 1.08995 * 109.47070 * 60.00512 * 4 3 2 33 33 H 1.09001 * 109.47165 * 299.99729 * 5 4 3 34 34 H 1.08998 * 109.47611 * 60.00231 * 5 4 3 35 35 H 1.09009 * 110.40421 * 338.37414 * 9 8 6 36 36 H 1.09002 * 110.40843 * 100.68123 * 9 8 6 37 37 H 1.08995 * 109.47125 * 58.54750 * 12 10 9 38 38 H 1.09003 * 109.46984 * 178.54371 * 12 10 9 39 39 H 1.08996 * 109.47325 * 298.53983 * 12 10 9 40 40 H 1.08999 * 109.46977 * 60.00480 * 14 13 10 41 41 H 1.08998 * 109.47035 * 179.97438 * 14 13 10 42 42 H 1.08997 * 109.47437 * 299.99852 * 14 13 10 43 43 H 1.08994 * 109.47165 * 300.00390 * 15 13 10 44 44 H 1.09004 * 109.46549 * 60.00076 * 15 13 10 45 45 H 0.96997 * 119.99842 * 0.02562 * 16 15 13 46 46 H 0.96993 * 120.00225 * 180.02562 * 20 19 17 47 47 H 1.08998 * 110.40521 * 259.19571 * 25 8 6 48 48 H 1.09000 * 110.40671 * 21.62525 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0301 1.3359 1.1856 5 6 3.7947 2.6611 1.1859 6 6 4.7473 2.6913 2.3533 7 8 4.8082 1.7461 3.1107 8 7 5.5306 3.7691 2.5562 9 6 5.5973 5.0092 1.7485 10 6 7.0994 5.3623 1.6998 11 1 7.5527 4.9657 0.7914 12 6 7.2919 6.8785 1.7710 13 6 7.7082 4.6853 2.9454 14 6 8.3205 5.7346 3.8753 15 6 8.7648 3.6595 2.5302 16 7 9.3301 3.0294 3.7259 17 6 10.3008 2.0716 3.6012 18 1 10.6498 1.7810 2.6214 19 6 10.8360 1.4743 4.7341 20 7 10.4103 1.8281 5.9282 21 14 12.1607 0.1681 4.5640 22 1 13.4976 0.8144 4.5764 23 1 12.0622 -0.7872 5.6966 24 1 11.9751 -0.5611 3.2837 25 6 6.5158 3.9851 3.6413 26 1 -0.5401 -0.9353 0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 1.8500 -0.9353 0.0045 29 1 2.6251 1.4004 -0.9293 30 1 1.3582 2.1319 0.0846 31 1 2.4684 1.2407 2.1149 32 1 3.7354 0.5092 1.1009 33 1 4.3563 2.7568 0.2566 34 1 3.0892 3.4877 1.2708 35 1 5.2164 4.8289 0.7432 36 1 5.0327 5.8074 2.2304 37 1 6.8454 7.2587 2.6898 38 1 8.3569 7.1103 1.7617 39 1 6.8107 7.3466 0.9123 40 1 7.5472 6.4339 4.1932 41 1 8.7456 5.2416 4.7496 42 1 9.1047 6.2760 3.3460 43 1 8.3043 2.8979 1.9010 44 1 9.5578 4.1595 1.9740 45 1 9.0163 3.2903 4.6059 46 1 10.7846 1.4110 6.7199 47 1 6.0943 4.6264 4.4152 48 1 6.8290 3.0312 4.0658 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182437721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:03 Heat of formation + Delta-G solvation = -18.296091 kcal Electronic energy + Delta-G solvation = -24326.466720 eV Core-core repulsion = 20995.613086 eV Total energy + Delta-G solvation = -3330.853634 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.21938 -38.35915 -36.07705 -34.70629 -33.21997 -32.44246 -31.48415 -29.60018 -28.00625 -26.62439 -25.56556 -25.31138 -23.30541 -21.99615 -21.05135 -20.07596 -18.99636 -18.27271 -17.34134 -16.56648 -16.14339 -15.73911 -15.16773 -14.92298 -14.67209 -14.34909 -13.92580 -13.80028 -13.45180 -13.42228 -13.02678 -12.90110 -12.66963 -12.39128 -12.06511 -11.88692 -11.81109 -11.59766 -11.49670 -11.38835 -11.17171 -11.09141 -10.93898 -10.82977 -10.77947 -10.43008 -10.27617 -10.15244 -9.86019 -9.63182 -9.54796 -9.48701 -8.81770 -8.48172 -6.85213 -5.70471 -2.98387 2.07058 2.85689 3.13688 3.47936 3.53026 3.55069 4.46714 4.57555 4.62209 4.67538 4.78894 4.87248 4.93324 5.05285 5.11241 5.30236 5.33116 5.37076 5.42085 5.44517 5.52071 5.54106 5.59316 5.60972 5.68404 5.73081 5.77106 5.89013 6.00387 6.02177 6.05433 6.15348 6.22672 6.23381 6.26661 6.39424 6.43478 6.46695 6.56133 6.59704 6.73448 6.83987 6.92822 7.75555 7.79449 8.40114 8.48572 9.59759 10.17207 10.51862 11.52575 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.003888 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.450989 B = 7199.410307 C = 8918.168596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.095 4.095 4 C -0.101 4.101 5 C -0.134 4.134 6 C 0.528 3.472 7 O -0.534 6.534 8 N -0.622 5.622 9 C 0.106 3.894 10 C -0.099 4.099 11 H 0.081 0.919 12 C -0.141 4.141 13 C -0.075 4.075 14 C -0.134 4.134 15 C 0.170 3.830 16 N -0.729 5.729 17 C -0.237 4.237 18 H 0.068 0.932 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.283 1.283 25 C 0.112 3.888 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.016 0.984 44 H 0.019 0.981 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.064 0.936 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.660 8.961 -12.736 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.166 4.166 3 C -0.132 4.132 4 C -0.139 4.139 5 C -0.174 4.174 6 C 0.317 3.683 7 O -0.410 6.410 8 N -0.356 5.356 9 C -0.017 4.017 10 C -0.118 4.118 11 H 0.099 0.901 12 C -0.199 4.199 13 C -0.076 4.076 14 C -0.192 4.192 15 C 0.042 3.958 16 N -0.374 5.374 17 C -0.368 4.368 18 H 0.086 0.914 19 C -0.209 4.209 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.010 4.010 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.034 0.966 44 H 0.037 0.963 45 H 0.219 0.781 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.595 8.214 -12.406 22.288 hybrid contribution 0.708 -0.631 0.189 0.967 sum -15.887 7.583 -12.217 21.428 Atomic orbital electron populations 1.23825 0.95964 1.01695 1.02270 1.22997 0.96033 0.98738 0.98867 1.20802 0.98174 0.95363 0.98863 1.21299 0.97757 0.96475 0.98386 1.21650 0.97986 1.00292 0.97452 1.20287 0.80560 0.80875 0.86568 1.90753 1.67924 1.34567 1.47771 1.48983 1.40325 1.16494 1.29841 1.22473 0.96986 0.86593 0.95693 1.22142 0.94391 0.96157 0.99152 0.90051 1.21889 1.02348 0.94218 1.01422 1.21772 0.95245 0.95999 0.94625 1.21870 0.99941 0.97456 0.99886 1.20631 0.92231 0.92149 0.90790 1.42389 1.45797 1.46101 1.03085 1.19194 1.12193 1.12812 0.92620 0.91385 1.24714 1.00486 1.00461 0.95270 1.69647 1.45832 1.45953 0.96754 0.86201 0.81723 0.81461 0.76880 1.21815 1.21786 1.20836 1.22605 0.87061 1.02253 0.89059 0.88651 0.88721 0.87285 0.90902 0.91569 0.91065 0.90821 0.89092 0.89300 0.90745 0.91201 0.92085 0.91801 0.93105 0.93142 0.91303 0.92223 0.96573 0.96275 0.78103 0.93559 0.91770 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.62 14.32 29.02 0.42 -1.20 16 2 C -0.15 -1.32 9.52 -36.02 -0.34 -1.66 16 3 C -0.09 -0.80 5.66 -27.88 -0.16 -0.96 16 4 C -0.10 -1.12 4.49 -26.73 -0.12 -1.24 16 5 C -0.13 -1.43 4.68 -27.88 -0.13 -1.56 16 6 C 0.53 8.41 7.91 -10.98 -0.09 8.32 16 7 O -0.53 -11.15 16.25 5.56 0.09 -11.06 16 8 N -0.62 -9.24 3.31 -169.05 -0.56 -9.80 16 9 C 0.11 1.13 6.45 -2.41 -0.02 1.11 16 10 C -0.10 -1.16 3.30 -89.22 -0.29 -1.46 16 11 H 0.08 0.98 7.72 -51.93 -0.40 0.58 16 12 C -0.14 -1.33 7.93 37.16 0.29 -1.04 16 13 C -0.08 -1.18 0.74 -152.89 -0.11 -1.30 16 14 C -0.13 -2.00 7.11 37.16 0.26 -1.74 16 15 C 0.17 3.48 4.96 -4.04 -0.02 3.46 16 16 N -0.73 -18.72 4.80 -59.91 -0.29 -19.01 16 17 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 21 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 25 C 0.11 1.92 5.93 -2.19 -0.01 1.91 16 26 H 0.10 0.68 8.06 -52.49 -0.42 0.26 16 27 H 0.09 0.68 7.84 -52.48 -0.41 0.27 16 28 H 0.11 0.96 8.06 -52.49 -0.42 0.53 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 31 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 33 H 0.09 0.83 7.95 -51.93 -0.41 0.41 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.62 7.31 -51.92 -0.38 0.24 16 36 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 37 H 0.06 0.56 6.61 -51.93 -0.34 0.21 16 38 H 0.06 0.64 6.98 -51.93 -0.36 0.27 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.05 0.62 6.67 -51.93 -0.35 0.28 16 41 H 0.07 1.24 6.74 -51.93 -0.35 0.89 16 42 H 0.06 0.85 6.88 -51.93 -0.36 0.49 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.38 10.28 5.99 -40.82 -0.24 10.04 16 46 H 0.25 7.62 8.31 -40.82 -0.34 7.29 16 47 H 0.06 1.00 7.84 -51.93 -0.41 0.60 16 48 H 0.10 2.15 6.96 -51.93 -0.36 1.78 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -33.94 377.11 -8.48 -42.42 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -8.54 Total: 6.61 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.57 Total: -4.82 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.12 Total: -56.93 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.94 -8.48 -42.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182437721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.123 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds