Wall clock time and date at job start Fri Apr 10 2020 20:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 120.00190 * 2 1 4 4 C 1.50701 * 120.00041 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.46884 * 95.00155 * 4 2 1 6 6 C 1.50696 * 109.47135 * 180.02562 * 5 4 2 7 7 O 1.21288 * 120.00046 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00259 * 180.02562 * 6 5 4 9 9 C 1.46925 * 120.62931 * 359.97438 * 8 6 5 10 10 C 1.53195 * 108.77572 * 126.37393 * 9 8 6 11 11 C 1.53037 * 109.31347 * 54.63700 * 10 9 8 12 12 H 1.09001 * 109.46101 * 58.64065 * 11 10 9 13 13 C 1.52994 * 109.46344 * 178.61826 * 11 10 9 14 14 N 1.46510 * 109.46884 * 295.00061 * 13 11 10 15 15 C 1.36935 * 119.99776 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00259 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99472 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00240 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99684 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46845 * 90.00337 * 19 17 15 21 21 H 1.48503 * 109.47399 * 209.99827 * 19 17 15 22 22 H 1.48498 * 109.47295 * 330.00433 * 19 17 15 23 23 C 1.53042 * 109.53583 * 298.63580 * 11 10 9 24 24 H 1.08996 * 109.49872 * 301.41342 * 23 11 10 25 25 C 1.52997 * 109.49817 * 181.31442 * 23 11 10 26 26 C 1.46927 * 120.63546 * 179.97438 * 8 6 5 27 27 H 1.08000 * 119.99818 * 180.02562 * 1 2 3 28 28 H 1.07996 * 119.99652 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46947 * 269.99946 * 3 2 1 30 30 H 1.09001 * 109.46962 * 29.99685 * 3 2 1 31 31 H 1.08997 * 109.47477 * 149.99603 * 3 2 1 32 32 H 1.08993 * 109.46957 * 335.00593 * 4 2 1 33 33 H 1.09001 * 109.47398 * 214.99784 * 4 2 1 34 34 H 1.09002 * 109.47474 * 60.00125 * 5 4 2 35 35 H 1.08998 * 109.47273 * 300.00182 * 5 4 2 36 36 H 1.09007 * 109.59004 * 6.58779 * 9 8 6 37 37 H 1.08999 * 109.59131 * 246.16189 * 9 8 6 38 38 H 1.08999 * 109.49759 * 294.68361 * 10 9 8 39 39 H 1.09002 * 109.49678 * 174.58733 * 10 9 8 40 40 H 1.08995 * 109.47727 * 175.00074 * 13 11 10 41 41 H 1.09001 * 109.47087 * 54.99551 * 13 11 10 42 42 H 0.96998 * 119.99423 * 359.97438 * 14 13 11 43 43 H 0.97000 * 119.99789 * 359.97438 * 18 17 15 44 44 H 1.09001 * 109.47261 * 60.00210 * 25 23 11 45 45 H 1.09003 * 109.47512 * 179.97438 * 25 23 11 46 46 H 1.09004 * 109.47527 * 300.00099 * 25 23 11 47 47 H 1.09000 * 109.58078 * 353.41086 * 26 8 6 48 48 H 1.08998 * 109.59173 * 113.83390 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 6 3.1804 -2.9899 -1.4358 7 8 3.4044 -3.5604 -0.3892 8 7 3.6058 -3.5229 -2.5983 9 6 3.3426 -2.8433 -3.8741 10 6 4.6686 -2.6645 -4.6202 11 6 5.3566 -4.0240 -4.7626 12 1 4.7012 -4.7081 -5.3016 13 6 6.6648 -3.8547 -5.5375 14 7 6.3693 -3.4245 -6.9065 15 6 7.3913 -3.2078 -7.7918 16 1 8.4152 -3.3536 -7.4807 17 6 7.1111 -2.8007 -9.0890 18 7 5.8633 -2.6235 -9.4681 19 14 8.5053 -2.5045 -10.2964 20 1 8.8078 -3.7644 -11.0220 21 1 8.1032 -1.4572 -11.2696 22 1 9.7131 -2.0564 -9.5578 23 6 5.6566 -4.5936 -3.3741 24 1 6.2918 -3.8985 -2.8252 25 6 6.3738 -5.9375 -3.5175 26 6 4.3416 -4.7945 -2.6140 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5399 0.9353 -0.0004 29 1 2.2452 1.6197 -1.0276 30 1 1.4745 2.0648 0.5138 31 1 3.0159 1.1748 0.5139 32 1 1.4386 -2.0852 0.4351 33 1 2.9743 -1.1986 0.5899 34 1 3.0524 -0.9043 -1.8710 35 1 1.5168 -1.7910 -2.0257 36 1 2.8963 -1.8673 -3.6830 37 1 2.6631 -3.4466 -4.4761 38 1 5.3131 -1.9875 -4.0596 39 1 4.4762 -2.2488 -5.6093 40 1 7.1981 -4.8049 -5.5625 41 1 7.2835 -3.1036 -5.0463 42 1 5.4496 -3.2939 -7.1859 43 1 5.1393 -2.7778 -8.8412 44 1 7.3078 -5.7947 -4.0610 45 1 6.5877 -6.3426 -2.5284 46 1 5.7373 -6.6325 -4.0653 47 1 4.5545 -5.1060 -1.5913 48 1 3.7434 -5.5568 -3.1132 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184498021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:41 Heat of formation + Delta-G solvation = -31.749316 kcal Electronic energy + Delta-G solvation = -24137.813592 eV Core-core repulsion = 20806.376583 eV Total energy + Delta-G solvation = -3331.437009 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.41794 -38.27963 -36.60019 -35.16616 -33.82154 -32.17026 -31.36213 -30.19573 -27.59119 -27.01255 -26.72947 -24.41467 -23.38866 -22.59866 -21.49140 -19.94432 -18.96113 -18.71992 -17.33419 -16.97837 -16.04283 -15.97383 -15.17608 -14.81309 -14.57787 -14.53068 -14.02425 -13.98855 -13.67758 -13.57819 -13.43665 -13.06834 -12.97713 -12.62001 -12.46019 -12.29723 -11.98828 -11.94827 -11.84180 -11.66563 -11.28630 -11.13338 -10.96002 -10.75909 -10.68205 -10.46540 -10.32374 -10.16418 -9.98293 -9.81322 -9.29203 -9.18110 -8.87407 -8.63800 -6.99407 -6.11483 -3.10454 1.92138 2.54748 2.94312 3.50862 3.55531 3.69462 4.29012 4.61039 4.64335 4.70225 4.74058 4.85926 4.88265 4.97530 4.98338 5.04416 5.22449 5.26032 5.30884 5.37365 5.44380 5.48128 5.59682 5.61188 5.64424 5.68300 5.71634 5.73645 5.79637 5.83984 5.87119 5.90537 5.94102 6.16007 6.20005 6.24524 6.35757 6.38306 6.41877 6.52655 6.59857 6.74910 6.84119 7.33675 7.80963 8.09123 8.75060 9.22847 10.09057 10.24408 11.37287 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.017817 B = 0.003147 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.191550 B = 8894.594015 C =10018.744764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.070 4.070 5 C -0.134 4.134 6 C 0.514 3.486 7 O -0.549 6.549 8 N -0.609 5.609 9 C 0.105 3.895 10 C -0.126 4.126 11 C -0.090 4.090 12 H 0.070 0.930 13 C 0.162 3.838 14 N -0.743 5.743 15 C -0.329 4.329 16 H 0.063 0.937 17 C -0.046 4.046 18 N -0.945 5.945 19 Si 1.082 2.918 20 H -0.296 1.296 21 H -0.288 1.288 22 H -0.295 1.295 23 C -0.096 4.096 24 H 0.072 0.928 25 C -0.147 4.147 26 C 0.117 3.883 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.025 0.975 41 H 0.017 0.983 42 H 0.366 0.634 43 H 0.254 0.746 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.089 0.911 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.991 2.034 17.884 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.125 4.125 3 C -0.179 4.179 4 C -0.108 4.108 5 C -0.174 4.174 6 C 0.303 3.697 7 O -0.427 6.427 8 N -0.342 5.342 9 C -0.018 4.018 10 C -0.164 4.164 11 C -0.109 4.109 12 H 0.089 0.911 13 C 0.035 3.965 14 N -0.389 5.389 15 C -0.460 4.460 16 H 0.081 0.919 17 C -0.244 4.244 18 N -0.591 5.591 19 Si 0.913 3.087 20 H -0.223 1.223 21 H -0.214 1.214 22 H -0.222 1.222 23 C -0.116 4.116 24 H 0.091 0.909 25 C -0.205 4.205 26 C -0.005 4.005 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.043 0.957 41 H 0.035 0.965 42 H 0.199 0.801 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.108 0.892 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.263 2.163 16.948 18.978 hybrid contribution -0.598 -0.409 1.285 1.475 sum -8.861 1.754 18.232 20.347 Atomic orbital electron populations 1.23709 0.95225 1.01856 1.02623 1.21798 0.95449 0.95738 0.99470 1.20896 1.00232 0.94435 1.02309 1.20438 1.00802 0.94209 0.95312 1.21664 1.01189 0.95286 0.99242 1.20701 0.79130 0.86796 0.83088 1.90673 1.57811 1.63155 1.31108 1.48182 1.55768 1.23638 1.06629 1.21884 0.98250 0.97499 0.84151 1.21927 0.95298 0.98008 1.01145 1.21355 0.98511 0.96190 0.94840 0.91126 1.20691 0.93222 0.96937 0.85683 1.42392 1.05839 1.82949 1.07723 1.20062 0.88506 1.43149 0.94310 0.91852 1.25752 1.02032 1.00015 0.96565 1.70861 0.98355 1.52511 1.37409 0.83202 0.73533 0.76468 0.75495 1.22342 1.21390 1.22198 1.21450 0.95904 0.98047 0.96212 0.90923 1.21832 1.01192 0.96027 1.01420 1.21694 0.92173 0.84724 1.01939 0.88493 0.88494 0.91268 0.91887 0.91738 0.90637 0.90505 0.88675 0.88865 0.89805 0.91129 0.91668 0.89710 0.95703 0.96513 0.80087 0.93481 0.91348 0.92904 0.92531 0.89217 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.55 13.89 29.01 0.40 -1.14 16 2 C -0.12 -1.05 5.31 -101.07 -0.54 -1.58 16 3 C -0.12 -0.89 10.03 36.01 0.36 -0.53 16 4 C -0.07 -0.67 4.67 -27.88 -0.13 -0.80 16 5 C -0.13 -1.28 4.03 -27.88 -0.11 -1.39 16 6 C 0.51 6.58 7.70 -10.99 -0.08 6.50 16 7 O -0.55 -8.78 15.40 5.55 0.09 -8.69 16 8 N -0.61 -7.50 2.97 -172.75 -0.51 -8.01 16 9 C 0.10 1.18 6.34 -3.71 -0.02 1.16 16 10 C -0.13 -1.77 5.25 -26.61 -0.14 -1.91 16 11 C -0.09 -1.38 1.73 -90.58 -0.16 -1.53 16 12 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 13 C 0.16 3.20 5.41 -4.04 -0.02 3.18 16 14 N -0.74 -18.34 5.32 -59.91 -0.32 -18.65 16 15 C -0.33 -9.26 9.99 -15.06 -0.15 -9.41 16 16 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 17 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 18 N -0.95 -28.89 13.70 55.49 0.76 -28.13 16 19 Si 1.08 25.90 29.92 -169.99 -5.09 20.82 16 20 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.10 -1.27 2.42 -90.49 -0.22 -1.49 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 25 C -0.15 -1.81 8.82 37.16 0.33 -1.48 16 26 C 0.12 1.47 5.72 -3.70 -0.02 1.45 16 27 H 0.10 0.73 7.99 -52.49 -0.42 0.31 16 28 H 0.10 0.66 8.04 -52.49 -0.42 0.24 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.41 8.06 -51.93 -0.42 -0.01 16 31 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.07 0.78 7.94 -51.93 -0.41 0.37 16 33 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 34 H 0.09 0.82 7.69 -51.93 -0.40 0.42 16 35 H 0.09 0.77 7.94 -51.93 -0.41 0.36 16 36 H 0.08 0.77 5.93 -51.93 -0.31 0.46 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.35 7.15 -51.93 -0.37 0.98 16 40 H 0.03 0.51 6.14 -51.93 -0.32 0.19 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.37 9.09 5.68 -40.82 -0.23 8.86 16 43 H 0.25 7.58 6.77 -40.82 -0.28 7.30 16 44 H 0.07 0.91 6.29 -51.93 -0.33 0.59 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.09 1.19 7.00 -51.93 -0.36 0.83 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -32.63 375.29 -8.55 -41.18 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -8.53 Total: 6.27 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -0.60 Total: -10.44 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.07 Total: -54.79 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.09 Total: 20.82 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.63 -8.55 -41.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184498021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.430 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds