Wall clock time and date at job start Fri Apr 10 2020 20:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 120.00190 * 2 1 4 4 C 1.50701 * 120.00041 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.46884 * 95.00155 * 4 2 1 6 6 C 1.50696 * 109.47135 * 180.02562 * 5 4 2 7 7 O 1.21288 * 120.00046 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00259 * 180.02562 * 6 5 4 9 9 C 1.46925 * 120.62931 * 359.97438 * 8 6 5 10 10 C 1.53195 * 108.77572 * 126.37393 * 9 8 6 11 11 C 1.53037 * 109.31347 * 54.63700 * 10 9 8 12 12 H 1.09001 * 109.46101 * 58.64065 * 11 10 9 13 13 C 1.52994 * 109.46344 * 178.61826 * 11 10 9 14 14 N 1.46510 * 109.46884 * 295.00061 * 13 11 10 15 15 C 1.36935 * 119.99776 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00259 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99472 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00240 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99684 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46845 * 90.00337 * 19 17 15 21 21 H 1.48503 * 109.47399 * 209.99827 * 19 17 15 22 22 H 1.48498 * 109.47295 * 330.00433 * 19 17 15 23 23 C 1.53042 * 109.53583 * 298.63580 * 11 10 9 24 24 H 1.08996 * 109.49872 * 301.41342 * 23 11 10 25 25 C 1.52997 * 109.49817 * 181.31442 * 23 11 10 26 26 C 1.46927 * 120.63546 * 179.97438 * 8 6 5 27 27 H 1.08000 * 119.99818 * 180.02562 * 1 2 3 28 28 H 1.07996 * 119.99652 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46947 * 269.99946 * 3 2 1 30 30 H 1.09001 * 109.46962 * 29.99685 * 3 2 1 31 31 H 1.08997 * 109.47477 * 149.99603 * 3 2 1 32 32 H 1.08993 * 109.46957 * 335.00593 * 4 2 1 33 33 H 1.09001 * 109.47398 * 214.99784 * 4 2 1 34 34 H 1.09002 * 109.47474 * 60.00125 * 5 4 2 35 35 H 1.08998 * 109.47273 * 300.00182 * 5 4 2 36 36 H 1.09007 * 109.59004 * 6.58779 * 9 8 6 37 37 H 1.08999 * 109.59131 * 246.16189 * 9 8 6 38 38 H 1.08999 * 109.49759 * 294.68361 * 10 9 8 39 39 H 1.09002 * 109.49678 * 174.58733 * 10 9 8 40 40 H 1.08995 * 109.47727 * 175.00074 * 13 11 10 41 41 H 1.09001 * 109.47087 * 54.99551 * 13 11 10 42 42 H 0.96998 * 119.99423 * 359.97438 * 14 13 11 43 43 H 0.97000 * 119.99789 * 359.97438 * 18 17 15 44 44 H 1.09001 * 109.47261 * 60.00210 * 25 23 11 45 45 H 1.09003 * 109.47512 * 179.97438 * 25 23 11 46 46 H 1.09004 * 109.47527 * 300.00099 * 25 23 11 47 47 H 1.09000 * 109.58078 * 353.41086 * 26 8 6 48 48 H 1.08998 * 109.59173 * 113.83390 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 6 3.1804 -2.9899 -1.4358 7 8 3.4044 -3.5604 -0.3892 8 7 3.6058 -3.5229 -2.5983 9 6 3.3426 -2.8433 -3.8741 10 6 4.6686 -2.6645 -4.6202 11 6 5.3566 -4.0240 -4.7626 12 1 4.7012 -4.7081 -5.3016 13 6 6.6648 -3.8547 -5.5375 14 7 6.3693 -3.4245 -6.9065 15 6 7.3913 -3.2078 -7.7918 16 1 8.4152 -3.3536 -7.4807 17 6 7.1111 -2.8007 -9.0890 18 7 5.8633 -2.6235 -9.4681 19 14 8.5053 -2.5045 -10.2964 20 1 8.8078 -3.7644 -11.0220 21 1 8.1032 -1.4572 -11.2696 22 1 9.7131 -2.0564 -9.5578 23 6 5.6566 -4.5936 -3.3741 24 1 6.2918 -3.8985 -2.8252 25 6 6.3738 -5.9375 -3.5175 26 6 4.3416 -4.7945 -2.6140 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5399 0.9353 -0.0004 29 1 2.2452 1.6197 -1.0276 30 1 1.4745 2.0648 0.5138 31 1 3.0159 1.1748 0.5139 32 1 1.4386 -2.0852 0.4351 33 1 2.9743 -1.1986 0.5899 34 1 3.0524 -0.9043 -1.8710 35 1 1.5168 -1.7910 -2.0257 36 1 2.8963 -1.8673 -3.6830 37 1 2.6631 -3.4466 -4.4761 38 1 5.3131 -1.9875 -4.0596 39 1 4.4762 -2.2488 -5.6093 40 1 7.1981 -4.8049 -5.5625 41 1 7.2835 -3.1036 -5.0463 42 1 5.4496 -3.2939 -7.1859 43 1 5.1393 -2.7778 -8.8412 44 1 7.3078 -5.7947 -4.0610 45 1 6.5877 -6.3426 -2.5284 46 1 5.7373 -6.6325 -4.0653 47 1 4.5545 -5.1060 -1.5913 48 1 3.7434 -5.5568 -3.1132 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184498021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:40 Heat of formation + Delta-G solvation = -50.119181 kcal Electronic energy + Delta-G solvation = -24138.610169 eV Core-core repulsion = 20806.376583 eV Total energy + Delta-G solvation = -3332.233586 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.45960 -39.43894 -37.34434 -36.79233 -35.18996 -33.56681 -32.16348 -31.88582 -28.26881 -28.18610 -27.90361 -25.68763 -24.97808 -23.78717 -22.85484 -21.13508 -19.99143 -19.43872 -19.29823 -17.97349 -17.06435 -16.91726 -16.78305 -16.01408 -15.72246 -15.57289 -15.44603 -15.22293 -14.93993 -14.58714 -14.44486 -14.34512 -13.96135 -13.87298 -13.47465 -13.20626 -13.13444 -12.92411 -12.73336 -12.66605 -12.57986 -12.53211 -12.09877 -11.96707 -11.89480 -11.83557 -11.79147 -11.61498 -11.42212 -11.13401 -10.93079 -10.80668 -9.92080 -9.69780 -9.07985 -8.39143 -5.32307 1.29750 1.55986 1.58645 1.68733 1.83217 1.98865 2.70887 3.39825 3.41756 3.58260 3.67961 3.76975 3.93780 3.95097 4.03007 4.07823 4.14732 4.25871 4.30893 4.36050 4.44863 4.54604 4.59887 4.60942 4.67633 4.69091 4.74882 4.79964 4.85528 4.92096 4.95371 5.01457 5.03816 5.08589 5.12175 5.13559 5.17082 5.21243 5.28484 5.43214 5.53420 5.59517 5.75066 5.98219 6.35430 6.51808 7.09936 7.11285 8.01877 8.12771 9.13297 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.017817 B = 0.003147 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.191550 B = 8894.594015 C =10018.744764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 C -0.122 4.122 4 C -0.066 4.066 5 C -0.128 4.128 6 C 0.511 3.489 7 O -0.585 6.585 8 N -0.610 5.610 9 C 0.112 3.888 10 C -0.121 4.121 11 C -0.080 4.080 12 H 0.068 0.932 13 C 0.162 3.838 14 N -0.753 5.753 15 C -0.335 4.335 16 H 0.061 0.939 17 C -0.102 4.102 18 N -0.973 5.973 19 Si 1.128 2.872 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.276 1.276 23 C -0.086 4.086 24 H 0.064 0.936 25 C -0.144 4.144 26 C 0.120 3.880 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.023 0.977 41 H 0.008 0.992 42 H 0.363 0.637 43 H 0.246 0.754 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.083 0.917 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.516 2.423 18.274 20.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.134 4.134 3 C -0.179 4.179 4 C -0.104 4.104 5 C -0.167 4.167 6 C 0.301 3.699 7 O -0.466 6.466 8 N -0.342 5.342 9 C -0.010 4.010 10 C -0.159 4.159 11 C -0.098 4.098 12 H 0.086 0.914 13 C 0.036 3.964 14 N -0.398 5.398 15 C -0.467 4.467 16 H 0.079 0.921 17 C -0.293 4.293 18 N -0.621 5.621 19 Si 0.953 3.047 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.202 1.202 23 C -0.106 4.106 24 H 0.082 0.918 25 C -0.202 4.202 26 C -0.003 4.003 27 H 0.116 0.884 28 H 0.127 0.873 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.026 0.974 42 H 0.196 0.804 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.102 0.898 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.784 2.540 17.369 19.629 hybrid contribution -0.420 -0.563 1.232 1.418 sum -9.205 1.977 18.602 20.848 Atomic orbital electron populations 1.23858 0.95088 1.02547 1.01537 1.21796 0.95680 0.95484 1.00461 1.20912 1.00140 0.94094 1.02731 1.20356 1.00164 0.94701 0.95146 1.21695 1.01727 0.93672 0.99637 1.21263 0.78734 0.87433 0.82458 1.90658 1.59282 1.64323 1.32327 1.48260 1.55448 1.23490 1.06969 1.21903 0.96604 0.99131 0.83385 1.21833 0.96802 0.96854 1.00445 1.21236 0.96126 0.97158 0.95328 0.91357 1.20811 0.95603 0.96062 0.83918 1.42555 1.05095 1.83010 1.09137 1.20381 0.89222 1.42023 0.95034 0.92119 1.27129 1.03325 1.00124 0.98725 1.70962 0.99010 1.54570 1.37589 0.82610 0.71710 0.76596 0.73773 1.21194 1.21756 1.20153 1.21343 0.96456 0.98208 0.94612 0.91781 1.21803 1.00425 0.95628 1.02357 1.21636 0.91840 0.85344 1.01445 0.88357 0.87305 0.90772 0.91023 0.92014 0.91728 0.91844 0.87315 0.86913 0.87155 0.90011 0.92270 0.91665 0.95869 0.97415 0.80441 0.94373 0.92723 0.91160 0.92038 0.89827 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.64 13.89 67.78 0.94 -1.70 16 2 C -0.13 -2.03 5.31 -16.49 -0.09 -2.12 16 3 C -0.12 -1.57 10.03 71.24 0.71 -0.85 16 4 C -0.07 -1.20 4.67 29.85 0.14 -1.06 16 5 C -0.13 -2.18 4.03 29.85 0.12 -2.06 16 6 C 0.51 12.36 7.70 87.66 0.67 13.03 16 7 O -0.59 -18.40 15.40 -3.05 -0.05 -18.45 16 8 N -0.61 -13.95 2.97 -818.85 -2.43 -16.38 16 9 C 0.11 2.28 6.34 86.36 0.55 2.83 16 10 C -0.12 -3.32 5.25 30.67 0.16 -3.16 16 11 C -0.08 -2.39 1.73 -10.77 -0.02 -2.41 16 12 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 13 C 0.16 6.44 5.41 86.38 0.47 6.91 16 14 N -0.75 -37.50 5.32 -343.45 -1.83 -39.32 16 15 C -0.34 -18.91 9.99 84.03 0.84 -18.07 16 16 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 17 C -0.10 -5.86 5.50 84.86 0.47 -5.39 16 18 N -0.97 -59.88 13.70 21.65 0.30 -59.59 16 19 Si 1.13 51.79 29.92 68.60 2.05 53.84 16 20 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 23 C -0.09 -2.20 2.42 -10.71 -0.03 -2.22 16 24 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 25 C -0.14 -3.40 8.82 71.98 0.63 -2.76 16 26 C 0.12 2.83 5.72 86.37 0.49 3.33 16 27 H 0.10 1.30 7.99 -2.91 -0.02 1.28 16 28 H 0.11 1.22 8.04 -2.91 -0.02 1.20 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.79 8.06 -2.39 -0.02 0.77 16 31 H 0.06 0.81 8.08 -2.39 -0.02 0.80 16 32 H 0.06 1.30 7.94 -2.39 -0.02 1.28 16 33 H 0.06 1.31 8.05 -2.39 -0.02 1.29 16 34 H 0.11 1.60 7.69 -2.39 -0.02 1.58 16 35 H 0.11 1.52 7.94 -2.39 -0.02 1.50 16 36 H 0.11 1.69 5.93 -2.38 -0.01 1.68 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 2.07 7.15 -2.39 -0.02 2.05 16 40 H 0.02 0.94 6.14 -2.39 -0.01 0.93 16 41 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.36 18.33 5.68 -92.71 -0.53 17.80 16 43 H 0.25 14.92 6.77 -92.71 -0.63 14.29 16 44 H 0.05 1.43 6.29 -2.39 -0.02 1.42 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 47 H 0.08 2.14 7.00 -2.39 -0.02 2.12 16 48 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -69.85 375.29 4.64 -65.21 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.53 Total: 30.41 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 6.07 Total: -15.72 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -3.96 Total: -115.29 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.05 Total: -18.45 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.05 Total: 53.84 kcal Total: -69.85 4.64 -65.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184498021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.086 kcal (2) G-P(sol) polarization free energy of solvation -69.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds