Wall clock time and date at job start Fri Apr 10 2020 20:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50703 * 120.00090 * 2 1 4 4 C 1.50706 * 119.99888 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.46953 * 95.00144 * 4 2 1 6 6 C 1.50706 * 109.46573 * 179.97438 * 5 4 2 7 7 O 1.21274 * 120.00042 * 359.72068 * 6 5 4 8 8 N 1.34777 * 119.99766 * 179.97438 * 6 5 4 9 9 C 1.46934 * 120.63116 * 0.02562 * 8 6 5 10 10 C 1.53183 * 108.77358 * 233.58273 * 9 8 6 11 11 C 1.53036 * 109.31530 * 305.36258 * 10 9 8 12 12 H 1.09002 * 109.46359 * 301.34566 * 11 10 9 13 13 C 1.53002 * 109.46225 * 181.37471 * 11 10 9 14 14 N 1.46496 * 109.47127 * 64.99994 * 13 11 10 15 15 C 1.36939 * 119.99908 * 180.02562 * 14 13 11 16 16 H 1.08004 * 119.99963 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99827 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00423 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99729 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47220 * 60.00152 * 19 17 15 21 21 H 1.48498 * 109.46918 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47042 * 299.99897 * 19 17 15 23 23 C 1.53037 * 109.53626 * 61.36923 * 11 10 9 24 24 H 1.09009 * 109.49946 * 178.68735 * 23 11 10 25 25 C 1.52996 * 109.50205 * 58.61875 * 23 11 10 26 26 C 1.46921 * 120.63090 * 179.71728 * 8 6 5 27 27 H 1.08002 * 120.00109 * 0.02562 * 1 2 3 28 28 H 1.08004 * 120.00378 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47039 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46975 * 299.99952 * 3 2 1 31 31 H 1.09002 * 109.46795 * 60.00631 * 3 2 1 32 32 H 1.09000 * 109.46974 * 334.99892 * 4 2 1 33 33 H 1.09001 * 109.46547 * 214.99982 * 4 2 1 34 34 H 1.09000 * 109.47486 * 60.00062 * 5 4 2 35 35 H 1.09001 * 109.47362 * 299.99339 * 5 4 2 36 36 H 1.09003 * 109.58631 * 353.37343 * 9 8 6 37 37 H 1.08997 * 109.58599 * 113.79181 * 9 8 6 38 38 H 1.09000 * 109.49964 * 65.31945 * 10 9 8 39 39 H 1.09003 * 109.49517 * 185.41426 * 10 9 8 40 40 H 1.08999 * 109.47010 * 185.00378 * 13 11 10 41 41 H 1.09006 * 109.47103 * 305.00176 * 13 11 10 42 42 H 0.97000 * 119.99870 * 0.02562 * 14 13 11 43 43 H 0.96996 * 120.00585 * 180.02562 * 18 17 15 44 44 H 1.08999 * 109.47188 * 60.00030 * 25 23 11 45 45 H 1.08996 * 109.47291 * 180.02562 * 25 23 11 46 46 H 1.09002 * 109.46996 * 300.00057 * 25 23 11 47 47 H 1.09003 * 109.58904 * 246.20607 * 26 8 6 48 48 H 1.08995 * 109.58652 * 6.63001 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4273 -1.6833 -1.4378 6 6 3.1814 -2.9881 -1.4382 7 8 3.4100 -3.5567 -0.3917 8 7 3.6061 -3.5206 -2.6012 9 6 3.3421 -2.8404 -3.8766 10 6 2.6535 -3.8248 -4.8270 11 6 3.5080 -5.0880 -4.9536 12 1 4.4970 -4.8216 -5.3265 13 6 2.8403 -6.0596 -5.9289 14 7 2.8204 -5.4692 -7.2694 15 6 2.2673 -6.1608 -8.3140 16 1 1.8455 -7.1413 -8.1494 17 6 2.2489 -5.6015 -9.5843 18 7 2.7624 -4.4064 -9.7848 19 14 1.4951 -6.5452 -11.0094 20 1 0.0654 -6.8223 -10.7186 21 1 1.5995 -5.7354 -12.2497 22 1 2.2206 -7.8278 -11.1926 23 6 3.6425 -5.7544 -3.5825 24 1 4.2318 -6.6666 -3.6775 25 6 2.2527 -6.0982 -3.0431 26 6 4.3477 -4.7888 -2.6173 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5401 -0.9353 -0.0004 29 1 3.1352 1.1059 0.0005 30 1 1.8002 1.8767 -0.8900 31 1 1.8002 1.8766 0.8901 32 1 1.4385 -2.0857 0.4334 33 1 2.9741 -1.1991 0.5889 34 1 3.0523 -0.9028 -1.8717 35 1 1.5166 -1.7894 -2.0273 36 1 2.6920 -1.9823 -3.7054 37 1 4.2829 -2.5070 -4.3145 38 1 1.6725 -4.0873 -4.4309 39 1 2.5387 -3.3635 -5.8079 40 1 3.4009 -6.9941 -5.9517 41 1 1.8188 -6.2566 -5.6033 42 1 3.1989 -4.5884 -7.4171 43 1 2.7492 -4.0154 -10.6724 44 1 1.7545 -6.7810 -3.7313 45 1 2.3490 -6.5723 -2.0664 46 1 1.6643 -5.1856 -2.9472 47 1 5.3688 -4.6107 -2.9548 48 1 4.3615 -5.2167 -1.6149 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184498024.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:46 Heat of formation + Delta-G solvation = -28.860892 kcal Electronic energy + Delta-G solvation = -24294.654739 eV Core-core repulsion = 20963.342981 eV Total energy + Delta-G solvation = -3331.311758 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.44723 -38.26079 -36.55463 -34.94163 -33.44130 -31.95191 -31.13437 -30.31702 -27.57380 -27.08634 -26.84284 -24.49460 -23.48855 -22.95937 -21.35274 -19.72484 -18.68123 -18.26412 -17.26956 -16.79494 -16.00165 -15.77998 -15.03736 -14.85355 -14.79509 -14.27765 -14.05300 -13.83540 -13.76899 -13.58094 -13.33727 -12.98175 -12.68223 -12.53421 -12.45170 -12.25378 -12.06901 -11.97583 -11.56074 -11.36490 -11.21432 -11.09269 -11.04022 -10.91935 -10.75968 -10.37440 -10.23435 -10.16644 -9.99537 -9.72162 -9.63591 -9.24142 -8.86189 -8.55363 -6.91342 -5.77450 -3.05297 1.95586 2.61842 3.02435 3.43415 3.47909 3.48743 4.34572 4.58286 4.64536 4.76347 4.79325 4.92885 4.97534 5.01852 5.07551 5.16661 5.25555 5.27923 5.36711 5.38117 5.51568 5.54720 5.63202 5.66103 5.67487 5.73578 5.76999 5.81191 5.87419 5.89469 5.95731 6.06458 6.09471 6.22903 6.30112 6.38386 6.39424 6.47273 6.51817 6.63114 6.67605 6.82107 6.94585 7.41635 7.69248 8.16394 8.42135 9.53159 10.11621 10.46262 11.45521 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.003105 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.284490 B = 9015.988541 C = 9830.530405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.069 4.069 5 C -0.134 4.134 6 C 0.514 3.486 7 O -0.550 6.550 8 N -0.606 5.606 9 C 0.105 3.895 10 C -0.128 4.128 11 C -0.088 4.088 12 H 0.071 0.929 13 C 0.158 3.842 14 N -0.732 5.732 15 C -0.238 4.238 16 H 0.068 0.932 17 C -0.014 4.014 18 N -0.935 5.935 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.098 4.098 24 H 0.080 0.920 25 C -0.144 4.144 26 C 0.116 3.884 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.017 0.983 41 H 0.021 0.979 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.065 0.935 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.130 8.335 18.846 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.126 4.126 3 C -0.178 4.178 4 C -0.107 4.107 5 C -0.174 4.174 6 C 0.303 3.697 7 O -0.428 6.428 8 N -0.339 5.339 9 C -0.018 4.018 10 C -0.166 4.166 11 C -0.107 4.107 12 H 0.089 0.911 13 C 0.031 3.969 14 N -0.376 5.376 15 C -0.369 4.369 16 H 0.086 0.914 17 C -0.210 4.210 18 N -0.584 5.584 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.118 4.118 24 H 0.098 0.902 25 C -0.201 4.201 26 C -0.006 4.006 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.035 0.965 41 H 0.039 0.961 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.177 7.910 19.289 20.848 hybrid contribution -0.326 -0.211 -1.161 1.224 sum -0.149 7.699 18.128 19.695 Atomic orbital electron populations 1.23696 0.95305 1.01919 1.02425 1.21790 0.95435 0.95698 0.99665 1.20873 1.00170 0.94712 1.02032 1.20446 1.00719 0.94218 0.95335 1.21660 1.01319 0.95263 0.99159 1.20662 0.79059 0.86833 0.83168 1.90665 1.57792 1.63205 1.31186 1.48146 1.55747 1.23473 1.06520 1.21889 1.00839 0.95537 0.83527 1.21969 0.99069 0.95686 0.99855 1.21298 0.99702 0.95589 0.94128 0.91080 1.20715 0.96810 0.93930 0.85471 1.42373 1.71952 1.20409 1.02888 1.19187 1.30575 0.99461 0.87711 0.91360 1.24715 1.01808 0.96934 0.97529 1.69634 1.50995 1.15936 1.21814 0.86279 0.78997 0.78860 0.82128 1.21318 1.21700 1.21314 1.21548 0.97357 0.98094 0.94774 0.90166 1.21840 0.96522 1.01524 1.00188 1.21764 0.94257 0.83558 1.01046 0.88525 0.88403 0.91919 0.91491 0.91642 0.90645 0.90585 0.88872 0.88747 0.89939 0.91137 0.91380 0.89418 0.96533 0.96105 0.78316 0.93504 0.91973 0.93388 0.92674 0.91645 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.60 13.93 29.02 0.40 -1.20 16 2 C -0.13 -1.06 5.31 -101.06 -0.54 -1.60 16 3 C -0.12 -0.84 10.05 36.01 0.36 -0.48 16 4 C -0.07 -0.67 4.58 -27.88 -0.13 -0.80 16 5 C -0.13 -1.29 4.03 -27.88 -0.11 -1.40 16 6 C 0.51 6.51 7.70 -10.98 -0.08 6.43 16 7 O -0.55 -8.71 15.39 5.56 0.09 -8.63 16 8 N -0.61 -7.33 2.40 -172.48 -0.41 -7.75 16 9 C 0.10 1.18 6.34 -3.71 -0.02 1.15 16 10 C -0.13 -1.80 4.91 -26.62 -0.13 -1.93 16 11 C -0.09 -1.34 1.96 -90.58 -0.18 -1.52 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 13 C 0.16 3.08 5.18 -4.04 -0.02 3.06 16 14 N -0.73 -18.01 5.32 -59.91 -0.32 -18.33 16 15 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 16 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 19 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 C -0.10 -1.28 2.72 -90.26 -0.25 -1.52 16 24 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16 25 C -0.14 -1.90 8.39 37.16 0.31 -1.58 16 26 C 0.12 1.44 5.87 -3.47 -0.02 1.41 16 27 H 0.10 0.69 8.05 -52.49 -0.42 0.26 16 28 H 0.10 0.79 7.99 -52.48 -0.42 0.37 16 29 H 0.06 0.42 8.00 -51.93 -0.42 0.00 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.81 7.95 -51.93 -0.41 0.39 16 33 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.09 0.76 7.94 -51.93 -0.41 0.34 16 35 H 0.09 0.85 7.69 -51.93 -0.40 0.45 16 36 H 0.08 0.77 5.93 -51.93 -0.31 0.46 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.99 6.34 -51.93 -0.33 0.66 16 39 H 0.09 1.43 7.15 -51.93 -0.37 1.06 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 42 H 0.38 9.77 6.85 -40.82 -0.28 9.49 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.06 0.86 6.58 -51.93 -0.34 0.51 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.75 5.98 -51.93 -0.31 0.44 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.09 1.18 7.00 -51.93 -0.36 0.81 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -31.33 373.07 -8.46 -39.78 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -8.48 Total: 6.33 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.65 Total: -7.22 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.01 Total: -53.13 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.33 -8.46 -39.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184498024.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.922 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds