Wall clock time and date at job start Fri Apr 10 2020 20:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50703 * 119.99784 * 2 1 4 4 N 1.46501 * 109.47039 * 125.59772 * 3 2 1 5 5 C 1.46500 * 119.99876 * 274.54993 * 4 3 2 6 6 C 1.50702 * 109.47172 * 271.82299 * 5 4 3 7 7 H 1.07994 * 119.99722 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00060 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00159 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00098 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46818 * 60.00187 * 10 8 6 12 12 H 1.48501 * 109.47501 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47310 * 300.00224 * 10 8 6 14 14 C 1.34778 * 120.00159 * 94.54909 * 4 3 2 15 15 O 1.21274 * 119.99886 * 4.85903 * 14 4 3 16 16 C 1.50701 * 119.99886 * 184.85409 * 14 4 3 17 17 H 1.09003 * 109.46517 * 46.05388 * 16 14 4 18 18 C 1.52997 * 109.47404 * 286.05175 * 16 14 4 19 19 N 1.46898 * 109.46820 * 166.04537 * 16 14 4 20 20 C 1.48007 * 110.99518 * 61.28841 * 19 16 14 21 21 C 1.50438 * 112.83386 * 84.83308 * 20 19 16 22 22 C 1.54312 * 108.50421 * 93.72756 * 21 20 19 23 23 C 1.45888 * 112.17569 * 281.47679 * 22 21 20 24 24 C 1.54302 * 112.18996 * 61.11688 * 23 22 21 25 25 C 1.47999 * 111.00096 * 190.00134 * 19 16 14 26 26 H 1.07998 * 119.99581 * 179.97438 * 1 2 3 27 27 H 1.08002 * 120.00025 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.00264 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47149 * 5.59655 * 3 2 1 30 30 H 1.08998 * 109.46751 * 245.59337 * 3 2 1 31 31 H 1.09002 * 109.47479 * 31.81807 * 5 4 3 32 32 H 1.08998 * 109.47390 * 151.81652 * 5 4 3 33 33 H 0.97000 * 120.00324 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.46976 * 63.93668 * 18 16 14 35 35 H 1.09000 * 109.46873 * 183.93507 * 18 16 14 36 36 H 1.08995 * 109.47020 * 303.93250 * 18 16 14 37 37 H 1.09003 * 108.81091 * 323.96374 * 20 19 16 38 38 H 1.09002 * 108.80887 * 205.69506 * 20 19 16 39 39 H 1.08997 * 109.63617 * 334.01491 * 21 20 19 40 40 H 1.09006 * 109.62795 * 213.42869 * 21 20 19 41 41 H 1.08997 * 108.94092 * 42.17142 * 22 21 20 42 42 H 1.08995 * 108.94176 * 160.78400 * 22 21 20 43 43 H 1.09003 * 108.93584 * 181.81739 * 23 22 21 44 44 H 1.08997 * 108.93850 * 300.41614 * 23 22 21 45 45 H 1.09001 * 109.63417 * 41.15591 * 24 23 22 46 46 H 1.09003 * 109.62817 * 161.74845 * 24 23 22 47 47 H 1.09006 * 108.81184 * 70.48748 * 25 19 16 48 48 H 1.09002 * 108.72353 * 312.15539 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0040 1.3261 1.1231 5 6 2.5530 1.7588 2.4481 6 6 2.7069 3.2531 2.5680 7 1 3.1016 3.8234 1.7401 8 6 2.3439 3.8922 3.7344 9 7 1.8637 3.1977 4.7427 10 14 2.5353 5.7444 3.8832 11 1 1.7174 6.4120 2.8388 12 1 2.0770 6.1832 5.2258 13 1 3.9632 6.1106 3.7030 14 6 4.2840 0.9473 0.9374 15 8 4.6800 0.6736 -0.1757 16 6 5.2232 0.8639 2.1130 17 1 4.7302 0.3460 2.9358 18 6 5.6104 2.2756 2.5577 19 7 6.4313 0.1246 1.7230 20 6 7.1450 0.8160 0.6260 21 6 8.0747 1.8904 1.1204 22 6 9.4842 1.2831 1.2800 23 6 9.6105 0.4987 2.5036 24 6 8.6337 -0.6955 2.5337 25 6 7.2677 -0.1855 2.9039 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9352 0.0004 29 1 1.3595 2.1311 0.1002 30 1 2.6129 1.4074 -0.9358 31 1 1.5051 1.4897 2.5811 32 1 3.1539 1.2690 3.2143 33 1 1.6087 3.6472 5.5635 34 1 4.7236 2.8006 2.9130 35 1 6.3434 2.2149 3.3622 36 1 6.0400 2.8171 1.7149 37 1 6.4109 1.2664 -0.0420 38 1 7.7233 0.0816 0.0653 39 1 7.7251 2.2627 2.0833 40 1 8.1073 2.7069 0.3989 41 1 9.6914 0.6401 0.4246 42 1 10.2169 2.0898 1.2998 43 1 10.6310 0.1231 2.5792 44 1 9.4082 1.1429 3.3592 45 1 8.5960 -1.1627 1.5496 46 1 8.9666 -1.4222 3.2748 47 1 6.7613 -0.9410 3.5047 48 1 7.3802 0.7198 3.5005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293920185.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:03 Heat of formation + Delta-G solvation = -2.980209 kcal Electronic energy + Delta-G solvation = -25789.520343 eV Core-core repulsion = 22459.330856 eV Total energy + Delta-G solvation = -3330.189487 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.11791 -38.39174 -35.55881 -34.59925 -33.42887 -32.20094 -31.93591 -29.81584 -27.54578 -26.37171 -25.72277 -24.64819 -23.09790 -22.25881 -20.36764 -19.79554 -19.28521 -18.09710 -16.70661 -16.56079 -15.83143 -15.53084 -15.12258 -14.63331 -14.57435 -14.47824 -13.81884 -13.57551 -13.30344 -13.14093 -12.78480 -12.65479 -12.41924 -12.22579 -12.10961 -11.79636 -11.48515 -11.40308 -11.27159 -11.13256 -11.02949 -10.88042 -10.79532 -10.69347 -10.47186 -10.41803 -10.20783 -9.99768 -9.91030 -9.74517 -9.08723 -8.67515 -8.51775 -7.75543 -7.63504 -6.24257 -4.29698 2.59521 3.19515 3.25375 3.27189 3.44689 3.86111 4.26553 4.47805 4.80986 4.87052 5.07447 5.10690 5.30151 5.35274 5.41508 5.46567 5.58898 5.64374 5.65749 5.75205 5.82230 5.89603 5.92487 6.01917 6.10260 6.13851 6.18964 6.21704 6.24936 6.30463 6.37090 6.37655 6.43833 6.48732 6.55127 6.70879 6.84031 6.96024 7.06899 7.13940 7.19569 7.51108 7.61330 7.64894 7.71899 8.00911 8.35901 8.74549 9.05843 9.35092 10.81590 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.012326 B = 0.005951 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.040977 B = 4703.908588 C = 6190.315725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.154 4.154 3 C 0.143 3.857 4 N -0.592 5.592 5 C 0.236 3.764 6 C -0.534 4.534 7 H 0.062 0.938 8 C 0.067 3.933 9 N -0.886 5.886 10 Si 0.893 3.107 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.528 3.472 15 O -0.559 6.559 16 C 0.078 3.922 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.532 5.532 20 C 0.048 3.952 21 C -0.162 4.162 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.117 4.117 25 C 0.059 3.941 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.040 0.960 33 H 0.267 0.733 34 H 0.123 0.877 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.105 0.895 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.224 -4.771 -3.524 10.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.173 4.173 3 C 0.020 3.980 4 N -0.322 5.322 5 C 0.116 3.884 6 C -0.572 4.572 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.524 5.524 10 Si 0.720 3.280 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.316 3.684 15 O -0.440 6.440 16 C -0.033 4.033 17 H 0.117 0.883 18 C -0.262 4.262 19 N -0.256 5.256 20 C -0.079 4.079 21 C -0.200 4.200 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.155 4.155 25 C -0.068 4.068 26 H 0.110 0.890 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.141 0.859 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.123 0.877 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.214 -5.324 -4.062 10.598 hybrid contribution 0.283 1.773 0.729 1.937 sum 8.497 -3.551 -3.334 9.794 Atomic orbital electron populations 1.23755 0.95796 1.01493 1.02058 1.23387 0.96065 0.99306 0.98562 1.20392 0.92066 0.94624 0.90963 1.48163 1.08378 1.63477 1.12200 1.19475 0.96440 0.94878 0.77582 1.21386 1.43444 0.92341 1.00074 0.91958 1.24933 0.94703 0.98455 0.95584 1.69910 1.41987 1.36018 1.04476 0.86636 0.78825 0.85181 0.77375 1.20068 1.21103 1.19986 1.20279 0.82530 0.75819 0.89762 1.90471 1.75809 1.51767 1.25955 1.21394 0.90844 0.95140 0.95931 0.88334 1.22974 1.05630 0.96807 1.00837 1.61763 1.06690 1.47586 1.09585 1.22183 0.97160 0.94646 0.93920 1.22353 0.95497 0.99364 1.02836 1.20568 0.97505 0.99075 0.98298 1.20591 0.99084 0.97274 0.98646 1.21391 0.94182 0.97353 1.02595 1.21780 0.93196 0.99643 0.92171 0.88962 0.88488 0.87878 0.90122 0.89918 0.94643 0.94222 0.92357 0.85910 0.93127 0.92727 0.87749 0.92088 0.90349 0.92045 0.92407 0.92984 0.92665 0.92411 0.90774 0.91529 0.91534 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.84 14.32 29.01 0.42 -2.42 16 2 C -0.15 -2.57 9.85 -36.03 -0.35 -2.92 16 3 C 0.14 2.65 5.94 -5.19 -0.03 2.62 16 4 N -0.59 -12.26 2.44 -176.43 -0.43 -12.69 16 5 C 0.24 5.41 4.71 -5.19 -0.02 5.38 16 6 C -0.53 -13.10 6.55 -34.44 -0.23 -13.32 16 7 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -23.47 13.29 55.43 0.74 -22.74 16 10 Si 0.89 19.84 29.54 -169.99 -5.02 14.82 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 14 C 0.53 10.93 6.72 -10.98 -0.07 10.85 16 15 O -0.56 -12.32 13.08 5.56 0.07 -12.25 16 16 C 0.08 1.47 1.90 -68.87 -0.13 1.34 16 17 H 0.10 1.89 6.75 -51.93 -0.35 1.54 16 18 C -0.20 -3.84 7.23 37.16 0.27 -3.57 16 19 N -0.53 -9.01 4.57 -229.31 -1.05 -10.06 16 20 C 0.05 0.79 4.18 -4.49 -0.02 0.77 16 21 C -0.16 -2.32 4.40 -27.32 -0.12 -2.44 16 22 C -0.12 -1.40 5.30 -29.41 -0.16 -1.56 16 23 C -0.12 -1.34 5.30 -29.42 -0.16 -1.50 16 24 C -0.12 -1.41 5.63 -27.33 -0.15 -1.57 16 25 C 0.06 0.85 4.91 -4.50 -0.02 0.83 16 26 H 0.09 1.18 8.06 -52.49 -0.42 0.76 16 27 H 0.10 1.38 7.84 -52.49 -0.41 0.97 16 28 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.08 1.48 7.76 -51.93 -0.40 1.08 16 30 H 0.08 1.54 7.23 -51.93 -0.38 1.17 16 31 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 32 H 0.04 0.94 5.79 -51.93 -0.30 0.64 16 33 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 34 H 0.12 2.67 4.10 -51.93 -0.21 2.46 16 35 H 0.05 0.87 5.67 -51.93 -0.29 0.58 16 36 H 0.05 1.02 5.94 -51.93 -0.31 0.71 16 37 H 0.10 2.01 4.94 -51.93 -0.26 1.75 16 38 H 0.06 0.97 6.59 -51.93 -0.34 0.63 16 39 H 0.08 1.20 4.09 -51.93 -0.21 0.98 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.68 7.52 -51.93 -0.39 0.29 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.67 7.52 -51.93 -0.39 0.28 16 45 H 0.07 0.95 7.08 -51.93 -0.37 0.59 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.04 0.56 4.74 -51.93 -0.25 0.31 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -26.20 351.22 -9.07 -35.27 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -7.79 Total: 8.27 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -0.88 Total: -5.92 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.74 Total: -45.49 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.07 Total: -12.25 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -26.20 -9.07 -35.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293920185.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.288 kcal (2) G-P(sol) polarization free energy of solvation -26.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds