Wall clock time and date at job start Fri Apr 10 2020 20:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47012 * 2 1 4 4 C 1.36940 * 119.99875 * 275.54473 * 3 2 1 5 5 H 1.08001 * 119.99654 * 143.32524 * 4 3 2 6 6 C 1.38810 * 120.00513 * 323.33702 * 4 3 2 7 7 N 1.31614 * 120.00477 * 161.63766 * 6 4 3 8 8 Si 1.86805 * 119.99680 * 341.63083 * 6 4 3 9 9 H 1.48499 * 109.47009 * 95.76355 * 8 6 4 10 10 H 1.48498 * 109.47215 * 215.76704 * 8 6 4 11 11 H 1.48505 * 109.47083 * 335.76696 * 8 6 4 12 12 C 1.46492 * 120.00084 * 95.55054 * 3 2 1 13 13 H 1.09003 * 109.47209 * 186.26355 * 12 3 2 14 14 C 1.53003 * 109.46962 * 306.25960 * 12 3 2 15 15 C 1.50698 * 109.47639 * 66.26408 * 12 3 2 16 16 O 1.21291 * 119.99348 * 330.91144 * 15 12 3 17 17 N 1.34772 * 120.00598 * 150.91021 * 15 12 3 18 18 C 1.46498 * 120.00043 * 180.02562 * 17 15 12 19 19 C 1.52997 * 109.47116 * 180.02562 * 18 17 15 20 20 C 1.50698 * 109.47671 * 179.97438 * 19 18 17 21 21 C 1.29445 * 117.96438 * 94.72801 * 20 19 18 22 22 C 1.50061 * 124.07777 * 180.23996 * 21 20 19 23 23 C 1.53017 * 110.20295 * 343.32486 * 22 21 20 24 24 C 1.53391 * 108.43869 * 49.24480 * 23 22 21 25 25 C 1.50069 * 117.96159 * 275.00461 * 20 19 18 26 26 H 1.09001 * 109.47322 * 54.14980 * 1 2 3 27 27 H 1.09007 * 109.47040 * 174.14712 * 1 2 3 28 28 H 1.08996 * 109.47008 * 294.14715 * 1 2 3 29 29 H 1.08991 * 109.47279 * 119.99983 * 2 1 3 30 30 H 1.09004 * 109.47012 * 240.00377 * 2 1 3 31 31 H 0.97000 * 120.00442 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.46646 * 60.00637 * 14 12 3 33 33 H 1.09004 * 109.47051 * 180.02562 * 14 12 3 34 34 H 1.09000 * 109.47397 * 299.99898 * 14 12 3 35 35 H 0.96995 * 119.99582 * 0.02562 * 17 15 12 36 36 H 1.09007 * 109.46885 * 299.99768 * 18 17 15 37 37 H 1.08995 * 109.47676 * 59.99860 * 18 17 15 38 38 H 1.09005 * 109.47142 * 299.99975 * 19 18 17 39 39 H 1.09003 * 109.47777 * 59.99387 * 19 18 17 40 40 H 1.08007 * 117.96036 * 0.47655 * 21 20 19 41 41 H 1.09000 * 109.48228 * 222.99502 * 22 21 20 42 42 H 1.09004 * 109.17427 * 103.45405 * 22 21 20 43 43 H 1.09000 * 109.64085 * 289.56211 * 23 22 21 44 44 H 1.09003 * 109.81790 * 169.03336 * 23 22 21 45 45 H 1.09001 * 109.64139 * 172.88654 * 24 23 22 46 46 H 1.08997 * 109.64510 * 52.25180 * 24 23 22 47 47 H 1.09005 * 109.35057 * 283.04612 * 25 20 19 48 48 H 1.08997 * 109.36080 * 42.76573 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1385 2.0649 -1.1804 5 1 1.9124 3.1203 -1.2185 6 6 2.5507 1.4016 -2.3280 7 7 2.3283 1.9332 -3.5112 8 14 3.4213 -0.2457 -2.1928 9 1 2.4341 -1.3424 -2.3600 10 1 4.4574 -0.3464 -3.2518 11 1 4.0643 -0.3577 -0.8589 12 6 2.3782 2.0309 1.2627 13 1 2.6105 3.0798 1.0784 14 6 1.2045 1.9326 2.2394 15 6 3.5830 1.3461 1.8546 16 8 3.7817 0.1702 1.6335 17 7 4.4398 2.0402 2.6295 18 6 5.6114 1.3745 3.2044 19 6 6.4117 2.3789 4.0359 20 6 7.6166 1.6941 4.6279 21 6 8.7377 1.7759 3.9859 22 6 10.0183 1.1435 4.4463 23 6 9.9193 0.7665 5.9260 24 6 8.6117 -0.0052 6.1437 25 6 7.4406 0.9545 5.9217 26 1 -0.3634 0.6019 -0.8330 27 1 -0.3633 -1.0224 -0.1048 28 1 -0.3633 0.4204 0.9377 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 2.6161 1.4695 -4.3132 32 1 0.9723 0.8837 2.4238 33 1 1.4721 2.4164 3.1788 34 1 0.3331 2.4280 1.8113 35 1 4.2807 2.9805 2.8066 36 1 5.2857 0.5529 3.8424 37 1 6.2382 0.9852 2.4022 38 1 6.7373 3.2009 3.3983 39 1 5.7847 2.7680 4.8382 40 1 8.7531 2.3372 3.0633 41 1 10.8409 1.8447 4.3062 42 1 10.2067 0.2463 3.8567 43 1 9.9170 1.6704 6.5351 44 1 10.7659 0.1390 6.2049 45 1 8.5799 -0.3925 7.1621 46 1 8.5498 -0.8292 5.4330 47 1 7.3985 1.6693 6.7436 48 1 6.5112 0.3859 5.8894 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298094801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:09 Heat of formation + Delta-G solvation = -19.981409 kcal Electronic energy + Delta-G solvation = -24354.011018 eV Core-core repulsion = 21023.084303 eV Total energy + Delta-G solvation = -3330.926714 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.45623 -38.84417 -36.22769 -34.93462 -32.73335 -32.01927 -31.00173 -30.85387 -28.77968 -28.17574 -24.44223 -23.79507 -23.28930 -22.55960 -21.49551 -21.13532 -19.37408 -17.73576 -16.87029 -16.22019 -15.98570 -15.59495 -15.31511 -15.04449 -14.58268 -14.29922 -14.02703 -13.82446 -13.53644 -13.13753 -12.87367 -12.74009 -12.60830 -12.53693 -12.30849 -12.16028 -11.91716 -11.85003 -11.73185 -11.38232 -11.30519 -11.11785 -11.04265 -10.66525 -10.61743 -10.45537 -10.35589 -10.20050 -9.66338 -9.47929 -8.96309 -8.79173 -8.62212 -8.47005 -6.82734 -5.96307 -3.41612 2.04608 3.34703 3.43951 3.57507 3.66370 3.81071 4.44297 4.49841 4.61968 4.65516 4.91414 4.99855 5.02609 5.06580 5.17228 5.19229 5.33587 5.34411 5.37909 5.50324 5.54943 5.60814 5.66551 5.71674 5.78941 5.79887 5.85485 5.92781 6.00745 6.06344 6.08445 6.11085 6.16050 6.39352 6.46962 6.48481 6.51244 6.69042 6.73176 6.85146 6.89840 6.95084 7.26911 7.96554 8.07847 8.36604 8.88202 9.00293 9.72926 10.11695 11.17721 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.020476 B = 0.003508 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.098231 B = 7980.975164 C = 8552.917261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.134 3.866 3 N -0.580 5.580 4 C -0.274 4.274 5 H 0.082 0.918 6 C 0.040 3.960 7 N -0.902 5.902 8 Si 0.877 3.123 9 H -0.288 1.288 10 H -0.309 1.309 11 H -0.247 1.247 12 C 0.157 3.843 13 H 0.088 0.912 14 C -0.151 4.151 15 C 0.492 3.508 16 O -0.535 6.535 17 N -0.743 5.743 18 C 0.126 3.874 19 C -0.098 4.098 20 C -0.117 4.117 21 C -0.154 4.154 22 C -0.090 4.090 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.083 4.083 26 H 0.060 0.940 27 H 0.036 0.964 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.263 0.737 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.395 0.605 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.226 0.869 20.594 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.010 3.990 3 N -0.301 5.301 4 C -0.402 4.402 5 H 0.099 0.901 6 C -0.161 4.161 7 N -0.543 5.543 8 Si 0.708 3.292 9 H -0.216 1.216 10 H -0.238 1.238 11 H -0.171 1.171 12 C 0.045 3.955 13 H 0.106 0.894 14 C -0.211 4.211 15 C 0.278 3.722 16 O -0.410 6.410 17 N -0.397 5.397 18 C 0.002 3.998 19 C -0.136 4.136 20 C -0.118 4.118 21 C -0.173 4.173 22 C -0.127 4.127 23 C -0.158 4.158 24 C -0.159 4.159 25 C -0.120 4.120 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.228 0.772 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.370 -0.016 20.204 22.710 hybrid contribution 0.552 -0.457 -0.200 0.744 sum 10.923 -0.473 20.003 22.796 Atomic orbital electron populations 1.22337 0.99075 0.99533 1.01600 1.21126 0.91972 0.86070 0.99863 1.44061 1.72512 1.11824 1.01662 1.18810 1.41398 0.95686 0.84322 0.90085 1.25430 0.97101 0.98301 0.95285 1.69817 1.47167 1.40068 0.97250 0.86930 0.79687 0.84165 0.78371 1.21636 1.23759 1.17111 1.20583 0.89729 0.97187 0.87983 0.89440 1.22185 0.98971 1.02126 0.97776 1.22876 0.85029 0.87868 0.76468 1.90603 1.75298 1.16766 1.58342 1.46404 1.26305 1.14066 1.52961 1.21166 0.87099 0.95056 0.96508 1.20948 0.95432 0.97929 0.99263 1.20669 0.94534 0.99700 0.96874 1.21967 0.94272 1.01227 0.99784 1.20422 0.95829 1.00349 0.96059 1.21597 0.97605 1.00208 0.96345 1.21611 0.94550 0.98171 1.01537 1.20400 0.98968 0.97677 0.94972 0.92068 0.94522 0.93572 0.92056 0.94272 0.92701 0.92463 0.93274 0.91363 0.77154 0.92164 0.92094 0.90808 0.90830 0.87783 0.91205 0.90956 0.91868 0.91873 0.91751 0.91625 0.90992 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 9.96 37.16 0.37 -3.04 16 2 C 0.13 3.18 4.05 -4.04 -0.02 3.16 16 3 N -0.58 -14.03 1.96 -166.99 -0.33 -14.35 16 4 C -0.27 -7.68 9.85 -15.06 -0.15 -7.82 16 5 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 6 C 0.04 1.19 5.38 -17.43 -0.09 1.09 16 7 N -0.90 -28.00 13.97 55.49 0.78 -27.22 16 8 Si 0.88 24.03 24.74 -169.99 -4.21 19.82 16 9 H -0.29 -7.75 6.78 56.52 0.38 -7.37 16 10 H -0.31 -8.53 7.11 56.52 0.40 -8.13 16 11 H -0.25 -7.01 6.39 56.52 0.36 -6.65 16 12 C 0.16 3.06 3.10 -69.09 -0.21 2.85 16 13 H 0.09 1.61 7.90 -51.93 -0.41 1.20 16 14 C -0.15 -2.41 8.05 37.16 0.30 -2.11 16 15 C 0.49 9.65 7.00 -10.99 -0.08 9.57 16 16 O -0.54 -12.69 13.73 5.55 0.08 -12.62 16 17 N -0.74 -11.04 5.56 -60.30 -0.33 -11.38 16 18 C 0.13 1.72 5.66 -4.04 -0.02 1.70 16 19 C -0.10 -0.98 5.33 -27.89 -0.15 -1.13 16 20 C -0.12 -1.15 5.09 -100.94 -0.51 -1.67 16 21 C -0.15 -1.52 9.37 -35.90 -0.34 -1.86 16 22 C -0.09 -0.75 6.11 -28.18 -0.17 -0.92 16 23 C -0.12 -0.90 6.01 -26.52 -0.16 -1.06 16 24 C -0.12 -0.97 6.01 -26.52 -0.16 -1.13 16 25 C -0.08 -0.72 5.80 -28.18 -0.16 -0.88 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.84 6.20 -51.93 -0.32 0.51 16 29 H 0.06 1.43 5.92 -51.93 -0.31 1.12 16 30 H 0.04 1.03 2.61 -51.93 -0.14 0.90 16 31 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 32 H 0.06 0.95 6.53 -51.93 -0.34 0.61 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 35 H 0.40 4.61 8.47 -40.82 -0.35 4.26 16 36 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.72 7.80 -51.93 -0.41 0.31 16 39 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 40 H 0.10 1.05 7.74 -52.48 -0.41 0.64 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.58 8.12 -51.93 -0.42 0.15 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -33.86 368.45 -8.64 -42.50 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.62 Total: 0.94 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.56 Total: -3.24 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.11 Total: -52.95 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -4.21 Total: 19.82 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.86 -8.64 -42.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298094801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.514 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds