Wall clock time and date at job start Fri Apr 10 2020 20:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47265 * 2 1 4 4 C 1.50705 * 109.46800 * 240.00043 * 2 1 3 5 5 O 1.21283 * 119.99932 * 245.45337 * 4 2 1 6 6 N 1.34774 * 120.00113 * 65.45554 * 4 2 1 7 7 C 1.46928 * 120.62887 * 5.18957 * 6 4 2 8 8 C 1.53622 * 108.54500 * 126.37032 * 7 6 4 9 9 C 1.53039 * 109.24081 * 54.85218 * 8 7 6 10 10 C 1.53040 * 109.53915 * 298.51342 * 9 8 7 11 11 C 1.46921 * 120.62829 * 185.46645 * 6 4 2 12 12 N 1.46904 * 109.47259 * 120.00354 * 2 1 3 13 13 C 1.46851 * 111.00089 * 59.20562 * 12 2 1 14 14 C 1.53032 * 109.52045 * 174.16305 * 13 12 2 15 15 C 1.53118 * 109.27974 * 59.18243 * 14 13 12 16 16 C 1.50706 * 109.52542 * 182.44065 * 15 14 13 17 17 H 1.07992 * 119.99994 * 119.67985 * 16 15 14 18 18 C 1.37878 * 119.99692 * 299.68020 * 16 15 14 19 19 N 1.31522 * 119.99882 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00038 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46898 * 90.00266 * 20 18 16 22 22 H 1.48498 * 109.47538 * 210.00188 * 20 18 16 23 23 H 1.48499 * 109.47364 * 330.00460 * 20 18 16 24 24 C 1.53122 * 109.15975 * 302.34119 * 15 14 13 25 25 C 1.46847 * 110.99558 * 294.99786 * 12 2 1 26 26 H 1.08998 * 109.47305 * 174.70070 * 1 2 3 27 27 H 1.08994 * 109.46967 * 294.70028 * 1 2 3 28 28 H 1.08997 * 109.47093 * 54.70148 * 1 2 3 29 29 H 1.09007 * 109.58335 * 246.19976 * 7 6 4 30 30 H 1.08994 * 109.58521 * 6.62172 * 7 6 4 31 31 H 1.08999 * 109.63216 * 294.86507 * 8 7 6 32 32 H 1.08998 * 109.43321 * 174.72291 * 8 7 6 33 33 H 1.09002 * 109.45952 * 178.49166 * 9 8 7 34 34 H 1.09000 * 109.44950 * 58.52842 * 9 8 7 35 35 H 1.09007 * 109.49794 * 301.40984 * 10 9 8 36 36 H 1.09007 * 109.49669 * 181.32106 * 10 9 8 37 37 H 1.09002 * 109.59229 * 353.37715 * 11 6 4 38 38 H 1.09002 * 109.58848 * 113.79915 * 11 6 4 39 39 H 1.09000 * 109.46001 * 294.18217 * 13 12 2 40 40 H 1.08996 * 109.46187 * 54.14650 * 13 12 2 41 41 H 1.08995 * 109.50611 * 299.23871 * 14 13 12 42 42 H 1.09001 * 109.50128 * 179.11665 * 14 13 12 43 43 H 1.09003 * 109.52593 * 62.24782 * 15 14 13 44 44 H 0.97000 * 119.99762 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.50567 * 297.71438 * 24 15 14 46 46 H 1.09003 * 109.50330 * 177.59231 * 24 15 14 47 47 H 1.09004 * 109.46471 * 305.85533 * 25 12 2 48 48 H 1.09004 * 109.46538 * 65.82139 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6458 -1.7510 -1.1220 6 7 1.7998 -0.1894 -2.4516 7 6 1.1587 1.1248 -2.5949 8 6 2.0485 2.0082 -3.4825 9 6 2.3110 1.2893 -4.8078 10 6 3.0504 -0.0236 -4.5402 11 6 2.1770 -0.9276 -3.6645 12 7 2.0197 -0.6926 1.1994 13 6 1.5335 -2.0776 1.2428 14 6 2.1777 -2.8090 2.4226 15 6 1.8223 -2.0825 3.7228 16 6 2.5029 -2.7633 4.8824 17 1 3.2039 -2.2153 5.4943 18 6 2.2306 -4.0857 5.1618 19 7 1.3772 -4.7531 4.4161 20 14 3.0747 -4.9297 6.5986 21 1 2.2537 -4.7597 7.8243 22 1 3.2279 -6.3767 6.3022 23 1 4.4136 -4.3236 6.8116 24 6 2.2966 -0.6295 3.6325 25 6 1.6489 0.0388 2.4176 26 1 -0.3634 -1.0232 -0.0949 27 1 -0.3633 0.4294 0.9336 28 1 -0.3633 0.5938 -0.8387 29 1 0.1795 1.0050 -3.0587 30 1 1.0467 1.5857 -1.6136 31 1 2.9958 2.1980 -2.9778 32 1 1.5427 2.9542 -3.6757 33 1 2.9200 1.9245 -5.4511 34 1 1.3618 1.0777 -5.3001 35 1 3.9883 0.1853 -4.0256 36 1 3.2577 -0.5238 -5.4864 37 1 2.7371 -1.8213 -3.3892 38 1 1.2792 -1.2113 -4.2137 39 1 0.4501 -2.0784 1.3627 40 1 1.7963 -2.5840 0.3142 41 1 3.2602 -2.8204 2.2964 42 1 1.8046 -3.8323 2.4639 43 1 0.7423 -2.1048 3.8691 44 1 1.1854 -5.6834 4.6129 45 1 3.3811 -0.6066 3.5253 46 1 2.0085 -0.0956 4.5381 47 1 1.9957 1.0695 2.3422 48 1 0.5650 0.0280 2.5320 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336356152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:27 Heat of formation + Delta-G solvation = -35.302483 kcal Electronic energy + Delta-G solvation = -25273.654634 eV Core-core repulsion = 21942.063548 eV Total energy + Delta-G solvation = -3331.591086 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.52562 -38.38430 -36.98936 -34.44518 -33.11373 -31.90131 -31.16750 -29.64823 -28.99764 -26.10994 -25.43049 -23.90917 -23.20638 -22.03515 -21.51543 -20.50378 -18.93775 -18.26737 -17.01775 -16.27576 -15.97427 -15.51060 -14.93506 -14.77136 -14.45824 -14.26375 -14.17614 -13.88295 -13.74582 -13.47278 -13.07341 -12.75891 -12.58766 -12.46132 -12.14698 -11.92542 -11.66534 -11.54046 -11.49152 -11.22781 -11.12500 -10.90105 -10.86636 -10.80877 -10.61097 -10.42017 -10.03166 -9.82739 -9.51872 -9.16874 -8.85480 -8.69495 -8.42148 -8.16625 -7.61505 -5.87139 -3.92164 2.78899 2.90381 3.37562 3.44156 3.48116 4.33759 4.49263 4.51281 4.54305 4.59043 4.73103 4.85301 5.02422 5.08553 5.16020 5.25154 5.26068 5.43021 5.47944 5.52608 5.56264 5.61528 5.66794 5.69405 5.76667 5.84339 5.86543 5.97023 6.04734 6.09508 6.27925 6.38332 6.41081 6.56757 6.76210 6.89620 6.99054 7.16414 7.29647 7.37908 7.59322 7.72761 7.83013 7.94951 8.18582 8.30217 8.38242 8.59994 9.11425 9.71454 11.18949 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.033179 B = 0.003433 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.698661 B = 8154.820741 C = 8534.968290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.065 3.935 3 H 0.097 0.903 4 C 0.523 3.477 5 O -0.510 6.510 6 N -0.619 5.619 7 C 0.106 3.894 8 C -0.137 4.137 9 C -0.119 4.119 10 C -0.134 4.134 11 C 0.111 3.889 12 N -0.513 5.513 13 C 0.042 3.958 14 C -0.099 4.099 15 C 0.047 3.953 16 C -0.509 4.509 17 H 0.053 0.947 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.889 3.111 21 H -0.283 1.283 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.105 4.105 25 C 0.059 3.941 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.016 0.984 40 H 0.088 0.912 41 H 0.042 0.958 42 H 0.090 0.910 43 H 0.019 0.981 44 H 0.258 0.742 45 H 0.056 0.944 46 H 0.049 0.951 47 H 0.055 0.945 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.510 14.373 -18.622 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.048 4.048 3 H 0.115 0.885 4 C 0.311 3.689 5 O -0.383 6.383 6 N -0.355 5.355 7 C -0.017 4.017 8 C -0.175 4.175 9 C -0.157 4.157 10 C -0.173 4.173 11 C -0.011 4.011 12 N -0.237 5.237 13 C -0.085 4.085 14 C -0.138 4.138 15 C 0.029 3.971 16 C -0.547 4.547 17 H 0.072 0.928 18 C -0.141 4.141 19 N -0.531 5.531 20 Si 0.717 3.283 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.143 4.143 25 C -0.068 4.068 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.106 0.894 41 H 0.061 0.939 42 H 0.108 0.892 43 H 0.037 0.963 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.725 13.578 -18.568 23.067 hybrid contribution -0.539 -0.338 0.731 0.969 sum -2.263 13.240 -17.837 22.329 Atomic orbital electron populations 1.22505 0.95862 1.03295 1.02874 1.21600 0.93838 0.98548 0.90797 0.88523 1.20665 0.78941 0.85416 0.83911 1.90646 1.38893 1.23478 1.85312 1.48107 1.61971 1.19724 1.05682 1.21914 0.95643 0.83142 1.01036 1.22017 1.00740 0.98372 0.96375 1.21506 1.00602 0.96564 0.96989 1.21911 0.99258 0.96234 0.99873 1.21531 0.98766 0.95773 0.85050 1.62048 1.58996 1.03200 0.99474 1.22655 0.95927 0.87327 1.02544 1.21590 0.98860 1.01013 0.92288 1.18704 0.95900 0.89043 0.93477 1.21214 1.24920 0.95975 1.12627 0.92843 1.24971 0.95214 0.97487 0.96397 1.69894 1.34707 1.09797 1.38658 0.86645 0.80006 0.78754 0.82869 1.20901 1.21337 1.19980 1.21669 1.00085 0.98898 0.93649 1.22179 0.97565 0.96319 0.90756 0.91633 0.91038 0.91925 0.91477 0.89349 0.91300 0.90810 0.91814 0.91854 0.91431 0.90928 0.88894 0.91897 0.96591 0.89384 0.93926 0.89207 0.96321 0.93201 0.92487 0.93210 0.92624 0.95451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 8.10 37.16 0.30 -2.06 16 2 C 0.06 0.95 1.92 -68.86 -0.13 0.82 16 3 H 0.10 1.22 7.11 -51.93 -0.37 0.85 16 4 C 0.52 8.16 6.79 -10.98 -0.07 8.09 16 5 O -0.51 -10.18 13.09 5.55 0.07 -10.10 16 6 N -0.62 -7.19 2.97 -172.50 -0.51 -7.70 16 7 C 0.11 0.86 5.03 -3.49 -0.02 0.84 16 8 C -0.14 -0.93 6.10 -26.39 -0.16 -1.09 16 9 C -0.12 -0.79 5.88 -26.69 -0.16 -0.95 16 10 C -0.13 -1.10 6.08 -26.61 -0.16 -1.26 16 11 C 0.11 1.16 6.44 -3.71 -0.02 1.14 16 12 N -0.51 -9.77 4.47 -228.07 -1.02 -10.79 16 13 C 0.04 0.92 4.49 -3.83 -0.02 0.90 16 14 C -0.10 -2.55 5.12 -26.65 -0.14 -2.69 16 15 C 0.05 1.23 2.16 -91.64 -0.20 1.03 16 16 C -0.51 -14.53 8.56 -34.44 -0.29 -14.82 16 17 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 19 N -0.89 -26.37 11.37 55.43 0.63 -25.74 16 20 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 C -0.11 -2.29 5.32 -26.65 -0.14 -2.43 16 25 C 0.06 1.08 5.03 -3.83 -0.02 1.06 16 26 H 0.06 0.96 6.82 -51.93 -0.35 0.60 16 27 H 0.07 0.91 6.41 -51.93 -0.33 0.58 16 28 H 0.06 0.60 5.88 -51.93 -0.31 0.29 16 29 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 30 H 0.09 0.68 4.93 -51.93 -0.26 0.42 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 36 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.09 1.18 7.00 -51.93 -0.36 0.82 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.35 6.74 -51.93 -0.35 0.00 16 40 H 0.09 2.00 5.12 -51.93 -0.27 1.74 16 41 H 0.04 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.09 2.55 6.17 -51.93 -0.32 2.23 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 48 H 0.03 0.49 6.61 -51.93 -0.34 0.15 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -32.23 349.72 -10.20 -42.44 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -8.30 Total: -0.60 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -1.33 Total: -9.80 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.90 Total: -44.23 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.07 Total: -10.10 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.23 -10.20 -42.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336356152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.134 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds