Wall clock time and date at job start Fri Apr 10 2020 20:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47076 * 2 1 4 4 C 1.50699 * 109.46815 * 119.99782 * 2 1 3 5 5 O 1.21282 * 120.00225 * 95.35413 * 4 2 1 6 6 N 1.34772 * 120.00346 * 275.34489 * 4 2 1 7 7 C 1.46508 * 120.00012 * 0.02562 * 6 4 2 8 8 C 1.46503 * 120.00496 * 179.97438 * 6 4 2 9 9 C 1.50701 * 109.46909 * 89.99990 * 8 6 4 10 10 H 1.08005 * 119.99973 * 0.02562 * 9 8 6 11 11 C 1.37879 * 120.00116 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99829 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00041 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47242 * 90.00423 * 13 11 9 15 15 H 1.48502 * 109.47329 * 210.00120 * 13 11 9 16 16 H 1.48504 * 109.47370 * 330.00213 * 13 11 9 17 17 N 1.46901 * 109.47331 * 240.00085 * 2 1 3 18 18 C 1.46846 * 110.99996 * 52.32146 * 17 2 1 19 19 C 1.53035 * 109.52061 * 185.83987 * 18 17 2 20 20 C 1.53119 * 109.28045 * 300.82055 * 19 18 17 21 21 C 1.53121 * 109.15788 * 57.65557 * 20 19 18 22 22 H 1.09001 * 109.50358 * 62.28595 * 21 20 19 23 23 C 1.53000 * 109.50114 * 182.40261 * 21 20 19 24 24 C 1.52994 * 117.50093 * 248.42405 * 23 21 20 25 25 C 1.52994 * 60.00267 * 252.51542 * 24 23 21 26 26 C 1.46844 * 110.99670 * 176.53464 * 17 2 1 27 27 H 1.09004 * 109.47076 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47153 * 299.99973 * 1 2 3 29 29 H 1.09002 * 109.47208 * 60.00267 * 1 2 3 30 30 H 1.08998 * 109.46942 * 89.99742 * 7 6 4 31 31 H 1.09002 * 109.47134 * 209.99983 * 7 6 4 32 32 H 1.08999 * 109.46928 * 329.99631 * 7 6 4 33 33 H 1.08997 * 109.47433 * 210.00078 * 8 6 4 34 34 H 1.09005 * 109.46948 * 330.00905 * 8 6 4 35 35 H 0.96998 * 119.99761 * 179.97438 * 12 11 9 36 36 H 1.08997 * 109.46342 * 305.85801 * 18 17 2 37 37 H 1.09000 * 109.46124 * 65.82387 * 18 17 2 38 38 H 1.09002 * 109.49716 * 180.87969 * 19 18 17 39 39 H 1.08989 * 109.53798 * 60.78538 * 19 18 17 40 40 H 1.09004 * 109.52254 * 297.75121 * 20 19 18 41 41 H 1.08996 * 109.57633 * 177.59600 * 20 19 18 42 42 H 1.09004 * 115.54748 * 34.13865 * 23 21 20 43 43 H 1.08998 * 117.49886 * 0.02562 * 24 23 21 44 44 H 1.09007 * 117.49734 * 145.02137 * 24 23 21 45 45 H 1.09009 * 117.49458 * 252.51366 * 25 24 23 46 46 H 1.08994 * 117.50315 * 107.49180 * 25 24 23 47 47 H 1.09002 * 109.46236 * 294.17276 * 26 17 2 48 48 H 1.08999 * 109.46503 * 54.14465 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.3268 -1.8856 1.1746 6 7 2.1544 -0.0398 2.3932 7 6 1.7983 1.3797 2.4610 8 6 2.6421 -0.7305 3.5895 9 6 4.1433 -0.6175 3.6579 10 1 4.6803 -0.0841 2.8874 11 6 4.8313 -1.1950 4.7039 12 7 4.1774 -1.8448 5.6419 13 14 6.6919 -1.0542 4.7890 14 1 7.0618 0.1680 5.5468 15 1 7.2479 -2.2486 5.4742 16 1 7.2455 -0.9703 3.4135 17 7 2.0197 -0.6925 -1.1994 18 6 1.4051 -0.1405 -2.4135 19 6 1.8245 -0.9769 -3.6245 20 6 3.3506 -0.9575 -3.7484 21 6 3.9667 -1.4920 -2.4525 22 1 3.6590 -2.5269 -2.3030 23 6 5.4922 -1.4201 -2.5447 24 6 6.2585 -2.7422 -2.6198 25 6 6.2966 -1.9078 -1.3380 26 6 3.4853 -0.6406 -1.2754 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.7454 1.4780 2.7254 31 1 2.4102 1.8722 3.2167 32 1 1.9743 1.8452 1.4912 33 1 2.2027 -0.2747 4.4768 34 1 2.3587 -1.7820 3.5429 35 1 4.6614 -2.2514 6.3776 36 1 0.3200 -0.1640 -2.3141 37 1 1.7348 0.8892 -2.5516 38 1 1.3807 -0.5577 -4.5275 39 1 1.4830 -2.0037 -3.4943 40 1 3.6893 0.0645 -3.9183 41 1 3.6572 -1.5865 -4.5841 42 1 5.8899 -0.5748 -3.1064 43 1 5.6759 -3.6632 -2.6040 44 1 7.1606 -2.7670 -3.2312 45 1 7.2238 -1.3835 -1.1061 46 1 5.7390 -2.2798 -0.4785 47 1 3.8052 0.3915 -1.4188 48 1 3.9109 -1.0274 -0.3495 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344127951.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:22 Heat of formation + Delta-G solvation = -9.287554 kcal Electronic energy + Delta-G solvation = -25416.336588 eV Core-core repulsion = 22085.873594 eV Total energy + Delta-G solvation = -3330.462994 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.96607 -38.47977 -36.71017 -34.70750 -33.82711 -32.51727 -30.67556 -29.80412 -27.73777 -25.88553 -24.94325 -23.70817 -23.25171 -22.07381 -21.59226 -20.08273 -19.62080 -18.20869 -16.64898 -16.47635 -16.21282 -15.42032 -14.95378 -14.90593 -14.37358 -14.24968 -14.14543 -13.87087 -13.37272 -13.13353 -13.07150 -12.68837 -12.43420 -12.21815 -12.02996 -11.80920 -11.62282 -11.52387 -11.41160 -11.32543 -11.16844 -10.99339 -10.87026 -10.77748 -10.56315 -10.49309 -10.32776 -10.13289 -9.90111 -9.68819 -9.58854 -8.73959 -8.41725 -8.01050 -7.57644 -6.02273 -4.06816 3.30491 3.37195 3.40054 3.48186 3.73568 3.93434 4.22364 4.46487 4.67965 4.86579 4.92227 5.05251 5.07198 5.14618 5.21484 5.22638 5.31453 5.33899 5.43537 5.51139 5.56003 5.61816 5.66365 5.75578 5.77001 5.79290 5.84412 5.89493 5.96232 5.99152 6.06213 6.06484 6.14597 6.17742 6.25193 6.30941 6.36325 6.45047 6.60104 7.03127 7.24397 7.31663 7.48498 7.59645 7.94715 8.26228 8.48592 8.93592 9.19895 9.58380 11.05770 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.012922 B = 0.005726 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.337876 B = 4889.103118 C = 6609.383533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.063 3.937 3 H 0.056 0.944 4 C 0.510 3.490 5 O -0.520 6.520 6 N -0.605 5.605 7 C 0.082 3.918 8 C 0.247 3.753 9 C -0.523 4.523 10 H 0.056 0.944 11 C 0.062 3.938 12 N -0.895 5.895 13 Si 0.895 3.105 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.515 5.515 18 C 0.051 3.949 19 C -0.115 4.115 20 C -0.111 4.111 21 C -0.050 4.050 22 H 0.081 0.919 23 C -0.149 4.149 24 C -0.179 4.179 25 C -0.177 4.177 26 C 0.063 3.937 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.079 0.921 37 H 0.028 0.972 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.025 0.975 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.243 6.105 -17.377 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.049 4.049 3 H 0.073 0.927 4 C 0.295 3.705 5 O -0.396 6.396 6 N -0.338 5.338 7 C -0.062 4.062 8 C 0.127 3.873 9 C -0.562 4.562 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.534 5.534 13 Si 0.723 3.277 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.198 1.198 17 N -0.240 5.240 18 C -0.076 4.076 19 C -0.153 4.153 20 C -0.149 4.149 21 C -0.068 4.068 22 H 0.099 0.901 23 C -0.168 4.168 24 C -0.216 4.216 25 C -0.214 4.214 26 C -0.064 4.064 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.121 0.879 47 H 0.043 0.957 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.201 4.873 -17.165 18.331 hybrid contribution 1.401 1.110 0.197 1.798 sum -2.800 5.982 -16.968 18.209 Atomic orbital electron populations 1.21812 0.92633 1.03426 1.01974 1.21674 0.96796 0.95858 0.90545 0.92683 1.20040 0.79045 0.87543 0.83869 1.90666 1.48956 1.15810 1.84121 1.48174 1.64174 1.09882 1.11568 1.21680 0.99536 0.83199 1.01790 1.19261 0.94121 0.93625 0.80249 1.21414 0.91939 1.34617 1.08271 0.92607 1.24921 0.98572 0.95006 0.95534 1.69932 1.35732 1.35502 1.12215 0.86537 0.85445 0.77510 0.78192 1.20699 1.21081 1.19845 1.61582 1.06729 1.55245 1.00432 1.22197 0.99755 0.95767 0.89922 1.21566 0.95851 1.01245 0.96629 1.21601 0.95216 1.00711 0.97370 1.20711 0.91354 1.00762 0.94021 0.90078 1.22271 0.93632 0.97904 1.02980 1.22965 1.02142 0.95002 1.01484 1.23002 1.02002 1.03728 0.92708 1.22137 0.86651 0.97567 1.00055 0.91096 0.91677 0.91807 0.93781 0.90852 0.92639 0.95144 0.93858 0.92753 0.90273 0.95382 0.91771 0.90982 0.92515 0.91921 0.88318 0.88837 0.89322 0.89083 0.87862 0.95652 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.67 37.16 0.32 -1.51 16 2 C 0.06 1.00 1.79 -68.86 -0.12 0.88 16 3 H 0.06 0.82 6.08 -51.93 -0.32 0.50 16 4 C 0.51 10.83 5.88 -10.99 -0.06 10.77 16 5 O -0.52 -13.37 15.24 5.56 0.08 -13.29 16 6 N -0.60 -13.01 2.86 -182.95 -0.52 -13.54 16 7 C 0.08 1.33 9.88 59.85 0.59 1.92 16 8 C 0.25 6.52 5.16 -5.19 -0.03 6.50 16 9 C -0.52 -14.91 9.39 -34.44 -0.32 -15.23 16 10 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 13 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 17 N -0.51 -8.01 4.21 -228.08 -0.96 -8.97 16 18 C 0.05 0.61 5.05 -3.84 -0.02 0.59 16 19 C -0.12 -1.22 6.09 -26.65 -0.16 -1.38 16 20 C -0.11 -1.23 5.27 -26.61 -0.14 -1.37 16 21 C -0.05 -0.68 2.50 -90.54 -0.23 -0.91 16 22 H 0.08 1.25 7.90 -51.93 -0.41 0.84 16 23 C -0.15 -1.92 5.15 -90.62 -0.47 -2.39 16 24 C -0.18 -2.21 10.18 -26.74 -0.27 -2.48 16 25 C -0.18 -2.59 9.75 -26.73 -0.26 -2.85 16 26 C 0.06 1.02 4.29 -3.83 -0.02 1.01 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.79 7.60 -51.93 -0.39 0.40 16 29 H 0.06 0.66 6.19 -51.93 -0.32 0.33 16 30 H 0.04 0.61 7.98 -51.93 -0.41 0.19 16 31 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 32 H 0.06 0.76 5.86 -51.93 -0.30 0.45 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.08 0.85 5.85 -51.93 -0.30 0.54 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.83 8.14 -51.94 -0.42 0.41 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.10 1.16 8.11 -51.93 -0.42 0.73 16 43 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 44 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 45 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 46 H 0.10 1.79 7.62 -51.93 -0.40 1.40 16 47 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 1.81 5.62 -51.93 -0.29 1.52 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -32.48 370.77 -9.95 -42.43 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.56 Total: 1.63 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -1.29 Total: -4.78 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.75 Total: -48.54 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.48 -9.95 -42.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344127951.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.143 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds