Wall clock time and date at job start Fri Apr 10 2020 20:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47076 * 2 1 4 4 C 1.50699 * 109.46815 * 119.99782 * 2 1 3 5 5 O 1.21282 * 120.00225 * 95.35413 * 4 2 1 6 6 N 1.34772 * 120.00346 * 275.34489 * 4 2 1 7 7 C 1.46508 * 120.00012 * 0.02562 * 6 4 2 8 8 C 1.46503 * 120.00496 * 179.97438 * 6 4 2 9 9 C 1.50701 * 109.46909 * 89.99990 * 8 6 4 10 10 H 1.08005 * 119.99973 * 0.02562 * 9 8 6 11 11 C 1.37879 * 120.00116 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99829 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00041 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47242 * 90.00423 * 13 11 9 15 15 H 1.48502 * 109.47329 * 210.00120 * 13 11 9 16 16 H 1.48504 * 109.47370 * 330.00213 * 13 11 9 17 17 N 1.46901 * 109.47331 * 240.00085 * 2 1 3 18 18 C 1.46846 * 110.99996 * 52.32146 * 17 2 1 19 19 C 1.53035 * 109.52061 * 185.83987 * 18 17 2 20 20 C 1.53119 * 109.28045 * 300.82055 * 19 18 17 21 21 C 1.53121 * 109.15788 * 57.65557 * 20 19 18 22 22 H 1.09001 * 109.50358 * 62.28595 * 21 20 19 23 23 C 1.53000 * 109.50114 * 182.40261 * 21 20 19 24 24 C 1.52994 * 117.50093 * 248.42405 * 23 21 20 25 25 C 1.52994 * 60.00267 * 252.51542 * 24 23 21 26 26 C 1.46844 * 110.99670 * 176.53464 * 17 2 1 27 27 H 1.09004 * 109.47076 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47153 * 299.99973 * 1 2 3 29 29 H 1.09002 * 109.47208 * 60.00267 * 1 2 3 30 30 H 1.08998 * 109.46942 * 89.99742 * 7 6 4 31 31 H 1.09002 * 109.47134 * 209.99983 * 7 6 4 32 32 H 1.08999 * 109.46928 * 329.99631 * 7 6 4 33 33 H 1.08997 * 109.47433 * 210.00078 * 8 6 4 34 34 H 1.09005 * 109.46948 * 330.00905 * 8 6 4 35 35 H 0.96998 * 119.99761 * 179.97438 * 12 11 9 36 36 H 1.08997 * 109.46342 * 305.85801 * 18 17 2 37 37 H 1.09000 * 109.46124 * 65.82387 * 18 17 2 38 38 H 1.09002 * 109.49716 * 180.87969 * 19 18 17 39 39 H 1.08989 * 109.53798 * 60.78538 * 19 18 17 40 40 H 1.09004 * 109.52254 * 297.75121 * 20 19 18 41 41 H 1.08996 * 109.57633 * 177.59600 * 20 19 18 42 42 H 1.09004 * 115.54748 * 34.13865 * 23 21 20 43 43 H 1.08998 * 117.49886 * 0.02562 * 24 23 21 44 44 H 1.09007 * 117.49734 * 145.02137 * 24 23 21 45 45 H 1.09009 * 117.49458 * 252.51366 * 25 24 23 46 46 H 1.08994 * 117.50315 * 107.49180 * 25 24 23 47 47 H 1.09002 * 109.46236 * 294.17276 * 26 17 2 48 48 H 1.08999 * 109.46503 * 54.14465 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.3268 -1.8856 1.1746 6 7 2.1544 -0.0398 2.3932 7 6 1.7983 1.3797 2.4610 8 6 2.6421 -0.7305 3.5895 9 6 4.1433 -0.6175 3.6579 10 1 4.6803 -0.0841 2.8874 11 6 4.8313 -1.1950 4.7039 12 7 4.1774 -1.8448 5.6419 13 14 6.6919 -1.0542 4.7890 14 1 7.0618 0.1680 5.5468 15 1 7.2479 -2.2486 5.4742 16 1 7.2455 -0.9703 3.4135 17 7 2.0197 -0.6925 -1.1994 18 6 1.4051 -0.1405 -2.4135 19 6 1.8245 -0.9769 -3.6245 20 6 3.3506 -0.9575 -3.7484 21 6 3.9667 -1.4920 -2.4525 22 1 3.6590 -2.5269 -2.3030 23 6 5.4922 -1.4201 -2.5447 24 6 6.2585 -2.7422 -2.6198 25 6 6.2966 -1.9078 -1.3380 26 6 3.4853 -0.6406 -1.2754 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.7454 1.4780 2.7254 31 1 2.4102 1.8722 3.2167 32 1 1.9743 1.8452 1.4912 33 1 2.2027 -0.2747 4.4768 34 1 2.3587 -1.7820 3.5429 35 1 4.6614 -2.2514 6.3776 36 1 0.3200 -0.1640 -2.3141 37 1 1.7348 0.8892 -2.5516 38 1 1.3807 -0.5577 -4.5275 39 1 1.4830 -2.0037 -3.4943 40 1 3.6893 0.0645 -3.9183 41 1 3.6572 -1.5865 -4.5841 42 1 5.8899 -0.5748 -3.1064 43 1 5.6759 -3.6632 -2.6040 44 1 7.1606 -2.7670 -3.2312 45 1 7.2238 -1.3835 -1.1061 46 1 5.7390 -2.2798 -0.4785 47 1 3.8052 0.3915 -1.4188 48 1 3.9109 -1.0274 -0.3495 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344127951.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:22 Heat of formation + Delta-G solvation = -29.932285 kcal Electronic energy + Delta-G solvation = -25417.231811 eV Core-core repulsion = 22085.873594 eV Total energy + Delta-G solvation = -3331.358217 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.32236 -39.85106 -37.88178 -36.53513 -35.11007 -34.51520 -31.74019 -31.04191 -29.60483 -27.40720 -26.30061 -25.10225 -24.62638 -23.24981 -22.93906 -21.17684 -20.67641 -19.78013 -18.71857 -18.07067 -17.58305 -16.88855 -16.42835 -16.27703 -15.93204 -15.52011 -15.38244 -15.08818 -14.76317 -14.39693 -14.31204 -14.03154 -13.88000 -13.59060 -13.48713 -13.22581 -13.15038 -12.91829 -12.81645 -12.65866 -12.59733 -12.46848 -12.41343 -12.23408 -12.00359 -11.75747 -11.70535 -11.56654 -11.34612 -10.94366 -10.78267 -10.66542 -10.40317 -9.41036 -9.18079 -8.24664 -6.39348 1.31983 1.35467 1.45540 1.85213 2.25652 2.38508 2.75120 3.01168 3.04539 3.64041 3.65971 3.87847 3.92000 3.98874 4.05448 4.12113 4.15733 4.21782 4.38108 4.43798 4.52594 4.53003 4.60683 4.66840 4.72395 4.73899 4.77802 4.83729 4.88031 4.92140 4.99015 5.00225 5.03999 5.06374 5.16054 5.20885 5.21118 5.22090 5.33096 5.40454 5.54122 5.55419 5.82691 6.02131 6.04840 6.24382 6.68405 6.81271 7.27025 7.54071 8.82377 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.012922 B = 0.005726 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.337876 B = 4889.103118 C = 6609.383533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.074 3.926 3 H 0.076 0.924 4 C 0.501 3.499 5 O -0.580 6.580 6 N -0.613 5.613 7 C 0.077 3.923 8 C 0.262 3.738 9 C -0.539 4.539 10 H 0.048 0.952 11 C 0.009 3.991 12 N -0.928 5.928 13 Si 0.964 3.036 14 H -0.261 1.261 15 H -0.280 1.280 16 H -0.275 1.275 17 N -0.537 5.537 18 C 0.049 3.951 19 C -0.113 4.113 20 C -0.104 4.104 21 C -0.048 4.048 22 H 0.052 0.948 23 C -0.139 4.139 24 C -0.161 4.161 25 C -0.205 4.205 26 C 0.071 3.929 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.024 0.976 34 H -0.006 1.006 35 H 0.267 0.733 36 H 0.095 0.905 37 H 0.045 0.955 38 H 0.096 0.904 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.116 0.884 45 H 0.098 0.902 46 H 0.059 0.941 47 H 0.034 0.966 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.271 8.679 -20.338 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.037 4.037 3 H 0.094 0.906 4 C 0.289 3.711 5 O -0.459 6.459 6 N -0.345 5.345 7 C -0.065 4.065 8 C 0.141 3.859 9 C -0.578 4.578 10 H 0.067 0.933 11 C -0.190 4.190 12 N -0.567 5.567 13 Si 0.788 3.212 14 H -0.185 1.185 15 H -0.205 1.205 16 H -0.200 1.200 17 N -0.262 5.262 18 C -0.077 4.077 19 C -0.151 4.151 20 C -0.142 4.142 21 C -0.066 4.066 22 H 0.071 0.929 23 C -0.158 4.158 24 C -0.198 4.198 25 C -0.242 4.242 26 C -0.057 4.057 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.042 0.958 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.115 0.885 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.141 0.859 43 H 0.106 0.894 44 H 0.134 0.866 45 H 0.116 0.884 46 H 0.077 0.923 47 H 0.052 0.948 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.259 7.500 -20.139 21.908 hybrid contribution 1.359 0.268 1.150 1.800 sum -2.900 7.767 -18.990 20.721 Atomic orbital electron populations 1.21835 0.89953 1.02965 1.04435 1.21628 0.98600 0.95567 0.87928 0.90637 1.21153 0.77704 0.87147 0.85143 1.90627 1.51433 1.18725 1.85150 1.48205 1.63910 1.12055 1.10333 1.21972 1.01155 0.79793 1.03556 1.18708 0.93452 0.91490 0.82297 1.21637 0.93057 1.34848 1.08208 0.93345 1.25824 1.03712 0.94383 0.95044 1.70049 1.37778 1.36114 1.12806 0.85475 0.79199 0.78334 0.78211 1.18541 1.20509 1.19954 1.61542 1.06363 1.56538 1.01804 1.22368 1.00413 0.96607 0.88333 1.21596 0.95596 1.00515 0.97375 1.21573 0.95380 1.01572 0.95628 1.20680 0.92134 0.98875 0.94959 0.92921 1.22386 0.93067 0.99013 1.01321 1.23039 1.02828 0.94468 0.99477 1.22872 1.02556 1.06256 0.92524 1.21954 0.87325 0.97923 0.98513 0.93047 0.90574 0.87945 0.90766 0.91536 0.89455 0.95842 0.98745 0.92387 0.88670 0.93709 0.88514 0.92448 0.91032 0.90406 0.85932 0.89425 0.86590 0.88353 0.92253 0.94822 0.94673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.67 71.98 0.62 -2.54 16 2 C 0.07 2.29 1.79 44.17 0.08 2.37 16 3 H 0.08 2.02 6.08 -2.39 -0.01 2.01 16 4 C 0.50 22.16 5.88 87.66 0.52 22.68 16 5 O -0.58 -32.26 15.24 -3.04 -0.05 -32.30 16 6 N -0.61 -27.26 2.86 -851.11 -2.43 -29.69 16 7 C 0.08 2.41 9.88 127.77 1.26 3.67 16 8 C 0.26 14.72 5.16 85.63 0.44 15.16 16 9 C -0.54 -32.15 9.39 25.60 0.24 -31.91 16 10 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 11 C 0.01 0.55 5.46 84.66 0.46 1.02 16 12 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 13 Si 0.96 46.19 29.54 68.60 2.03 48.22 16 14 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 16 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 17 N -0.54 -16.34 4.21 -875.52 -3.68 -20.03 16 18 C 0.05 1.01 5.05 86.33 0.44 1.44 16 19 C -0.11 -2.03 6.09 30.65 0.19 -1.84 16 20 C -0.10 -1.98 5.27 30.67 0.16 -1.82 16 21 C -0.05 -1.29 2.50 -10.74 -0.03 -1.32 16 22 H 0.05 1.71 7.90 -2.39 -0.02 1.69 16 23 C -0.14 -3.49 5.15 -10.80 -0.06 -3.55 16 24 C -0.16 -3.89 10.18 30.59 0.31 -3.58 16 25 C -0.20 -6.28 9.75 30.59 0.30 -5.99 16 26 C 0.07 2.32 4.29 86.33 0.37 2.69 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.63 7.60 -2.39 -0.02 1.61 16 29 H 0.10 1.64 6.19 -2.39 -0.01 1.63 16 30 H 0.07 1.88 7.98 -2.39 -0.02 1.86 16 31 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 32 H 0.09 2.15 5.86 -2.39 -0.01 2.13 16 33 H 0.02 1.33 8.07 -2.39 -0.02 1.31 16 34 H -0.01 -0.36 7.42 -2.38 -0.02 -0.38 16 35 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.10 1.64 5.85 -2.39 -0.01 1.62 16 37 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.12 2.52 8.11 -2.38 -0.02 2.50 16 43 H 0.09 2.20 8.05 -2.39 -0.02 2.18 16 44 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 45 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 46 H 0.06 2.33 7.62 -2.39 -0.02 2.31 16 47 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.03 1.53 5.62 -2.39 -0.01 1.52 16 Total: -1.00 -78.01 370.77 2.37 -75.64 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.91 Total: 18.91 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 5.31 Total: -3.51 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -5.83 Total: -106.96 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.05 Total: -32.30 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -78.01 2.37 -75.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344127951.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.709 kcal (2) G-P(sol) polarization free energy of solvation -78.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds