Wall clock time and date at job start Fri Apr 10 2020 20:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47122 * 2 1 4 4 C 1.50699 * 109.46978 * 120.00140 * 2 1 3 5 5 O 1.21281 * 120.00109 * 95.26578 * 4 2 1 6 6 N 1.34774 * 119.99765 * 275.25968 * 4 2 1 7 7 C 1.46497 * 120.00432 * 4.40331 * 6 4 2 8 8 C 1.46507 * 119.99814 * 184.39688 * 6 4 2 9 9 C 1.50694 * 109.47505 * 270.00118 * 8 6 4 10 10 H 1.08003 * 119.99819 * 0.02562 * 9 8 6 11 11 C 1.37875 * 120.00355 * 179.97438 * 9 8 6 12 12 N 1.31514 * 119.99752 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00172 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47293 * 180.02562 * 13 11 9 15 15 H 1.48497 * 109.47446 * 300.01093 * 13 11 9 16 16 H 1.48506 * 109.46791 * 60.00901 * 13 11 9 17 17 N 1.46897 * 109.46904 * 239.99885 * 2 1 3 18 18 C 1.46855 * 111.00045 * 177.42775 * 17 2 1 19 19 C 1.53036 * 109.52239 * 174.16154 * 18 17 2 20 20 C 1.53112 * 109.27748 * 59.18219 * 19 18 17 21 21 C 1.53121 * 109.16359 * 302.34045 * 20 19 18 22 22 H 1.09005 * 109.53322 * 297.69792 * 21 20 19 23 23 C 1.52994 * 109.50471 * 177.59930 * 21 20 19 24 24 C 1.52994 * 117.50019 * 128.94681 * 23 21 20 25 25 C 1.53002 * 117.50066 * 60.28550 * 23 21 20 26 26 C 1.46851 * 111.00011 * 53.21963 * 17 2 1 27 27 H 1.08997 * 109.47365 * 52.17233 * 1 2 3 28 28 H 1.09002 * 109.47570 * 172.16972 * 1 2 3 29 29 H 1.08998 * 109.47187 * 292.17187 * 1 2 3 30 30 H 1.09006 * 109.47246 * 274.27518 * 7 6 4 31 31 H 1.09001 * 109.46991 * 34.27125 * 7 6 4 32 32 H 1.08996 * 109.47676 * 154.27371 * 7 6 4 33 33 H 1.09000 * 109.46991 * 150.00196 * 8 6 4 34 34 H 1.09004 * 109.47158 * 30.00472 * 8 6 4 35 35 H 0.97002 * 120.00237 * 179.97438 * 12 11 9 36 36 H 1.08996 * 109.46132 * 294.17937 * 18 17 2 37 37 H 1.08996 * 109.45845 * 54.14727 * 18 17 2 38 38 H 1.08998 * 109.50175 * 299.23556 * 19 18 17 39 39 H 1.08999 * 109.53044 * 179.14436 * 19 18 17 40 40 H 1.09008 * 109.52125 * 182.43825 * 20 19 18 41 41 H 1.09003 * 109.52659 * 62.25076 * 20 19 18 42 42 H 1.09007 * 115.54821 * 274.61423 * 23 21 20 43 43 H 1.09004 * 117.49902 * 359.97438 * 24 23 21 44 44 H 1.09006 * 117.50264 * 145.01641 * 24 23 21 45 45 H 1.09008 * 117.49483 * 214.97778 * 25 23 21 46 46 H 1.08988 * 117.49820 * 359.97225 * 25 23 21 47 47 H 1.08993 * 109.46327 * 305.85455 * 26 17 2 48 48 H 1.09000 * 109.46178 * 65.83142 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2304 5 8 2.3253 -1.8860 1.1748 6 7 2.1560 -0.0394 2.3927 7 6 1.7120 1.3536 2.4851 8 6 2.7344 -0.7031 3.5637 9 6 1.6389 -1.3688 4.3560 10 1 0.6144 -1.3044 4.0206 11 6 1.9448 -2.0610 5.5085 12 7 3.1925 -2.1399 5.9167 13 14 0.5868 -2.8857 6.4909 14 1 1.1731 -3.5585 7.6778 15 1 -0.3933 -1.8628 6.9361 16 1 -0.0991 -3.8911 5.6400 17 7 2.0196 -0.6925 -1.1994 18 6 3.4863 -0.6591 -1.2646 19 6 3.9654 -1.5104 -2.4426 20 6 3.3657 -0.9614 -3.7400 21 6 1.8386 -0.9619 -3.6275 22 1 1.4825 -1.9848 -3.5046 23 6 1.2327 -0.3590 -4.8964 24 6 0.1379 -1.1588 -5.6054 25 6 1.5344 -1.0572 -6.2240 26 6 1.4210 -0.1265 -2.4151 27 1 -0.3634 0.6302 -0.8117 28 1 -0.3634 -1.0181 -0.1400 29 1 -0.3633 0.3878 0.9517 30 1 2.5135 2.0133 2.1527 31 1 0.8363 1.4986 1.8525 32 1 1.4558 1.5856 3.5189 33 1 3.2372 0.0353 4.1884 34 1 3.4543 -1.4536 3.2373 35 1 3.4076 -2.6266 6.7277 36 1 3.8204 0.3695 -1.4002 37 1 3.9000 -1.0560 -0.3376 38 1 3.6434 -2.5420 -2.3007 39 1 5.0532 -1.4734 -2.5002 40 1 3.6695 -1.5907 -4.5766 41 1 3.7186 0.0571 -3.9021 42 1 1.1489 0.7278 -4.9069 43 1 -0.1504 -2.1147 -5.1680 44 1 -0.6659 -0.5982 -6.0827 45 1 1.6488 -0.4297 -7.1080 46 1 2.1649 -1.9457 -6.1934 47 1 0.3350 -0.1365 -2.3238 48 1 1.7650 0.8996 -2.5454 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344127954.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:26 Heat of formation + Delta-G solvation = -11.015758 kcal Electronic energy + Delta-G solvation = -24855.447268 eV Core-core repulsion = 21524.909334 eV Total energy + Delta-G solvation = -3330.537935 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.01047 -38.64960 -36.81414 -34.69932 -33.89910 -32.50348 -30.72103 -29.88661 -27.69259 -25.95325 -24.84957 -24.06281 -23.07504 -22.45957 -21.36854 -20.49848 -19.70603 -18.24645 -16.58731 -16.48880 -16.36618 -15.35848 -15.12521 -14.84052 -14.70701 -14.20432 -14.12275 -13.68873 -13.53463 -13.41245 -13.04536 -12.97837 -12.39592 -12.15029 -12.06079 -11.86647 -11.76299 -11.63289 -11.49129 -11.33498 -11.12136 -11.08731 -10.87105 -10.83222 -10.61137 -10.54220 -10.50936 -10.20290 -10.11545 -9.84964 -9.59457 -8.74142 -8.39943 -8.06700 -7.57690 -6.00755 -4.05152 3.34333 3.38652 3.41152 3.46081 3.57877 3.71915 4.20523 4.48139 4.51605 4.67687 4.71266 4.85574 4.99993 5.06480 5.09316 5.28587 5.31211 5.34020 5.35661 5.40053 5.43144 5.50242 5.55047 5.65272 5.67577 5.70847 5.75497 5.81426 5.88585 5.92321 5.92827 5.94843 6.00806 6.06207 6.18644 6.20968 6.29489 6.38851 6.46566 7.01691 7.21757 7.26871 7.46882 7.60197 7.96053 8.27528 8.48381 8.94983 9.19412 9.59894 11.07296 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.026298 B = 0.003355 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.483315 B = 8344.653723 C = 8477.508459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 H 0.053 0.947 4 C 0.509 3.491 5 O -0.518 6.518 6 N -0.606 5.606 7 C 0.082 3.918 8 C 0.248 3.752 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.060 3.940 12 N -0.897 5.897 13 Si 0.898 3.102 14 H -0.287 1.287 15 H -0.277 1.277 16 H -0.276 1.276 17 N -0.514 5.514 18 C 0.055 3.945 19 C -0.114 4.114 20 C -0.111 4.111 21 C -0.053 4.053 22 H 0.080 0.920 23 C -0.145 4.145 24 C -0.180 4.180 25 C -0.180 4.180 26 C 0.063 3.937 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.041 0.959 35 H 0.263 0.737 36 H 0.025 0.975 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.000 8.158 -20.866 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.045 4.045 3 H 0.071 0.929 4 C 0.294 3.706 5 O -0.393 6.393 6 N -0.340 5.340 7 C -0.062 4.062 8 C 0.129 3.871 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.536 5.536 13 Si 0.725 3.275 14 H -0.212 1.212 15 H -0.203 1.203 16 H -0.201 1.201 17 N -0.239 5.239 18 C -0.073 4.073 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.072 4.072 22 H 0.099 0.901 23 C -0.164 4.164 24 C -0.217 4.217 25 C -0.217 4.217 26 C -0.065 4.065 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.098 0.902 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.849 6.956 -20.673 21.997 hybrid contribution -0.502 0.556 0.629 0.978 sum -3.351 7.512 -20.043 21.665 Atomic orbital electron populations 1.21838 0.92580 1.03484 1.02100 1.21617 0.96961 0.95573 0.90341 0.92935 1.20072 0.79281 0.87413 0.83841 1.90673 1.48825 1.15186 1.84611 1.48178 1.61486 1.12144 1.12157 1.21679 0.98221 0.83288 1.03059 1.19252 0.94161 0.92836 0.80865 1.21400 0.94014 1.33173 1.07672 0.92535 1.24934 0.95638 0.96134 0.97432 1.69922 1.17325 1.42413 1.23913 0.86565 0.81892 0.79736 0.79266 1.21212 1.20295 1.20141 1.61586 1.06957 1.54962 1.00428 1.22121 0.87230 0.97703 1.00202 1.21548 0.99461 1.00655 0.93551 1.21600 0.94707 1.00897 0.97638 1.20761 0.95119 0.99917 0.91397 0.90122 1.22289 1.02859 0.98360 0.92862 1.23028 0.92103 1.02244 1.04327 1.22920 0.99233 1.03133 0.96375 1.22137 0.99975 0.95313 0.89069 0.92067 0.90850 0.91323 0.94127 0.92509 0.90609 0.95123 0.94077 0.92710 0.95639 0.89755 0.90805 0.91676 0.91981 0.92435 0.88108 0.88661 0.89092 0.89123 0.88779 0.90187 0.95306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.13 37.16 0.30 -1.66 16 2 C 0.07 1.06 1.65 -68.87 -0.11 0.95 16 3 H 0.05 0.75 7.20 -51.93 -0.37 0.38 16 4 C 0.51 10.85 5.85 -10.99 -0.06 10.78 16 5 O -0.52 -13.41 15.22 5.56 0.08 -13.33 16 6 N -0.61 -13.10 2.86 -182.95 -0.52 -13.62 16 7 C 0.08 1.32 9.69 59.85 0.58 1.90 16 8 C 0.25 6.59 5.11 -5.19 -0.03 6.56 16 9 C -0.52 -15.09 9.39 -34.44 -0.32 -15.41 16 10 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 13 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 N -0.51 -7.82 4.22 -228.08 -0.96 -8.79 16 18 C 0.06 0.82 5.17 -3.83 -0.02 0.80 16 19 C -0.11 -1.43 6.09 -26.65 -0.16 -1.60 16 20 C -0.11 -1.15 5.09 -26.61 -0.14 -1.29 16 21 C -0.05 -0.56 2.50 -90.54 -0.23 -0.79 16 22 H 0.08 0.97 7.90 -51.93 -0.41 0.56 16 23 C -0.15 -1.26 5.15 -90.62 -0.47 -1.73 16 24 C -0.18 -1.46 10.18 -26.70 -0.27 -1.73 16 25 C -0.18 -1.41 9.77 -26.69 -0.26 -1.67 16 26 C 0.06 0.74 4.34 -3.83 -0.02 0.73 16 27 H 0.06 0.66 6.68 -51.93 -0.35 0.31 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.07 0.94 6.55 -51.93 -0.34 0.60 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.77 5.28 -51.93 -0.27 0.50 16 32 H 0.08 1.25 8.04 -51.93 -0.42 0.84 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.23 7.49 -51.93 -0.39 0.84 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 1.54 6.37 -51.93 -0.33 1.21 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.58 7.40 -51.92 -0.38 0.20 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.83 8.11 -51.93 -0.42 0.41 16 43 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 46 H 0.09 0.74 7.65 -51.94 -0.40 0.35 16 47 H 0.08 0.90 6.04 -51.93 -0.31 0.59 16 48 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -32.85 370.24 -9.99 -42.85 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -8.59 Total: -1.12 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -1.30 Total: -2.49 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.75 Total: -48.65 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.85 -9.99 -42.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344127954.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.832 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds