Wall clock time and date at job start Fri Apr 10 2020 20:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47122 * 2 1 4 4 C 1.50699 * 109.46978 * 120.00140 * 2 1 3 5 5 O 1.21281 * 120.00109 * 95.26578 * 4 2 1 6 6 N 1.34774 * 119.99765 * 275.25968 * 4 2 1 7 7 C 1.46497 * 120.00432 * 4.40331 * 6 4 2 8 8 C 1.46507 * 119.99814 * 184.39688 * 6 4 2 9 9 C 1.50694 * 109.47505 * 270.00118 * 8 6 4 10 10 H 1.08003 * 119.99819 * 0.02562 * 9 8 6 11 11 C 1.37875 * 120.00355 * 179.97438 * 9 8 6 12 12 N 1.31514 * 119.99752 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00172 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47293 * 180.02562 * 13 11 9 15 15 H 1.48497 * 109.47446 * 300.01093 * 13 11 9 16 16 H 1.48506 * 109.46791 * 60.00901 * 13 11 9 17 17 N 1.46897 * 109.46904 * 239.99885 * 2 1 3 18 18 C 1.46855 * 111.00045 * 177.42775 * 17 2 1 19 19 C 1.53036 * 109.52239 * 174.16154 * 18 17 2 20 20 C 1.53112 * 109.27748 * 59.18219 * 19 18 17 21 21 C 1.53121 * 109.16359 * 302.34045 * 20 19 18 22 22 H 1.09005 * 109.53322 * 297.69792 * 21 20 19 23 23 C 1.52994 * 109.50471 * 177.59930 * 21 20 19 24 24 C 1.52994 * 117.50019 * 128.94681 * 23 21 20 25 25 C 1.53002 * 117.50066 * 60.28550 * 23 21 20 26 26 C 1.46851 * 111.00011 * 53.21963 * 17 2 1 27 27 H 1.08997 * 109.47365 * 52.17233 * 1 2 3 28 28 H 1.09002 * 109.47570 * 172.16972 * 1 2 3 29 29 H 1.08998 * 109.47187 * 292.17187 * 1 2 3 30 30 H 1.09006 * 109.47246 * 274.27518 * 7 6 4 31 31 H 1.09001 * 109.46991 * 34.27125 * 7 6 4 32 32 H 1.08996 * 109.47676 * 154.27371 * 7 6 4 33 33 H 1.09000 * 109.46991 * 150.00196 * 8 6 4 34 34 H 1.09004 * 109.47158 * 30.00472 * 8 6 4 35 35 H 0.97002 * 120.00237 * 179.97438 * 12 11 9 36 36 H 1.08996 * 109.46132 * 294.17937 * 18 17 2 37 37 H 1.08996 * 109.45845 * 54.14727 * 18 17 2 38 38 H 1.08998 * 109.50175 * 299.23556 * 19 18 17 39 39 H 1.08999 * 109.53044 * 179.14436 * 19 18 17 40 40 H 1.09008 * 109.52125 * 182.43825 * 20 19 18 41 41 H 1.09003 * 109.52659 * 62.25076 * 20 19 18 42 42 H 1.09007 * 115.54821 * 274.61423 * 23 21 20 43 43 H 1.09004 * 117.49902 * 359.97438 * 24 23 21 44 44 H 1.09006 * 117.50264 * 145.01641 * 24 23 21 45 45 H 1.09008 * 117.49483 * 214.97778 * 25 23 21 46 46 H 1.08988 * 117.49820 * 359.97225 * 25 23 21 47 47 H 1.08993 * 109.46327 * 305.85455 * 26 17 2 48 48 H 1.09000 * 109.46178 * 65.83142 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2304 5 8 2.3253 -1.8860 1.1748 6 7 2.1560 -0.0394 2.3927 7 6 1.7120 1.3536 2.4851 8 6 2.7344 -0.7031 3.5637 9 6 1.6389 -1.3688 4.3560 10 1 0.6144 -1.3044 4.0206 11 6 1.9448 -2.0610 5.5085 12 7 3.1925 -2.1399 5.9167 13 14 0.5868 -2.8857 6.4909 14 1 1.1731 -3.5585 7.6778 15 1 -0.3933 -1.8628 6.9361 16 1 -0.0991 -3.8911 5.6400 17 7 2.0196 -0.6925 -1.1994 18 6 3.4863 -0.6591 -1.2646 19 6 3.9654 -1.5104 -2.4426 20 6 3.3657 -0.9614 -3.7400 21 6 1.8386 -0.9619 -3.6275 22 1 1.4825 -1.9848 -3.5046 23 6 1.2327 -0.3590 -4.8964 24 6 0.1379 -1.1588 -5.6054 25 6 1.5344 -1.0572 -6.2240 26 6 1.4210 -0.1265 -2.4151 27 1 -0.3634 0.6302 -0.8117 28 1 -0.3634 -1.0181 -0.1400 29 1 -0.3633 0.3878 0.9517 30 1 2.5135 2.0133 2.1527 31 1 0.8363 1.4986 1.8525 32 1 1.4558 1.5856 3.5189 33 1 3.2372 0.0353 4.1884 34 1 3.4543 -1.4536 3.2373 35 1 3.4076 -2.6266 6.7277 36 1 3.8204 0.3695 -1.4002 37 1 3.9000 -1.0560 -0.3376 38 1 3.6434 -2.5420 -2.3007 39 1 5.0532 -1.4734 -2.5002 40 1 3.6695 -1.5907 -4.5766 41 1 3.7186 0.0571 -3.9021 42 1 1.1489 0.7278 -4.9069 43 1 -0.1504 -2.1147 -5.1680 44 1 -0.6659 -0.5982 -6.0827 45 1 1.6488 -0.4297 -7.1080 46 1 2.1649 -1.9457 -6.1934 47 1 0.3350 -0.1365 -2.3238 48 1 1.7650 0.8996 -2.5454 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344127954.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:25 Heat of formation + Delta-G solvation = -31.606565 kcal Electronic energy + Delta-G solvation = -24856.340153 eV Core-core repulsion = 21524.909334 eV Total energy + Delta-G solvation = -3331.430819 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.31437 -39.87252 -37.77210 -36.51740 -35.14725 -34.50806 -31.66952 -31.13722 -29.57278 -27.45714 -26.19553 -25.24108 -24.54638 -23.22860 -22.55502 -21.44901 -20.61306 -19.78754 -18.67677 -18.03256 -17.58576 -16.84378 -16.42511 -16.14404 -15.81732 -15.71400 -15.36850 -14.83404 -14.62789 -14.55236 -14.34955 -14.11828 -13.99894 -13.64456 -13.48970 -13.27825 -13.12209 -12.88258 -12.67507 -12.59859 -12.58369 -12.40866 -12.34414 -12.18430 -12.05050 -11.74868 -11.72171 -11.44226 -11.41515 -11.00606 -10.65010 -10.60334 -10.40131 -9.40449 -9.20335 -8.22685 -6.37603 1.35296 1.40219 1.47361 1.84737 2.22454 2.41101 2.89115 3.00082 3.06440 3.62130 3.76057 3.86215 3.96881 4.06568 4.10531 4.13028 4.19507 4.26409 4.38103 4.41753 4.46706 4.56269 4.63796 4.65704 4.71047 4.78613 4.79321 4.87061 4.88475 4.91271 4.98191 5.00949 5.06170 5.11425 5.14384 5.20387 5.23489 5.30227 5.34505 5.40197 5.55798 5.57528 5.83528 6.02273 6.06286 6.21549 6.70151 6.81542 7.28650 7.53758 8.84155 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.026298 B = 0.003355 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.483315 B = 8344.653723 C = 8477.508459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.079 3.921 3 H 0.080 0.920 4 C 0.500 3.500 5 O -0.578 6.578 6 N -0.614 5.614 7 C 0.076 3.924 8 C 0.263 3.737 9 C -0.541 4.541 10 H 0.052 0.948 11 C 0.006 3.994 12 N -0.930 5.930 13 Si 0.968 3.032 14 H -0.277 1.277 15 H -0.258 1.258 16 H -0.279 1.279 17 N -0.537 5.537 18 C 0.058 3.942 19 C -0.112 4.112 20 C -0.103 4.103 21 C -0.050 4.050 22 H 0.059 0.941 23 C -0.145 4.145 24 C -0.183 4.183 25 C -0.175 4.175 26 C 0.065 3.935 27 H 0.102 0.898 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.023 0.977 34 H -0.007 1.007 35 H 0.267 0.733 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.114 0.886 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.830 10.318 -22.709 25.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.032 4.032 3 H 0.097 0.903 4 C 0.288 3.712 5 O -0.457 6.457 6 N -0.346 5.346 7 C -0.066 4.066 8 C 0.142 3.858 9 C -0.580 4.580 10 H 0.070 0.930 11 C -0.192 4.192 12 N -0.570 5.570 13 Si 0.792 3.208 14 H -0.202 1.202 15 H -0.183 1.183 16 H -0.205 1.205 17 N -0.263 5.263 18 C -0.070 4.070 19 C -0.149 4.149 20 C -0.140 4.140 21 C -0.069 4.069 22 H 0.078 0.922 23 C -0.164 4.164 24 C -0.220 4.220 25 C -0.212 4.212 26 C -0.062 4.062 27 H 0.120 0.880 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.011 0.989 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.132 0.868 43 H 0.104 0.896 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.698 9.174 -22.535 24.781 hybrid contribution 0.127 -0.133 1.185 1.199 sum -4.571 9.041 -21.350 23.632 Atomic orbital electron populations 1.21852 0.90625 1.03168 1.03828 1.21541 0.98188 0.95709 0.87810 0.90264 1.21170 0.77883 0.87006 0.85132 1.90633 1.51304 1.18125 1.85657 1.48210 1.61209 1.14217 1.10978 1.21978 1.00504 0.80334 1.03778 1.18706 0.93056 0.91758 0.82314 1.21669 0.94157 1.33868 1.08293 0.92957 1.25876 0.98199 0.96597 0.98573 1.70046 1.19386 1.43057 1.24468 0.85471 0.78950 0.78792 0.77625 1.20249 1.18263 1.20465 1.61530 1.07075 1.56198 1.01494 1.22027 0.87423 0.98625 0.98918 1.21523 1.00275 0.98999 0.94146 1.21549 0.94491 1.01641 0.96327 1.20694 0.95258 0.98823 0.92117 0.92214 1.22201 1.03247 0.98884 0.92057 1.23076 0.92637 1.01946 1.04300 1.22987 0.98828 1.03027 0.96381 1.22234 1.00227 0.96138 0.87621 0.87990 0.92951 0.91138 0.91317 0.89179 0.91175 0.95873 0.98922 0.92397 0.93972 0.94333 0.93216 0.90603 0.90822 0.91094 0.86842 0.89582 0.87840 0.87721 0.89153 0.89337 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.13 71.98 0.59 -2.88 16 2 C 0.08 2.41 1.65 44.17 0.07 2.49 16 3 H 0.08 2.01 7.20 -2.39 -0.02 1.99 16 4 C 0.50 21.93 5.85 87.66 0.51 22.44 16 5 O -0.58 -31.90 15.22 -3.03 -0.05 -31.95 16 6 N -0.61 -27.07 2.86 -851.13 -2.43 -29.50 16 7 C 0.08 2.34 9.69 127.77 1.24 3.58 16 8 C 0.26 14.69 5.11 85.63 0.44 15.13 16 9 C -0.54 -32.14 9.39 25.60 0.24 -31.90 16 10 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 11 C 0.01 0.37 5.46 84.65 0.46 0.84 16 12 N -0.93 -57.55 13.29 21.45 0.28 -57.27 16 13 Si 0.97 45.94 29.54 68.60 2.03 47.97 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 15 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 16 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 17 N -0.54 -15.99 4.22 -875.52 -3.69 -19.68 16 18 C 0.06 1.75 5.17 86.32 0.45 2.19 16 19 C -0.11 -2.81 6.09 30.64 0.19 -2.62 16 20 C -0.10 -1.94 5.09 30.67 0.16 -1.78 16 21 C -0.05 -0.96 2.50 -10.74 -0.03 -0.99 16 22 H 0.06 1.41 7.90 -2.38 -0.02 1.39 16 23 C -0.15 -2.10 5.15 -10.80 -0.06 -2.15 16 24 C -0.18 -2.53 10.18 30.62 0.31 -2.22 16 25 C -0.18 -2.28 9.77 30.62 0.30 -1.98 16 26 C 0.06 1.35 4.34 86.33 0.37 1.73 16 27 H 0.10 1.76 6.68 -2.39 -0.02 1.74 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.75 6.55 -2.39 -0.02 1.73 16 30 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.09 2.17 5.28 -2.39 -0.01 2.16 16 32 H 0.07 2.24 8.04 -2.39 -0.02 2.22 16 33 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 34 H -0.01 -0.48 7.49 -2.39 -0.02 -0.49 16 35 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.04 1.50 6.37 -2.39 -0.02 1.49 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 1.24 7.40 -2.38 -0.02 1.22 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.11 1.40 8.11 -2.38 -0.02 1.39 16 43 H 0.09 1.35 8.05 -2.39 -0.02 1.33 16 44 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.09 1.24 7.65 -2.39 -0.02 1.23 16 47 H 0.09 1.70 6.04 -2.39 -0.01 1.69 16 48 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -76.30 370.24 2.30 -74.00 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.91 Total: 14.54 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 5.24 Total: 1.88 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -5.84 Total: -106.45 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -0.05 Total: -31.95 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -76.30 2.30 -74.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344127954.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.398 kcal (2) G-P(sol) polarization free energy of solvation -76.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds