Wall clock time and date at job start Fri Apr 10 2020 20:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47091 * 2 1 4 4 C 1.50696 * 109.47186 * 239.99833 * 2 1 3 5 5 O 1.21285 * 120.00155 * 266.07920 * 4 2 1 6 6 N 1.34773 * 120.00255 * 86.08172 * 4 2 1 7 7 C 1.46504 * 120.00114 * 359.97438 * 6 4 2 8 8 C 1.46499 * 120.00401 * 180.02562 * 6 4 2 9 9 C 1.50701 * 109.47546 * 89.99724 * 8 6 4 10 10 H 1.08000 * 119.99287 * 359.97438 * 9 8 6 11 11 C 1.37875 * 120.00311 * 180.02562 * 9 8 6 12 12 N 1.31506 * 120.00071 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99863 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47333 * 270.00407 * 13 11 9 15 15 H 1.48504 * 109.46874 * 30.01101 * 13 11 9 16 16 H 1.48501 * 109.46908 * 150.00358 * 13 11 9 17 17 N 1.46898 * 109.47026 * 119.99507 * 2 1 3 18 18 C 1.46852 * 110.99854 * 173.98672 * 17 2 1 19 19 C 1.53038 * 109.52209 * 174.16075 * 18 17 2 20 20 C 1.53117 * 109.27759 * 59.18464 * 19 18 17 21 21 C 1.53125 * 109.15670 * 302.34222 * 20 19 18 22 22 H 1.09004 * 109.50369 * 297.71028 * 21 20 19 23 23 C 1.53001 * 109.50098 * 177.63727 * 21 20 19 24 24 C 1.53002 * 117.49918 * 128.74580 * 23 21 20 25 25 C 1.53003 * 117.49919 * 60.08732 * 23 21 20 26 26 C 1.46847 * 110.99820 * 49.78037 * 17 2 1 27 27 H 1.09002 * 109.47091 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47468 * 300.00516 * 1 2 3 29 29 H 1.08996 * 109.47508 * 60.00411 * 1 2 3 30 30 H 1.09002 * 109.46874 * 270.00621 * 7 6 4 31 31 H 1.09001 * 109.47047 * 29.99649 * 7 6 4 32 32 H 1.08997 * 109.47642 * 149.99943 * 7 6 4 33 33 H 1.09008 * 109.46759 * 329.99320 * 8 6 4 34 34 H 1.09001 * 109.47212 * 209.99824 * 8 6 4 35 35 H 0.96999 * 120.00399 * 179.97438 * 12 11 9 36 36 H 1.08998 * 109.46240 * 294.17680 * 18 17 2 37 37 H 1.09000 * 109.46159 * 54.15852 * 18 17 2 38 38 H 1.09007 * 109.50115 * 179.12103 * 19 18 17 39 39 H 1.08998 * 109.50416 * 299.19875 * 19 18 17 40 40 H 1.08994 * 109.52643 * 62.24496 * 20 19 18 41 41 H 1.08997 * 109.52379 * 182.37949 * 20 19 18 42 42 H 1.08998 * 115.55160 * 274.41577 * 23 21 20 43 43 H 1.09001 * 117.49545 * 0.02562 * 24 23 21 44 44 H 1.08997 * 117.49898 * 145.01768 * 24 23 21 45 45 H 1.09003 * 117.49858 * 214.97949 * 25 23 21 46 46 H 1.09000 * 117.50076 * 359.97438 * 25 23 21 47 47 H 1.09000 * 109.46399 * 305.85322 * 26 17 2 48 48 H 1.08996 * 109.46046 * 65.82374 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.3022 -1.8918 -1.1809 6 7 2.1817 -0.0330 -2.3859 7 6 1.8553 1.3939 -2.4460 8 6 2.6696 -0.7238 -3.5822 9 6 1.5003 -1.2805 -4.3528 10 1 0.4944 -1.1348 -3.9876 11 6 1.7147 -1.9768 -5.5234 12 7 0.6943 -2.4622 -6.1960 13 14 3.4546 -2.2295 -6.1545 14 1 3.8256 -1.1030 -7.0481 15 1 4.3950 -2.2810 -5.0063 16 1 3.5264 -3.5055 -6.9107 17 7 2.0196 -0.6924 1.1995 18 6 3.4805 -0.8376 1.1638 19 6 3.9681 -1.4292 2.4883 20 6 3.3063 -2.7925 2.7071 21 6 1.7848 -2.6207 2.6917 22 1 1.4837 -1.9699 3.5128 23 6 1.1148 -3.9870 2.8509 24 6 0.0449 -4.1271 3.9356 25 6 1.4173 -4.7779 4.1252 26 6 1.3604 -1.9945 1.3614 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 0.8078 1.5157 -2.7219 31 1 2.0291 1.8478 -1.4703 32 1 2.4860 1.8800 -3.1903 33 1 3.3312 -1.5382 -3.2870 34 1 3.2167 -0.0206 -4.2101 35 1 0.8450 -2.9518 -7.0198 36 1 3.7596 -1.5009 0.3451 37 1 3.9390 0.1396 1.0120 38 1 5.0508 -1.5514 2.4555 39 1 3.7021 -0.7593 3.3059 40 1 3.6039 -3.4741 1.9103 41 1 3.6182 -3.1986 3.6693 42 1 0.9742 -4.5519 1.9294 43 1 -0.1820 -3.2457 4.5355 44 1 -0.7994 -4.7844 3.7278 45 1 1.4754 -5.8633 4.0421 46 1 2.0940 -4.3252 4.8500 47 1 0.2790 -1.8577 1.3529 48 1 1.6495 -2.6523 0.5418 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344127955.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:29 Heat of formation + Delta-G solvation = -4.637915 kcal Electronic energy + Delta-G solvation = -25343.310795 eV Core-core repulsion = 22013.049425 eV Total energy + Delta-G solvation = -3330.261371 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.31237 -38.51534 -36.65624 -34.90576 -33.85845 -32.49944 -30.62609 -29.81541 -28.35302 -26.05488 -24.86131 -23.89504 -22.98170 -22.30045 -21.24173 -20.38712 -19.60316 -18.27007 -16.99336 -16.71508 -16.34967 -15.52003 -14.93797 -14.77823 -14.65682 -14.38581 -13.99338 -13.68243 -13.50672 -13.30852 -13.00522 -12.81458 -12.45633 -12.30874 -12.11947 -11.91844 -11.70558 -11.70117 -11.60486 -11.44903 -11.16377 -10.99215 -10.73581 -10.62635 -10.52565 -10.49110 -10.39627 -10.12786 -10.00378 -9.67447 -9.64671 -9.46798 -8.61161 -7.80944 -7.66359 -6.10535 -4.09108 3.24712 3.26903 3.33070 3.37108 3.75094 3.85844 4.02902 4.37787 4.65592 4.83894 4.88449 4.97861 5.02070 5.10898 5.16355 5.22974 5.25337 5.33698 5.43762 5.55754 5.59067 5.63156 5.69723 5.73698 5.79349 5.83104 5.88366 5.94623 5.99156 6.00357 6.05467 6.10851 6.12839 6.15932 6.24819 6.30232 6.34545 6.43963 6.62950 6.65379 6.93643 7.18065 7.27485 7.32540 7.59417 8.21935 8.45232 8.90278 8.95924 9.49883 11.02928 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.004270 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.182729 B = 6555.352829 C = 6945.070027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.061 3.939 3 H 0.099 0.901 4 C 0.483 3.517 5 O -0.539 6.539 6 N -0.595 5.595 7 C 0.082 3.918 8 C 0.215 3.785 9 C -0.527 4.527 10 H 0.073 0.927 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.874 3.126 14 H -0.275 1.275 15 H -0.265 1.265 16 H -0.284 1.284 17 N -0.511 5.511 18 C 0.040 3.960 19 C -0.111 4.111 20 C -0.112 4.112 21 C -0.048 4.048 22 H 0.071 0.929 23 C -0.143 4.143 24 C -0.181 4.181 25 C -0.180 4.180 26 C 0.039 3.961 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.039 0.961 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.074 0.926 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 4.573 19.036 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.051 4.051 3 H 0.117 0.883 4 C 0.268 3.732 5 O -0.417 6.417 6 N -0.327 5.327 7 C -0.062 4.062 8 C 0.094 3.906 9 C -0.565 4.565 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.701 3.299 14 H -0.201 1.201 15 H -0.190 1.190 16 H -0.209 1.209 17 N -0.234 5.234 18 C -0.088 4.088 19 C -0.149 4.149 20 C -0.150 4.150 21 C -0.067 4.067 22 H 0.089 0.911 23 C -0.162 4.162 24 C -0.218 4.218 25 C -0.218 4.218 26 C -0.088 4.088 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.092 0.908 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.834 4.143 19.283 19.925 hybrid contribution 0.938 -0.595 -1.379 1.771 sum 3.772 3.548 17.903 18.637 Atomic orbital electron populations 1.21811 0.92227 1.03316 1.02552 1.21920 0.97333 0.98689 0.87155 0.88283 1.21555 0.78777 0.87809 0.85020 1.90587 1.51187 1.15472 1.84438 1.47993 1.64156 1.09510 1.11028 1.21728 1.01286 0.81889 1.01259 1.19669 0.95979 0.92742 0.82235 1.21305 0.93829 1.34780 1.06615 0.90841 1.24852 0.96867 0.94874 0.96389 1.69890 1.30282 1.36878 1.16554 0.86868 0.85517 0.78093 0.79390 1.20087 1.18951 1.20922 1.62469 1.05498 1.21379 1.34085 1.22242 0.87937 1.00590 0.98055 1.21518 0.99168 0.96703 0.97464 1.21580 0.94861 0.97114 1.01411 1.20709 0.94514 0.93237 0.98223 0.91072 1.22325 1.02213 0.97973 0.93676 1.22997 0.92572 1.03061 1.03121 1.22903 0.99159 0.99113 1.00576 1.22462 0.98804 0.90286 0.97256 0.91535 0.91128 0.91490 0.92678 0.92127 0.91446 0.94313 0.95851 0.92567 0.92453 0.91654 0.91904 0.91664 0.91886 0.92310 0.87752 0.88937 0.89113 0.89148 0.89007 0.90769 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.59 37.16 0.32 -1.64 16 2 C 0.06 0.92 2.29 -68.87 -0.16 0.77 16 3 H 0.10 1.29 6.01 -51.93 -0.31 0.98 16 4 C 0.48 9.62 5.93 -10.99 -0.07 9.55 16 5 O -0.54 -12.74 11.91 5.55 0.07 -12.67 16 6 N -0.60 -12.16 2.86 -182.95 -0.52 -12.68 16 7 C 0.08 1.25 10.08 59.85 0.60 1.85 16 8 C 0.21 5.26 4.27 -5.19 -0.02 5.24 16 9 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 10 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 11 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 12 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 13 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 16 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 17 N -0.51 -7.44 4.73 -228.08 -1.08 -8.51 16 18 C 0.04 0.57 4.90 -3.83 -0.02 0.55 16 19 C -0.11 -1.32 6.09 -26.65 -0.16 -1.48 16 20 C -0.11 -1.36 5.09 -26.61 -0.14 -1.49 16 21 C -0.05 -0.60 2.50 -90.53 -0.23 -0.82 16 22 H 0.07 0.86 7.90 -51.93 -0.41 0.45 16 23 C -0.14 -1.67 5.15 -90.62 -0.47 -2.14 16 24 C -0.18 -1.80 10.18 -26.69 -0.27 -2.08 16 25 C -0.18 -1.78 9.77 -26.69 -0.26 -2.04 16 26 C 0.04 0.59 3.90 -3.83 -0.01 0.57 16 27 H 0.07 1.02 6.19 -51.93 -0.32 0.70 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.92 7.89 -51.93 -0.41 0.51 16 30 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 31 H 0.06 0.71 5.83 -51.93 -0.30 0.41 16 32 H 0.07 0.96 7.89 -51.93 -0.41 0.55 16 33 H 0.04 1.03 6.48 -51.92 -0.34 0.70 16 34 H 0.02 0.54 7.32 -51.93 -0.38 0.16 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.06 1.02 6.04 -51.93 -0.31 0.71 16 37 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.62 7.39 -51.93 -0.38 0.24 16 42 H 0.10 1.35 8.11 -51.93 -0.42 0.93 16 43 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.09 0.84 7.64 -51.93 -0.40 0.45 16 47 H 0.07 1.09 5.82 -51.93 -0.30 0.79 16 48 H 0.08 1.43 5.65 -51.93 -0.29 1.14 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -32.74 361.53 -9.68 -42.42 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -8.38 Total: 2.67 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -1.32 Total: -6.65 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.83 Total: -48.20 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.07 Total: -12.67 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.74 -9.68 -42.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344127955.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.783 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds