Wall clock time and date at job start Fri Apr 10 2020 20:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47091 * 2 1 4 4 C 1.50696 * 109.47186 * 239.99833 * 2 1 3 5 5 O 1.21285 * 120.00155 * 266.07920 * 4 2 1 6 6 N 1.34773 * 120.00255 * 86.08172 * 4 2 1 7 7 C 1.46504 * 120.00114 * 359.97438 * 6 4 2 8 8 C 1.46499 * 120.00401 * 180.02562 * 6 4 2 9 9 C 1.50701 * 109.47546 * 89.99724 * 8 6 4 10 10 H 1.08000 * 119.99287 * 359.97438 * 9 8 6 11 11 C 1.37875 * 120.00311 * 180.02562 * 9 8 6 12 12 N 1.31506 * 120.00071 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99863 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47333 * 270.00407 * 13 11 9 15 15 H 1.48504 * 109.46874 * 30.01101 * 13 11 9 16 16 H 1.48501 * 109.46908 * 150.00358 * 13 11 9 17 17 N 1.46898 * 109.47026 * 119.99507 * 2 1 3 18 18 C 1.46852 * 110.99854 * 173.98672 * 17 2 1 19 19 C 1.53038 * 109.52209 * 174.16075 * 18 17 2 20 20 C 1.53117 * 109.27759 * 59.18464 * 19 18 17 21 21 C 1.53125 * 109.15670 * 302.34222 * 20 19 18 22 22 H 1.09004 * 109.50369 * 297.71028 * 21 20 19 23 23 C 1.53001 * 109.50098 * 177.63727 * 21 20 19 24 24 C 1.53002 * 117.49918 * 128.74580 * 23 21 20 25 25 C 1.53003 * 117.49919 * 60.08732 * 23 21 20 26 26 C 1.46847 * 110.99820 * 49.78037 * 17 2 1 27 27 H 1.09002 * 109.47091 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47468 * 300.00516 * 1 2 3 29 29 H 1.08996 * 109.47508 * 60.00411 * 1 2 3 30 30 H 1.09002 * 109.46874 * 270.00621 * 7 6 4 31 31 H 1.09001 * 109.47047 * 29.99649 * 7 6 4 32 32 H 1.08997 * 109.47642 * 149.99943 * 7 6 4 33 33 H 1.09008 * 109.46759 * 329.99320 * 8 6 4 34 34 H 1.09001 * 109.47212 * 209.99824 * 8 6 4 35 35 H 0.96999 * 120.00399 * 179.97438 * 12 11 9 36 36 H 1.08998 * 109.46240 * 294.17680 * 18 17 2 37 37 H 1.09000 * 109.46159 * 54.15852 * 18 17 2 38 38 H 1.09007 * 109.50115 * 179.12103 * 19 18 17 39 39 H 1.08998 * 109.50416 * 299.19875 * 19 18 17 40 40 H 1.08994 * 109.52643 * 62.24496 * 20 19 18 41 41 H 1.08997 * 109.52379 * 182.37949 * 20 19 18 42 42 H 1.08998 * 115.55160 * 274.41577 * 23 21 20 43 43 H 1.09001 * 117.49545 * 0.02562 * 24 23 21 44 44 H 1.08997 * 117.49898 * 145.01768 * 24 23 21 45 45 H 1.09003 * 117.49858 * 214.97949 * 25 23 21 46 46 H 1.09000 * 117.50076 * 359.97438 * 25 23 21 47 47 H 1.09000 * 109.46399 * 305.85322 * 26 17 2 48 48 H 1.08996 * 109.46046 * 65.82374 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.3022 -1.8918 -1.1809 6 7 2.1817 -0.0330 -2.3859 7 6 1.8553 1.3939 -2.4460 8 6 2.6696 -0.7238 -3.5822 9 6 1.5003 -1.2805 -4.3528 10 1 0.4944 -1.1348 -3.9876 11 6 1.7147 -1.9768 -5.5234 12 7 0.6943 -2.4622 -6.1960 13 14 3.4546 -2.2295 -6.1545 14 1 3.8256 -1.1030 -7.0481 15 1 4.3950 -2.2810 -5.0063 16 1 3.5264 -3.5055 -6.9107 17 7 2.0196 -0.6924 1.1995 18 6 3.4805 -0.8376 1.1638 19 6 3.9681 -1.4292 2.4883 20 6 3.3063 -2.7925 2.7071 21 6 1.7848 -2.6207 2.6917 22 1 1.4837 -1.9699 3.5128 23 6 1.1148 -3.9870 2.8509 24 6 0.0449 -4.1271 3.9356 25 6 1.4173 -4.7779 4.1252 26 6 1.3604 -1.9945 1.3614 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 0.8078 1.5157 -2.7219 31 1 2.0291 1.8478 -1.4703 32 1 2.4860 1.8800 -3.1903 33 1 3.3312 -1.5382 -3.2870 34 1 3.2167 -0.0206 -4.2101 35 1 0.8450 -2.9518 -7.0198 36 1 3.7596 -1.5009 0.3451 37 1 3.9390 0.1396 1.0120 38 1 5.0508 -1.5514 2.4555 39 1 3.7021 -0.7593 3.3059 40 1 3.6039 -3.4741 1.9103 41 1 3.6182 -3.1986 3.6693 42 1 0.9742 -4.5519 1.9294 43 1 -0.1820 -3.2457 4.5355 44 1 -0.7994 -4.7844 3.7278 45 1 1.4754 -5.8633 4.0421 46 1 2.0940 -4.3252 4.8500 47 1 0.2790 -1.8577 1.3529 48 1 1.6495 -2.6523 0.5418 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344127955.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:28 Heat of formation + Delta-G solvation = -26.186643 kcal Electronic energy + Delta-G solvation = -25344.245218 eV Core-core repulsion = 22013.049425 eV Total energy + Delta-G solvation = -3331.195794 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66763 -39.71465 -37.76394 -36.56496 -35.12512 -34.55024 -31.68328 -31.21578 -30.06216 -27.46622 -26.18072 -25.09937 -24.47431 -23.22249 -22.57549 -21.50243 -20.65277 -19.75267 -19.18536 -18.14172 -17.61263 -16.90836 -16.41876 -16.18700 -15.87343 -15.63325 -15.37373 -15.10228 -14.65638 -14.63585 -14.35985 -14.14721 -13.84314 -13.71684 -13.67790 -13.45162 -13.11008 -12.86620 -12.74327 -12.61994 -12.42195 -12.39390 -12.28931 -12.06270 -11.89960 -11.80476 -11.64982 -11.44803 -11.41158 -11.04057 -10.95832 -10.86056 -10.60198 -9.43897 -9.11124 -8.38077 -6.42999 1.27047 1.31781 1.42196 1.73039 2.26787 2.33214 2.80189 2.95848 2.97146 3.62594 3.74069 3.88580 3.90820 4.01991 4.11894 4.13445 4.17910 4.26083 4.42821 4.43159 4.56868 4.63552 4.65317 4.66718 4.70625 4.76149 4.81623 4.85269 4.90147 4.91498 4.93131 4.97575 5.04917 5.09000 5.12267 5.14119 5.22881 5.28521 5.30343 5.37381 5.42171 5.56423 5.62930 5.96579 6.06876 6.20380 6.57841 6.67590 7.17968 7.40001 8.79055 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.004270 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.182729 B = 6555.352829 C = 6945.070027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.069 3.931 3 H 0.133 0.867 4 C 0.472 3.528 5 O -0.586 6.586 6 N -0.606 5.606 7 C 0.075 3.925 8 C 0.224 3.776 9 C -0.535 4.535 10 H 0.027 0.973 11 C 0.012 3.988 12 N -0.945 5.945 13 Si 0.948 3.052 14 H -0.249 1.249 15 H -0.260 1.260 16 H -0.281 1.281 17 N -0.496 5.496 18 C 0.038 3.962 19 C -0.105 4.105 20 C -0.111 4.111 21 C -0.038 4.038 22 H 0.086 0.914 23 C -0.167 4.167 24 C -0.172 4.172 25 C -0.167 4.167 26 C 0.043 3.957 27 H 0.041 0.959 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.014 0.986 34 H 0.047 0.953 35 H 0.269 0.731 36 H 0.016 0.984 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.034 0.966 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.106 0.894 47 H 0.073 0.927 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.313 6.671 21.377 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.043 4.043 3 H 0.150 0.850 4 C 0.260 3.740 5 O -0.467 6.467 6 N -0.337 5.337 7 C -0.066 4.066 8 C 0.101 3.899 9 C -0.573 4.573 10 H 0.045 0.955 11 C -0.186 4.186 12 N -0.585 5.585 13 Si 0.771 3.229 14 H -0.173 1.173 15 H -0.184 1.184 16 H -0.207 1.207 17 N -0.219 5.219 18 C -0.090 4.090 19 C -0.142 4.142 20 C -0.148 4.148 21 C -0.056 4.056 22 H 0.104 0.896 23 C -0.186 4.186 24 C -0.208 4.208 25 C -0.204 4.204 26 C -0.084 4.084 27 H 0.060 0.940 28 H 0.122 0.878 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.099 0.901 33 H 0.032 0.968 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.053 0.947 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.123 0.877 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.124 0.876 47 H 0.092 0.908 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.291 6.289 21.643 22.943 hybrid contribution 0.373 -1.279 -2.099 2.486 sum 4.664 5.010 19.544 20.708 Atomic orbital electron populations 1.21810 0.91223 1.02258 1.04142 1.22097 0.98005 0.99521 0.84686 0.84973 1.22627 0.77662 0.87524 0.86203 1.90585 1.52882 1.17849 1.85351 1.48142 1.64088 1.11597 1.09864 1.22034 1.01406 0.78953 1.04249 1.19305 0.93967 0.92902 0.83694 1.21532 0.93305 1.35255 1.07225 0.95496 1.25844 1.01838 0.94339 0.96613 1.70046 1.33064 1.38054 1.17353 0.85710 0.79352 0.78835 0.79041 1.17268 1.18391 1.20701 1.62612 1.05693 1.20687 1.32883 1.22299 0.87765 1.00704 0.98229 1.21516 0.99840 0.96462 0.96406 1.21581 0.94718 0.97027 1.01510 1.20625 0.94744 0.93516 0.96758 0.89561 1.22213 1.04665 0.98057 0.93690 1.23080 0.92594 1.03521 1.01652 1.22984 0.99212 0.99306 0.98904 1.22369 0.98818 0.89896 0.97353 0.93972 0.87785 0.91526 0.92942 0.87943 0.90132 0.96779 0.93521 0.92252 0.96591 0.89979 0.90654 0.89681 0.94744 0.90003 0.90429 0.87678 0.88811 0.88704 0.87573 0.90826 0.95162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 8.59 71.98 0.62 -3.03 16 2 C 0.07 2.00 2.29 44.17 0.10 2.10 16 3 H 0.13 2.96 6.01 -2.39 -0.01 2.94 16 4 C 0.47 19.23 5.93 87.66 0.52 19.75 16 5 O -0.59 -29.48 11.91 -3.05 -0.04 -29.52 16 6 N -0.61 -24.83 2.86 -851.11 -2.43 -27.26 16 7 C 0.08 2.15 10.08 127.77 1.29 3.44 16 8 C 0.22 11.16 4.27 85.63 0.37 11.52 16 9 C -0.53 -32.09 9.94 25.60 0.25 -31.83 16 10 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 11 C 0.01 0.70 5.47 84.66 0.46 1.16 16 12 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 13 Si 0.95 45.27 27.47 68.60 1.88 47.15 16 14 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16 15 H -0.26 -12.09 6.54 99.48 0.65 -11.44 16 16 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 17 N -0.50 -13.90 4.73 -875.52 -4.14 -18.04 16 18 C 0.04 1.06 4.90 86.33 0.42 1.48 16 19 C -0.10 -2.27 6.09 30.65 0.19 -2.09 16 20 C -0.11 -2.58 5.09 30.68 0.16 -2.43 16 21 C -0.04 -0.91 2.50 -10.74 -0.03 -0.94 16 22 H 0.09 1.85 7.90 -2.39 -0.02 1.83 16 23 C -0.17 -3.92 5.15 -10.79 -0.06 -3.97 16 24 C -0.17 -3.17 10.18 30.62 0.31 -2.86 16 25 C -0.17 -3.01 9.77 30.62 0.30 -2.71 16 26 C 0.04 1.33 3.90 86.33 0.34 1.67 16 27 H 0.04 1.32 6.19 -2.39 -0.01 1.31 16 28 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.07 1.78 7.89 -2.39 -0.02 1.76 16 30 H 0.05 1.52 8.12 -2.39 -0.02 1.50 16 31 H 0.10 2.02 5.83 -2.39 -0.01 2.01 16 32 H 0.08 2.08 7.89 -2.39 -0.02 2.06 16 33 H 0.01 0.77 6.48 -2.38 -0.02 0.76 16 34 H 0.05 2.11 7.32 -2.39 -0.02 2.09 16 35 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 36 H 0.02 0.58 6.04 -2.39 -0.01 0.57 16 37 H 0.08 1.99 8.12 -2.39 -0.02 1.97 16 38 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 1.53 7.39 -2.39 -0.02 1.51 16 42 H 0.08 2.21 8.11 -2.39 -0.02 2.19 16 43 H 0.10 1.69 8.05 -2.39 -0.02 1.67 16 44 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.11 1.63 7.64 -2.39 -0.02 1.61 16 47 H 0.07 2.22 5.82 -2.39 -0.01 2.21 16 48 H 0.03 1.23 5.65 -2.39 -0.01 1.22 16 Total: -1.00 -76.99 361.53 1.69 -75.31 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.87 Total: 21.38 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 5.24 Total: -8.73 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -6.27 Total: -105.58 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.04 Total: -29.52 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.88 Total: 47.15 kcal Total: -76.99 1.69 -75.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344127955.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.119 kcal (2) G-P(sol) polarization free energy of solvation -76.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds