Wall clock time and date at job start Fri Apr 10 2020 20:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47001 * 2 1 4 4 C 1.50701 * 109.46890 * 239.99956 * 2 1 3 5 5 O 1.21280 * 120.00483 * 270.76200 * 4 2 1 6 6 N 1.34783 * 119.99533 * 90.48449 * 4 2 1 7 7 C 1.46499 * 120.00362 * 355.06859 * 6 4 2 8 8 C 1.46503 * 119.99570 * 175.06926 * 6 4 2 9 9 C 1.50694 * 109.47209 * 90.00118 * 8 6 4 10 10 H 1.08002 * 120.00260 * 359.97438 * 9 8 6 11 11 C 1.37877 * 119.99976 * 179.97438 * 9 8 6 12 12 N 1.31511 * 120.00393 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99907 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46838 * 90.00474 * 13 11 9 15 15 H 1.48501 * 109.46984 * 210.00178 * 13 11 9 16 16 H 1.48496 * 109.47318 * 330.00371 * 13 11 9 17 17 N 1.46901 * 109.46986 * 120.00410 * 2 1 3 18 18 C 1.46853 * 110.99547 * 175.05135 * 17 2 1 19 19 C 1.53034 * 109.52178 * 185.83255 * 18 17 2 20 20 C 1.53113 * 109.28172 * 300.82510 * 19 18 17 21 21 C 1.53120 * 109.15997 * 57.65541 * 20 19 18 22 22 H 1.09003 * 109.50713 * 62.28442 * 21 20 19 23 23 C 1.53006 * 109.50220 * 182.40155 * 21 20 19 24 24 C 1.52994 * 117.50168 * 248.42107 * 23 21 20 25 25 C 1.52997 * 60.00100 * 252.51528 * 24 23 21 26 26 C 1.46845 * 110.99927 * 299.26131 * 17 2 1 27 27 H 1.09000 * 109.47255 * 305.42870 * 1 2 3 28 28 H 1.09001 * 109.47417 * 65.43422 * 1 2 3 29 29 H 1.09002 * 109.46896 * 185.43362 * 1 2 3 30 30 H 1.08998 * 109.47026 * 94.65157 * 7 6 4 31 31 H 1.09000 * 109.46904 * 214.65905 * 7 6 4 32 32 H 1.09002 * 109.46933 * 334.65502 * 7 6 4 33 33 H 1.09006 * 109.46589 * 210.00117 * 8 6 4 34 34 H 1.09001 * 109.47251 * 329.99507 * 8 6 4 35 35 H 0.96993 * 120.00707 * 179.97438 * 12 11 9 36 36 H 1.08995 * 109.46773 * 305.85851 * 18 17 2 37 37 H 1.09005 * 109.46033 * 65.82670 * 18 17 2 38 38 H 1.08998 * 109.50200 * 180.87770 * 19 18 17 39 39 H 1.09005 * 109.53229 * 60.78906 * 19 18 17 40 40 H 1.08994 * 109.52497 * 297.74538 * 20 19 18 41 41 H 1.09007 * 109.57534 * 177.58534 * 20 19 18 42 42 H 1.08997 * 115.54633 * 34.13279 * 23 21 20 43 43 H 1.09005 * 117.49701 * 0.02562 * 24 23 21 44 44 H 1.08995 * 117.50212 * 145.01803 * 24 23 21 45 45 H 1.09001 * 117.49448 * 252.50874 * 25 24 23 46 46 H 1.08994 * 117.50130 * 107.49360 * 25 24 23 47 47 H 1.08996 * 109.46092 * 294.17901 * 26 17 2 48 48 H 1.08995 * 109.46024 * 54.15781 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.2213 -1.9081 -1.2046 6 7 2.2662 -0.0156 -2.3615 7 6 1.9307 1.4089 -2.4287 8 6 2.8559 -0.6849 -3.5236 9 6 1.7584 -1.2427 -4.3926 10 1 0.7249 -1.1121 -4.1076 11 6 2.0736 -1.9197 -5.5516 12 7 3.3321 -2.0792 -5.8985 13 14 0.7131 -2.6118 -6.6284 14 1 0.3069 -1.5924 -7.6289 15 1 1.2055 -3.8248 -7.3295 16 1 -0.4544 -2.9683 -5.7829 17 7 2.0196 -0.6926 1.1994 18 6 3.4828 -0.8154 1.1756 19 6 3.9441 -1.6653 2.3617 20 6 3.4899 -1.0029 3.6653 21 6 1.9672 -0.8428 3.6438 22 1 1.4987 -1.8256 3.5900 23 6 1.5108 -0.1274 4.9169 24 6 0.7010 -0.9376 5.9310 25 6 0.0122 0.1329 5.0822 26 6 1.5633 -0.0167 2.4205 27 1 -0.3634 0.5957 0.8374 28 1 -0.3634 0.4272 -0.9346 29 1 -0.3633 -1.0231 0.0973 30 1 2.8122 2.0017 -2.1847 31 1 1.5940 1.6557 -3.4356 32 1 1.1361 1.6290 -1.7157 33 1 3.4438 0.0325 -4.0963 34 1 3.5008 -1.4966 -3.1869 35 1 3.5539 -2.5558 -6.7136 36 1 3.7923 -1.2917 0.2453 37 1 3.9316 0.1757 1.2428 38 1 5.0312 -1.7433 2.3526 39 1 3.5072 -2.6613 2.2881 40 1 3.9579 -0.0230 3.7583 41 1 3.7786 -1.6263 4.5116 42 1 2.1980 0.6238 5.3060 43 1 0.4937 -1.9806 5.6914 44 1 0.8555 -0.7198 6.9877 45 1 -0.2865 1.0551 5.5807 46 1 -0.6485 -0.2056 4.2842 47 1 2.0210 0.9706 2.4818 48 1 0.4786 0.0869 2.3945 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344127958.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:32 Heat of formation + Delta-G solvation = -11.412213 kcal Electronic energy + Delta-G solvation = -24931.370670 eV Core-core repulsion = 21600.815544 eV Total energy + Delta-G solvation = -3330.555126 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.04436 -38.65319 -36.76270 -34.72374 -33.96772 -32.51665 -30.60650 -29.92521 -27.73689 -25.94093 -24.90902 -23.88308 -23.26467 -22.43239 -21.31645 -20.53822 -19.73288 -18.22019 -16.63900 -16.47758 -16.34562 -15.42535 -15.11323 -14.80909 -14.71129 -14.17175 -14.12743 -13.76993 -13.57679 -13.32407 -13.01994 -12.92460 -12.44183 -12.13649 -12.02023 -11.87223 -11.75660 -11.64429 -11.56152 -11.36372 -11.15224 -11.10186 -10.87505 -10.77828 -10.68348 -10.55870 -10.45331 -10.13916 -10.12348 -9.91455 -9.58482 -8.73367 -8.41095 -8.08865 -7.59176 -6.01604 -4.05894 3.31891 3.38152 3.39922 3.43967 3.56716 3.76132 4.18959 4.46185 4.47770 4.70015 4.72294 4.86064 4.96808 5.07644 5.09746 5.29541 5.31543 5.34384 5.38235 5.41596 5.43818 5.51644 5.55102 5.63915 5.66516 5.71033 5.73734 5.82720 5.87679 5.91735 5.92754 5.97142 5.99224 6.09975 6.20027 6.21957 6.31064 6.38351 6.46940 7.01388 7.20751 7.26860 7.45525 7.58438 7.95160 8.26529 8.46196 8.94159 9.16656 9.59157 11.06526 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.026489 B = 0.003440 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.773252 B = 8138.300262 C = 8390.423961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.066 3.934 3 H 0.053 0.947 4 C 0.509 3.491 5 O -0.519 6.519 6 N -0.606 5.606 7 C 0.082 3.918 8 C 0.248 3.752 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.515 5.515 18 C 0.051 3.949 19 C -0.114 4.114 20 C -0.111 4.111 21 C -0.053 4.053 22 H 0.080 0.920 23 C -0.146 4.146 24 C -0.179 4.179 25 C -0.181 4.181 26 C 0.063 3.937 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.031 0.969 34 H 0.041 0.959 35 H 0.263 0.737 36 H 0.088 0.912 37 H 0.025 0.975 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.029 0.971 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 8.299 20.701 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.046 4.046 3 H 0.071 0.929 4 C 0.294 3.706 5 O -0.394 6.394 6 N -0.339 5.339 7 C -0.062 4.062 8 C 0.129 3.871 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.536 5.536 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.240 5.240 18 C -0.077 4.077 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.072 4.072 22 H 0.099 0.901 23 C -0.164 4.164 24 C -0.216 4.216 25 C -0.218 4.218 26 C -0.065 4.065 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.114 0.886 47 H 0.048 0.952 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.938 7.097 20.530 21.920 hybrid contribution -0.379 0.619 -0.732 1.031 sum -3.318 7.716 19.797 21.506 Atomic orbital electron populations 1.21770 0.92514 1.03542 1.01837 1.21660 0.97142 0.95652 0.90151 0.92949 1.20076 0.78934 0.87737 0.83850 1.90675 1.50857 1.14064 1.83825 1.48194 1.61937 1.09378 1.14387 1.21667 0.99131 0.82598 1.02849 1.19251 0.93858 0.92901 0.81139 1.21428 0.93250 1.35431 1.06065 0.92475 1.24936 0.95623 0.95907 0.97696 1.69925 1.16650 1.42261 1.24719 0.86502 0.82108 0.78572 0.80285 1.20699 1.21101 1.19855 1.61645 1.11141 1.50971 1.00253 1.22186 0.86796 0.98181 1.00498 1.21537 1.00085 1.00097 0.93417 1.21602 0.94876 1.00555 0.97839 1.20758 0.96043 0.99031 0.91340 0.90138 1.22321 0.93976 1.02439 0.97696 1.22989 1.04728 0.97277 0.96606 1.22938 0.95312 1.00390 1.03177 1.22131 1.00556 0.94796 0.88987 0.92141 0.91567 0.90867 0.93962 0.90837 0.92345 0.95104 0.94068 0.92758 0.89336 0.95665 0.91630 0.90812 0.92467 0.91892 0.88074 0.88732 0.89132 0.89067 0.88595 0.95236 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.55 37.16 0.32 -1.62 16 2 C 0.07 1.05 1.62 -68.86 -0.11 0.94 16 3 H 0.05 0.75 6.75 -51.93 -0.35 0.40 16 4 C 0.51 10.81 5.61 -10.98 -0.06 10.75 16 5 O -0.52 -13.36 15.07 5.56 0.08 -13.28 16 6 N -0.61 -13.06 2.86 -182.95 -0.52 -13.59 16 7 C 0.08 1.33 9.88 59.85 0.59 1.92 16 8 C 0.25 6.56 5.14 -5.20 -0.03 6.54 16 9 C -0.52 -15.04 9.39 -34.44 -0.32 -15.36 16 10 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 13 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 17 N -0.51 -7.82 4.29 -228.08 -0.98 -8.80 16 18 C 0.05 0.78 5.10 -3.83 -0.02 0.76 16 19 C -0.11 -1.44 6.09 -26.66 -0.16 -1.60 16 20 C -0.11 -1.16 5.27 -26.61 -0.14 -1.30 16 21 C -0.05 -0.56 2.50 -90.54 -0.23 -0.78 16 22 H 0.08 0.95 7.90 -51.93 -0.41 0.54 16 23 C -0.15 -1.26 5.15 -90.62 -0.47 -1.73 16 24 C -0.18 -1.42 10.18 -26.74 -0.27 -1.69 16 25 C -0.18 -1.45 9.75 -26.73 -0.26 -1.71 16 26 C 0.06 0.74 4.34 -3.84 -0.02 0.73 16 27 H 0.06 0.67 6.59 -51.93 -0.34 0.32 16 28 H 0.07 0.92 7.23 -51.93 -0.38 0.54 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 32 H 0.06 0.78 5.39 -51.93 -0.28 0.50 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.41 16 34 H 0.04 1.23 7.50 -51.93 -0.39 0.84 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.09 1.66 5.96 -51.93 -0.31 1.36 16 37 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 42 H 0.10 0.83 8.11 -51.93 -0.42 0.41 16 43 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.10 0.80 7.62 -51.93 -0.40 0.41 16 47 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.08 0.87 5.33 -51.93 -0.28 0.59 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -32.70 370.54 -9.97 -42.68 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -8.58 Total: -1.01 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.28 Total: -2.54 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.76 Total: -48.57 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.08 Total: -13.28 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.70 -9.97 -42.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344127958.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.267 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds