Wall clock time and date at job start Fri Apr 10 2020 20:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47001 * 2 1 4 4 C 1.50701 * 109.46890 * 239.99956 * 2 1 3 5 5 O 1.21280 * 120.00483 * 270.76200 * 4 2 1 6 6 N 1.34783 * 119.99533 * 90.48449 * 4 2 1 7 7 C 1.46499 * 120.00362 * 355.06859 * 6 4 2 8 8 C 1.46503 * 119.99570 * 175.06926 * 6 4 2 9 9 C 1.50694 * 109.47209 * 90.00118 * 8 6 4 10 10 H 1.08002 * 120.00260 * 359.97438 * 9 8 6 11 11 C 1.37877 * 119.99976 * 179.97438 * 9 8 6 12 12 N 1.31511 * 120.00393 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99907 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46838 * 90.00474 * 13 11 9 15 15 H 1.48501 * 109.46984 * 210.00178 * 13 11 9 16 16 H 1.48496 * 109.47318 * 330.00371 * 13 11 9 17 17 N 1.46901 * 109.46986 * 120.00410 * 2 1 3 18 18 C 1.46853 * 110.99547 * 175.05135 * 17 2 1 19 19 C 1.53034 * 109.52178 * 185.83255 * 18 17 2 20 20 C 1.53113 * 109.28172 * 300.82510 * 19 18 17 21 21 C 1.53120 * 109.15997 * 57.65541 * 20 19 18 22 22 H 1.09003 * 109.50713 * 62.28442 * 21 20 19 23 23 C 1.53006 * 109.50220 * 182.40155 * 21 20 19 24 24 C 1.52994 * 117.50168 * 248.42107 * 23 21 20 25 25 C 1.52997 * 60.00100 * 252.51528 * 24 23 21 26 26 C 1.46845 * 110.99927 * 299.26131 * 17 2 1 27 27 H 1.09000 * 109.47255 * 305.42870 * 1 2 3 28 28 H 1.09001 * 109.47417 * 65.43422 * 1 2 3 29 29 H 1.09002 * 109.46896 * 185.43362 * 1 2 3 30 30 H 1.08998 * 109.47026 * 94.65157 * 7 6 4 31 31 H 1.09000 * 109.46904 * 214.65905 * 7 6 4 32 32 H 1.09002 * 109.46933 * 334.65502 * 7 6 4 33 33 H 1.09006 * 109.46589 * 210.00117 * 8 6 4 34 34 H 1.09001 * 109.47251 * 329.99507 * 8 6 4 35 35 H 0.96993 * 120.00707 * 179.97438 * 12 11 9 36 36 H 1.08995 * 109.46773 * 305.85851 * 18 17 2 37 37 H 1.09005 * 109.46033 * 65.82670 * 18 17 2 38 38 H 1.08998 * 109.50200 * 180.87770 * 19 18 17 39 39 H 1.09005 * 109.53229 * 60.78906 * 19 18 17 40 40 H 1.08994 * 109.52497 * 297.74538 * 20 19 18 41 41 H 1.09007 * 109.57534 * 177.58534 * 20 19 18 42 42 H 1.08997 * 115.54633 * 34.13279 * 23 21 20 43 43 H 1.09005 * 117.49701 * 0.02562 * 24 23 21 44 44 H 1.08995 * 117.50212 * 145.01803 * 24 23 21 45 45 H 1.09001 * 117.49448 * 252.50874 * 25 24 23 46 46 H 1.08994 * 117.50130 * 107.49360 * 25 24 23 47 47 H 1.08996 * 109.46092 * 294.17901 * 26 17 2 48 48 H 1.08995 * 109.46024 * 54.15781 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.2213 -1.9081 -1.2046 6 7 2.2662 -0.0156 -2.3615 7 6 1.9307 1.4089 -2.4287 8 6 2.8559 -0.6849 -3.5236 9 6 1.7584 -1.2427 -4.3926 10 1 0.7249 -1.1121 -4.1076 11 6 2.0736 -1.9197 -5.5516 12 7 3.3321 -2.0792 -5.8985 13 14 0.7131 -2.6118 -6.6284 14 1 0.3069 -1.5924 -7.6289 15 1 1.2055 -3.8248 -7.3295 16 1 -0.4544 -2.9683 -5.7829 17 7 2.0196 -0.6926 1.1994 18 6 3.4828 -0.8154 1.1756 19 6 3.9441 -1.6653 2.3617 20 6 3.4899 -1.0029 3.6653 21 6 1.9672 -0.8428 3.6438 22 1 1.4987 -1.8256 3.5900 23 6 1.5108 -0.1274 4.9169 24 6 0.7010 -0.9376 5.9310 25 6 0.0122 0.1329 5.0822 26 6 1.5633 -0.0167 2.4205 27 1 -0.3634 0.5957 0.8374 28 1 -0.3634 0.4272 -0.9346 29 1 -0.3633 -1.0231 0.0973 30 1 2.8122 2.0017 -2.1847 31 1 1.5940 1.6557 -3.4356 32 1 1.1361 1.6290 -1.7157 33 1 3.4438 0.0325 -4.0963 34 1 3.5008 -1.4966 -3.1869 35 1 3.5539 -2.5558 -6.7136 36 1 3.7923 -1.2917 0.2453 37 1 3.9316 0.1757 1.2428 38 1 5.0312 -1.7433 2.3526 39 1 3.5072 -2.6613 2.2881 40 1 3.9579 -0.0230 3.7583 41 1 3.7786 -1.6263 4.5116 42 1 2.1980 0.6238 5.3060 43 1 0.4937 -1.9806 5.6914 44 1 0.8555 -0.7198 6.9877 45 1 -0.2865 1.0551 5.5807 46 1 -0.6485 -0.2056 4.2842 47 1 2.0210 0.9706 2.4818 48 1 0.4786 0.0869 2.3945 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344127958.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:32 Heat of formation + Delta-G solvation = -31.869466 kcal Electronic energy + Delta-G solvation = -24932.257763 eV Core-core repulsion = 21600.815544 eV Total energy + Delta-G solvation = -3331.442219 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.36326 -39.86724 -37.71609 -36.53410 -35.20169 -34.54577 -31.57188 -31.16726 -29.62532 -27.44879 -26.24981 -25.10140 -24.66767 -23.23376 -22.57031 -21.43034 -20.65256 -19.77196 -18.68958 -18.06427 -17.59875 -16.85622 -16.40248 -16.18500 -15.77167 -15.67276 -15.39013 -14.94603 -14.71278 -14.41728 -14.39243 -14.06932 -13.95476 -13.73040 -13.47406 -13.23697 -13.09238 -12.87494 -12.70036 -12.66988 -12.60650 -12.46195 -12.33865 -12.21384 -12.01646 -11.73248 -11.67834 -11.59321 -11.35091 -10.93321 -10.67558 -10.65281 -10.39234 -9.42391 -9.22476 -8.23260 -6.37993 1.34907 1.38480 1.48844 1.80961 2.21732 2.40702 2.85787 3.02272 3.05989 3.60351 3.70753 3.91009 3.94257 4.07089 4.12242 4.14228 4.19892 4.22611 4.36211 4.41875 4.52225 4.57284 4.61073 4.65808 4.68063 4.75386 4.80316 4.87445 4.88543 4.90700 4.99512 5.00455 5.03834 5.12943 5.14438 5.19733 5.22720 5.33837 5.35451 5.36927 5.55169 5.57022 5.82189 6.00509 6.05593 6.20014 6.69627 6.79438 7.28067 7.51121 8.83842 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.026489 B = 0.003440 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.773252 B = 8138.300262 C = 8390.423961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.077 3.923 3 H 0.080 0.920 4 C 0.501 3.499 5 O -0.578 6.578 6 N -0.613 5.613 7 C 0.076 3.924 8 C 0.263 3.737 9 C -0.540 4.540 10 H 0.052 0.948 11 C 0.006 3.994 12 N -0.930 5.930 13 Si 0.968 3.032 14 H -0.261 1.261 15 H -0.281 1.281 16 H -0.274 1.274 17 N -0.535 5.535 18 C 0.054 3.946 19 C -0.111 4.111 20 C -0.103 4.103 21 C -0.050 4.050 22 H 0.062 0.938 23 C -0.146 4.146 24 C -0.180 4.180 25 C -0.179 4.179 26 C 0.065 3.935 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.023 0.977 34 H -0.007 1.007 35 H 0.267 0.733 36 H 0.041 0.959 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.113 0.887 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.091 0.909 47 H 0.043 0.957 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.620 10.499 22.483 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.034 4.034 3 H 0.097 0.903 4 C 0.289 3.711 5 O -0.457 6.457 6 N -0.346 5.346 7 C -0.066 4.066 8 C 0.142 3.858 9 C -0.579 4.579 10 H 0.070 0.930 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.792 3.208 14 H -0.186 1.186 15 H -0.206 1.206 16 H -0.199 1.199 17 N -0.261 5.261 18 C -0.074 4.074 19 C -0.149 4.149 20 C -0.141 4.141 21 C -0.069 4.069 22 H 0.080 0.920 23 C -0.165 4.165 24 C -0.216 4.216 25 C -0.215 4.215 26 C -0.062 4.062 27 H 0.118 0.882 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.041 0.959 34 H 0.012 0.988 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.131 0.869 43 H 0.106 0.894 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.109 0.891 47 H 0.061 0.939 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.593 9.354 22.331 24.643 hybrid contribution 0.182 -0.082 -1.268 1.283 sum -4.411 9.272 21.064 23.433 Atomic orbital electron populations 1.21785 0.90698 1.02992 1.03699 1.21601 0.98279 0.95849 0.87688 0.90271 1.21129 0.77539 0.87340 0.85080 1.90635 1.53214 1.16945 1.84891 1.48224 1.61564 1.11562 1.13220 1.21961 1.01438 0.79387 1.03799 1.18702 0.92990 0.91650 0.82497 1.21682 0.93336 1.36087 1.06784 0.92999 1.25873 0.98188 0.96024 0.99155 1.70045 1.18705 1.42825 1.25363 0.85409 0.78682 0.78221 0.78465 1.18606 1.20608 1.19868 1.61619 1.10971 1.52238 1.01231 1.22074 0.87341 0.98703 0.99265 1.21511 1.00553 0.98792 0.94000 1.21557 0.94910 1.01136 0.96489 1.20695 0.95929 0.98257 0.91972 0.91965 1.22227 0.94637 1.02789 0.96826 1.23045 1.04362 0.96998 0.97242 1.23001 0.94601 1.00903 1.03038 1.22231 1.01159 0.95208 0.87570 0.88180 0.91275 0.93125 0.91482 0.91333 0.88837 0.95870 0.98839 0.92394 0.94074 0.94360 0.90706 0.92967 0.91128 0.90613 0.86926 0.89441 0.87841 0.87697 0.89093 0.93853 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 8.55 71.98 0.62 -2.85 16 2 C 0.08 2.37 1.62 44.17 0.07 2.44 16 3 H 0.08 2.01 6.75 -2.39 -0.02 2.00 16 4 C 0.50 21.92 5.61 87.66 0.49 22.41 16 5 O -0.58 -31.71 15.07 -3.03 -0.05 -31.75 16 6 N -0.61 -27.04 2.86 -851.12 -2.43 -29.47 16 7 C 0.08 2.36 9.88 127.77 1.26 3.62 16 8 C 0.26 14.66 5.14 85.63 0.44 15.10 16 9 C -0.54 -32.05 9.39 25.60 0.24 -31.81 16 10 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 11 C 0.01 0.38 5.46 84.66 0.46 0.84 16 12 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 13 Si 0.97 45.93 29.54 68.60 2.03 47.95 16 14 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 17 N -0.53 -15.90 4.29 -875.51 -3.75 -19.65 16 18 C 0.05 1.67 5.10 86.32 0.44 2.11 16 19 C -0.11 -2.82 6.09 30.64 0.19 -2.63 16 20 C -0.10 -1.95 5.27 30.67 0.16 -1.79 16 21 C -0.05 -0.95 2.50 -10.74 -0.03 -0.97 16 22 H 0.06 1.42 7.90 -2.39 -0.02 1.40 16 23 C -0.15 -2.09 5.15 -10.79 -0.06 -2.14 16 24 C -0.18 -2.40 10.18 30.59 0.31 -2.09 16 25 C -0.18 -2.32 9.75 30.59 0.30 -2.02 16 26 C 0.07 1.37 4.34 86.33 0.37 1.74 16 27 H 0.10 1.80 6.59 -2.39 -0.02 1.78 16 28 H 0.07 1.74 7.23 -2.39 -0.02 1.72 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 2.19 8.11 -2.39 -0.02 2.17 16 32 H 0.09 2.22 5.39 -2.39 -0.01 2.20 16 33 H 0.02 1.31 8.07 -2.38 -0.02 1.29 16 34 H -0.01 -0.42 7.50 -2.39 -0.02 -0.44 16 35 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.04 1.66 5.96 -2.39 -0.01 1.64 16 37 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.11 1.40 8.11 -2.39 -0.02 1.38 16 43 H 0.09 1.29 8.05 -2.38 -0.02 1.28 16 44 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.09 1.28 7.62 -2.39 -0.02 1.26 16 47 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.09 1.67 5.33 -2.39 -0.01 1.66 16 Total: -1.00 -75.76 370.54 2.27 -73.50 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.91 Total: 14.59 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 5.28 Total: 1.95 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -5.90 Total: -106.24 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.05 Total: -31.75 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -75.76 2.27 -73.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344127958.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.627 kcal (2) G-P(sol) polarization free energy of solvation -75.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds