Wall clock time and date at job start Fri Apr 10 2020 20:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99840 * 2 1 4 4 C 1.52998 * 109.47110 * 269.99709 * 3 2 1 5 5 C 1.53001 * 109.46989 * 295.00155 * 4 3 2 6 6 C 1.52998 * 109.46989 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47091 * 60.00003 * 6 5 4 8 8 C 1.53001 * 109.47201 * 299.99867 * 7 6 5 9 9 C 1.52998 * 109.46989 * 60.00070 * 8 7 6 10 10 C 1.34773 * 119.99749 * 179.97438 * 2 1 3 11 11 O 1.21593 * 119.99567 * 185.17294 * 10 2 1 12 12 N 1.34776 * 120.00213 * 5.17846 * 10 2 1 13 13 C 1.46500 * 119.99608 * 185.02637 * 12 10 2 14 14 C 1.53004 * 109.46878 * 184.98996 * 13 12 10 15 15 C 1.50705 * 115.54939 * 54.06308 * 14 13 12 16 16 H 1.08005 * 119.99666 * 215.59403 * 15 14 13 17 17 C 1.37877 * 119.99820 * 35.31220 * 15 14 13 18 18 N 1.31510 * 120.00303 * 355.90304 * 17 15 14 19 19 Si 1.86800 * 119.99592 * 175.90480 * 17 15 14 20 20 H 1.48501 * 109.47558 * 60.00187 * 19 17 15 21 21 H 1.48507 * 109.46901 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47288 * 299.99767 * 19 17 15 23 23 C 1.52996 * 117.50077 * 199.73031 * 14 13 12 24 24 C 1.52992 * 117.49995 * 268.39139 * 14 13 12 25 25 H 1.09001 * 109.47901 * 274.16583 * 1 2 3 26 26 H 1.09005 * 109.47262 * 34.16920 * 1 2 3 27 27 H 1.09002 * 109.47203 * 154.16429 * 1 2 3 28 28 H 1.09001 * 109.47010 * 29.99741 * 3 2 1 29 29 H 1.09002 * 109.47148 * 149.99934 * 3 2 1 30 30 H 1.09001 * 109.46780 * 55.00295 * 4 3 2 31 31 H 1.08996 * 109.47031 * 299.99716 * 5 4 3 32 32 H 1.08993 * 109.47093 * 59.99920 * 5 4 3 33 33 H 1.09006 * 109.47446 * 300.00336 * 6 5 4 34 34 H 1.09002 * 109.47591 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.46926 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.47417 * 59.99985 * 7 6 5 37 37 H 1.09001 * 109.47474 * 300.00355 * 8 7 6 38 38 H 1.08993 * 109.47093 * 180.02562 * 8 7 6 39 39 H 1.09002 * 109.47591 * 180.02562 * 9 8 7 40 40 H 1.08993 * 109.47385 * 59.99917 * 9 8 7 41 41 H 0.96997 * 119.99751 * 5.02853 * 12 10 2 42 42 H 1.08995 * 109.47283 * 64.99710 * 13 12 10 43 43 H 1.09004 * 109.47526 * 304.98898 * 13 12 10 44 44 H 0.96996 * 119.99933 * 184.99381 * 18 17 15 45 45 H 1.08996 * 117.50321 * 215.00066 * 23 14 13 46 46 H 1.09000 * 117.49580 * 0.02562 * 23 14 13 47 47 H 1.08999 * 117.49936 * 359.97438 * 24 14 13 48 48 H 1.09003 * 117.49884 * 144.97027 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.3823 0.7061 -2.1264 6 6 3.6369 1.1474 -3.5691 7 6 4.2901 2.5310 -3.5715 8 6 3.3603 3.5352 -2.8876 9 6 3.1057 3.0939 -1.4449 10 6 2.1388 -1.1672 0.0005 11 8 3.3510 -1.1693 0.0955 12 7 1.4690 -2.3321 -0.1043 13 6 2.1887 -3.6033 0.0068 14 6 1.2264 -4.7600 -0.2705 15 6 0.4749 -4.6820 -1.5745 16 1 -0.5437 -5.0363 -1.6328 17 6 1.0858 -4.1529 -2.6916 18 7 2.2945 -3.6428 -2.6006 19 14 0.1964 -4.1606 -4.3343 20 1 -1.0669 -3.3889 -4.2169 21 1 1.0621 -3.5394 -5.3687 22 1 -0.1127 -5.5600 -4.7233 23 6 1.6273 -6.1484 0.2317 24 6 0.5016 -5.3784 0.9266 25 1 -0.3635 0.0746 1.0249 26 1 -0.3634 0.8503 -0.5772 27 1 -0.3634 -0.9250 -0.4479 28 1 1.6083 2.0284 0.5138 29 1 3.1499 1.1384 0.5138 30 1 1.5061 1.7549 -1.9815 31 1 4.3286 0.6617 -1.5874 32 1 2.9168 -0.2794 -2.1251 33 1 2.6903 1.1917 -4.1080 34 1 4.2997 0.4323 -4.0563 35 1 4.4710 2.8456 -4.5994 36 1 5.2366 2.4869 -3.0327 37 1 2.4137 3.5794 -3.4263 38 1 3.8255 4.5209 -2.8897 39 1 2.4429 3.8091 -0.9577 40 1 4.0522 3.0498 -0.9061 41 1 0.5106 -2.3287 -0.2533 42 1 2.5965 -3.7032 1.0126 43 1 3.0018 -3.6252 -0.7189 44 1 2.6955 -3.2058 -3.3682 45 1 1.3476 -7.0055 -0.3809 46 1 2.5766 -6.2377 0.7600 47 1 0.7107 -4.9615 1.9117 48 1 -0.5189 -5.7285 0.7711 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431051663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:16 Heat of formation + Delta-G solvation = -20.916300 kcal Electronic energy + Delta-G solvation = -25579.453388 eV Core-core repulsion = 22248.486133 eV Total energy + Delta-G solvation = -3330.967254 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.65742 -38.07416 -36.70333 -34.80245 -33.06431 -32.15404 -31.15678 -30.44535 -26.75207 -26.30749 -25.47044 -24.11131 -22.30009 -21.27868 -21.08367 -19.48505 -19.20426 -18.84548 -17.43560 -16.11486 -15.67387 -15.49784 -14.79642 -14.52261 -14.16834 -14.00392 -13.90240 -13.59370 -13.44653 -13.08940 -12.72174 -12.48768 -12.32101 -12.02077 -11.90061 -11.82558 -11.56835 -11.35671 -11.32141 -11.04465 -10.91212 -10.73228 -10.68988 -10.49980 -10.25204 -10.20095 -9.94183 -9.73262 -9.64407 -9.13121 -8.93592 -8.79672 -8.24933 -8.13387 -7.55442 -5.92811 -4.14472 3.23123 3.31475 3.32280 3.43248 4.17464 4.32088 4.76017 4.83822 4.93453 4.95923 5.10848 5.29908 5.42287 5.46609 5.52142 5.53864 5.63682 5.70327 5.74775 5.78347 5.78883 5.85844 5.97608 6.03001 6.08481 6.09609 6.20142 6.34806 6.35136 6.38059 6.40428 6.56589 6.59595 6.64683 6.78739 6.79203 6.91263 6.96801 7.02429 7.18973 7.29128 7.61785 7.73568 7.88623 8.06815 8.36506 8.81579 9.04834 9.48438 9.62730 10.94490 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.015731 B = 0.005388 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.458042 B = 5195.550063 C = 6119.840974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.643 5.643 3 C 0.142 3.858 4 C -0.102 4.102 5 C -0.104 4.104 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.116 4.116 9 C -0.111 4.111 10 C 0.704 3.296 11 O -0.600 6.600 12 N -0.701 5.701 13 C 0.183 3.817 14 C 0.038 3.962 15 C -0.500 4.500 16 H 0.058 0.942 17 C 0.077 3.923 18 N -0.858 5.858 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.199 4.199 24 C -0.213 4.213 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.392 0.608 42 H 0.011 0.989 43 H 0.114 0.886 44 H 0.262 0.738 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.521 12.609 1.825 12.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.381 5.381 3 C 0.018 3.982 4 C -0.122 4.122 5 C -0.142 4.142 6 C -0.156 4.156 7 C -0.156 4.156 8 C -0.153 4.153 9 C -0.149 4.149 10 C 0.405 3.595 11 O -0.479 6.479 12 N -0.353 5.353 13 C 0.059 3.941 14 C 0.038 3.962 15 C -0.537 4.537 16 H 0.076 0.924 17 C -0.128 4.128 18 N -0.493 5.493 19 Si 0.718 3.282 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.238 4.238 24 C -0.251 4.251 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.227 0.773 42 H 0.029 0.971 43 H 0.132 0.868 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.450 12.588 1.779 12.721 hybrid contribution -1.137 -0.102 -1.057 1.556 sum -1.587 12.486 0.723 12.608 Atomic orbital electron populations 1.21605 0.80863 1.02724 1.00763 1.46962 1.05647 1.05200 1.80331 1.21223 0.97372 0.83824 0.95822 1.21589 0.99037 0.94729 0.96846 1.21494 0.99683 0.99031 0.93967 1.21540 1.00200 0.95946 0.97964 1.21541 0.98764 0.95562 0.99711 1.21490 0.99622 0.98065 0.96145 1.21510 1.00666 0.96103 0.96594 1.15832 0.85243 0.80290 0.78096 1.90824 1.11934 1.86191 1.58967 1.44935 1.11243 1.04280 1.74880 1.20888 0.96062 0.79656 0.97469 1.19243 0.95712 0.89403 0.91871 1.20413 0.98678 1.42637 0.91956 0.92379 1.24974 0.94609 0.94699 0.98541 1.69866 1.13653 1.35445 1.30381 0.86701 0.79409 0.78354 0.83761 1.20376 1.21272 1.20245 1.22933 0.96941 0.98954 1.04974 1.22942 0.96286 1.08561 0.97262 0.93491 0.92027 0.91007 0.91719 0.90078 0.91758 0.91857 0.90668 0.92734 0.92277 0.92751 0.92179 0.92356 0.92534 0.92438 0.91911 0.77262 0.97074 0.86818 0.92696 0.90303 0.91511 0.91440 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 10.44 59.85 0.63 1.77 16 2 N -0.64 -10.82 2.76 -187.35 -0.52 -11.34 16 3 C 0.14 2.06 5.03 -4.04 -0.02 2.04 16 4 C -0.10 -1.43 2.39 -90.62 -0.22 -1.64 16 5 C -0.10 -1.77 4.05 -26.73 -0.11 -1.88 16 6 C -0.12 -1.77 5.92 -26.73 -0.16 -1.93 16 7 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 8 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 9 C -0.11 -1.26 5.21 -26.73 -0.14 -1.40 16 10 C 0.70 14.97 6.68 -86.92 -0.58 14.39 16 11 O -0.60 -14.65 14.54 5.28 0.08 -14.57 16 12 N -0.70 -15.29 4.90 -65.22 -0.32 -15.61 16 13 C 0.18 4.39 4.62 -4.04 -0.02 4.37 16 14 C 0.04 0.91 2.04 -155.66 -0.32 0.59 16 15 C -0.50 -12.66 8.43 -34.44 -0.29 -12.95 16 16 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 17 C 0.08 1.97 5.31 -17.82 -0.09 1.87 16 18 N -0.86 -22.83 10.11 55.43 0.56 -22.27 16 19 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 23 C -0.20 -4.39 9.96 -26.70 -0.27 -4.65 16 24 C -0.21 -4.45 9.92 -26.70 -0.26 -4.72 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.07 1.05 5.93 -51.93 -0.31 0.75 16 28 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 29 H 0.08 1.32 7.36 -51.93 -0.38 0.94 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 32 H 0.07 1.60 6.16 -51.93 -0.32 1.28 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.39 8.15 5.68 -40.82 -0.23 7.92 16 42 H 0.01 0.27 8.09 -51.93 -0.42 -0.15 16 43 H 0.11 3.13 5.90 -51.93 -0.31 2.82 16 44 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 45 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -28.01 368.51 -10.53 -38.54 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -8.69 Total: 11.63 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -2.17 Total: -7.14 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.28 Total: -49.22 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.08 Total: -14.57 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.01 -10.53 -38.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431051663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.624 kcal (2) G-P(sol) polarization free energy of solvation -28.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds