Wall clock time and date at job start Fri Apr 10 2020 20:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99840 * 2 1 4 4 C 1.52998 * 109.47110 * 269.99709 * 3 2 1 5 5 C 1.53001 * 109.46989 * 295.00155 * 4 3 2 6 6 C 1.52998 * 109.46989 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47091 * 60.00003 * 6 5 4 8 8 C 1.53001 * 109.47201 * 299.99867 * 7 6 5 9 9 C 1.52998 * 109.46989 * 60.00070 * 8 7 6 10 10 C 1.34773 * 119.99749 * 179.97438 * 2 1 3 11 11 O 1.21593 * 119.99567 * 185.17294 * 10 2 1 12 12 N 1.34776 * 120.00213 * 5.17846 * 10 2 1 13 13 C 1.46500 * 119.99608 * 185.02637 * 12 10 2 14 14 C 1.53004 * 109.46878 * 184.98996 * 13 12 10 15 15 C 1.50705 * 115.54939 * 54.06308 * 14 13 12 16 16 H 1.08005 * 119.99666 * 215.59403 * 15 14 13 17 17 C 1.37877 * 119.99820 * 35.31220 * 15 14 13 18 18 N 1.31510 * 120.00303 * 355.90304 * 17 15 14 19 19 Si 1.86800 * 119.99592 * 175.90480 * 17 15 14 20 20 H 1.48501 * 109.47558 * 60.00187 * 19 17 15 21 21 H 1.48507 * 109.46901 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47288 * 299.99767 * 19 17 15 23 23 C 1.52996 * 117.50077 * 199.73031 * 14 13 12 24 24 C 1.52992 * 117.49995 * 268.39139 * 14 13 12 25 25 H 1.09001 * 109.47901 * 274.16583 * 1 2 3 26 26 H 1.09005 * 109.47262 * 34.16920 * 1 2 3 27 27 H 1.09002 * 109.47203 * 154.16429 * 1 2 3 28 28 H 1.09001 * 109.47010 * 29.99741 * 3 2 1 29 29 H 1.09002 * 109.47148 * 149.99934 * 3 2 1 30 30 H 1.09001 * 109.46780 * 55.00295 * 4 3 2 31 31 H 1.08996 * 109.47031 * 299.99716 * 5 4 3 32 32 H 1.08993 * 109.47093 * 59.99920 * 5 4 3 33 33 H 1.09006 * 109.47446 * 300.00336 * 6 5 4 34 34 H 1.09002 * 109.47591 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.46926 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.47417 * 59.99985 * 7 6 5 37 37 H 1.09001 * 109.47474 * 300.00355 * 8 7 6 38 38 H 1.08993 * 109.47093 * 180.02562 * 8 7 6 39 39 H 1.09002 * 109.47591 * 180.02562 * 9 8 7 40 40 H 1.08993 * 109.47385 * 59.99917 * 9 8 7 41 41 H 0.96997 * 119.99751 * 5.02853 * 12 10 2 42 42 H 1.08995 * 109.47283 * 64.99710 * 13 12 10 43 43 H 1.09004 * 109.47526 * 304.98898 * 13 12 10 44 44 H 0.96996 * 119.99933 * 184.99381 * 18 17 15 45 45 H 1.08996 * 117.50321 * 215.00066 * 23 14 13 46 46 H 1.09000 * 117.49580 * 0.02562 * 23 14 13 47 47 H 1.08999 * 117.49936 * 359.97438 * 24 14 13 48 48 H 1.09003 * 117.49884 * 144.97027 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.3823 0.7061 -2.1264 6 6 3.6369 1.1474 -3.5691 7 6 4.2901 2.5310 -3.5715 8 6 3.3603 3.5352 -2.8876 9 6 3.1057 3.0939 -1.4449 10 6 2.1388 -1.1672 0.0005 11 8 3.3510 -1.1693 0.0955 12 7 1.4690 -2.3321 -0.1043 13 6 2.1887 -3.6033 0.0068 14 6 1.2264 -4.7600 -0.2705 15 6 0.4749 -4.6820 -1.5745 16 1 -0.5437 -5.0363 -1.6328 17 6 1.0858 -4.1529 -2.6916 18 7 2.2945 -3.6428 -2.6006 19 14 0.1964 -4.1606 -4.3343 20 1 -1.0669 -3.3889 -4.2169 21 1 1.0621 -3.5394 -5.3687 22 1 -0.1127 -5.5600 -4.7233 23 6 1.6273 -6.1484 0.2317 24 6 0.5016 -5.3784 0.9266 25 1 -0.3635 0.0746 1.0249 26 1 -0.3634 0.8503 -0.5772 27 1 -0.3634 -0.9250 -0.4479 28 1 1.6083 2.0284 0.5138 29 1 3.1499 1.1384 0.5138 30 1 1.5061 1.7549 -1.9815 31 1 4.3286 0.6617 -1.5874 32 1 2.9168 -0.2794 -2.1251 33 1 2.6903 1.1917 -4.1080 34 1 4.2997 0.4323 -4.0563 35 1 4.4710 2.8456 -4.5994 36 1 5.2366 2.4869 -3.0327 37 1 2.4137 3.5794 -3.4263 38 1 3.8255 4.5209 -2.8897 39 1 2.4429 3.8091 -0.9577 40 1 4.0522 3.0498 -0.9061 41 1 0.5106 -2.3287 -0.2533 42 1 2.5965 -3.7032 1.0126 43 1 3.0018 -3.6252 -0.7189 44 1 2.6955 -3.2058 -3.3682 45 1 1.3476 -7.0055 -0.3809 46 1 2.5766 -6.2377 0.7600 47 1 0.7107 -4.9615 1.9117 48 1 -0.5189 -5.7285 0.7711 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431051663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:16 Heat of formation + Delta-G solvation = -35.028631 kcal Electronic energy + Delta-G solvation = -25580.065344 eV Core-core repulsion = 22248.486133 eV Total energy + Delta-G solvation = -3331.579211 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.14567 -39.37271 -38.42946 -36.25315 -34.75516 -34.09404 -32.37434 -31.55169 -28.06400 -27.85695 -27.34903 -25.58471 -23.39573 -22.96439 -22.30074 -21.08409 -20.60931 -20.40387 -19.03382 -17.88706 -17.08465 -16.95567 -16.65875 -15.82073 -15.72113 -15.26606 -15.09169 -15.01856 -14.85462 -14.59582 -14.28133 -14.03692 -13.52973 -13.45110 -13.30713 -13.08246 -12.94922 -12.93240 -12.86683 -12.56333 -12.44539 -12.30779 -12.01667 -11.99626 -11.81068 -11.49684 -11.36909 -11.09919 -10.94031 -10.85847 -10.79250 -10.63265 -10.12989 -9.72160 -9.15023 -7.88541 -6.16158 1.40319 1.44227 1.49849 2.00576 2.41296 2.53738 3.03459 3.41618 3.69091 3.76322 3.87959 3.91172 4.21694 4.29158 4.32224 4.38423 4.48069 4.52241 4.56696 4.61115 4.65692 4.70919 4.74260 4.79409 4.80166 4.85251 4.91598 4.93575 4.97231 5.07465 5.14401 5.19303 5.27001 5.29296 5.31939 5.34751 5.44152 5.52625 5.54780 5.62278 5.63896 5.83939 6.02513 6.07665 6.24261 6.41245 6.84668 7.40146 7.48553 7.96935 8.94496 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.015731 B = 0.005388 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.458042 B = 5195.550063 C = 6119.840974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.639 5.639 3 C 0.138 3.862 4 C -0.094 4.094 5 C -0.096 4.096 6 C -0.118 4.118 7 C -0.114 4.114 8 C -0.113 4.113 9 C -0.105 4.105 10 C 0.699 3.301 11 O -0.641 6.641 12 N -0.700 5.700 13 C 0.197 3.803 14 C 0.009 3.991 15 C -0.504 4.504 16 H 0.057 0.943 17 C 0.038 3.962 18 N -0.880 5.880 19 Si 0.943 3.057 20 H -0.266 1.266 21 H -0.296 1.296 22 H -0.276 1.276 23 C -0.201 4.201 24 C -0.185 4.185 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.107 0.893 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.024 0.976 33 H 0.055 0.945 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.397 0.603 42 H 0.006 0.994 43 H 0.074 0.926 44 H 0.252 0.748 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.577 14.802 2.132 15.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.376 5.376 3 C 0.015 3.985 4 C -0.114 4.114 5 C -0.134 4.134 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.150 4.150 9 C -0.143 4.143 10 C 0.400 3.600 11 O -0.523 6.523 12 N -0.353 5.353 13 C 0.072 3.928 14 C 0.009 3.991 15 C -0.542 4.542 16 H 0.076 0.924 17 C -0.165 4.165 18 N -0.516 5.516 19 Si 0.770 3.230 20 H -0.191 1.191 21 H -0.222 1.222 22 H -0.201 1.201 23 C -0.240 4.240 24 C -0.222 4.222 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.125 0.875 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.233 0.767 42 H 0.024 0.976 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.560 14.805 2.095 15.170 hybrid contribution -0.485 -0.827 -1.123 1.476 sum -3.045 13.978 0.972 14.338 Atomic orbital electron populations 1.21829 0.78459 1.03257 1.02690 1.47036 1.07206 1.04432 1.78940 1.21443 0.96983 0.83577 0.96461 1.21536 0.98513 0.95434 0.95939 1.21332 0.98753 0.97723 0.95587 1.21518 1.00162 0.97612 0.96250 1.21519 0.98725 0.93949 1.00994 1.21499 0.99634 0.98480 0.95386 1.21494 1.00819 0.94578 0.97413 1.16043 0.84873 0.81294 0.77771 1.90785 1.13912 1.86970 1.60663 1.44787 1.11276 1.03978 1.75233 1.20500 0.95423 0.81130 0.95758 1.19275 0.97005 0.90029 0.92819 1.20600 0.98618 1.42196 0.92750 0.92445 1.25556 0.95106 0.94681 1.01107 1.70082 1.14879 1.36340 1.30279 0.85854 0.78635 0.78203 0.80343 1.19138 1.22231 1.20143 1.22953 0.98028 0.97896 1.05099 1.22927 0.96300 1.06250 0.96703 0.91127 0.89090 0.92501 0.87486 0.92415 0.91261 0.94420 0.95692 0.92644 0.94167 0.91209 0.92557 0.91748 0.90139 0.89503 0.92364 0.76688 0.97551 0.90808 0.93797 0.90471 0.90797 0.89853 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.00 10.44 127.77 1.33 3.34 16 2 N -0.64 -21.18 2.76 -864.91 -2.39 -23.57 16 3 C 0.14 3.84 5.03 86.38 0.43 4.28 16 4 C -0.09 -2.53 2.39 -10.79 -0.03 -2.55 16 5 C -0.10 -3.43 4.05 30.59 0.12 -3.30 16 6 C -0.12 -3.60 5.92 30.60 0.18 -3.42 16 7 C -0.11 -2.64 5.92 30.60 0.18 -2.45 16 8 C -0.11 -2.10 5.92 30.59 0.18 -1.91 16 9 C -0.11 -2.09 5.21 30.60 0.16 -1.93 16 10 C 0.70 30.71 6.68 179.06 1.20 31.91 16 11 O -0.64 -33.14 14.54 -4.01 -0.06 -33.20 16 12 N -0.70 -31.36 4.90 -478.53 -2.34 -33.71 16 13 C 0.20 9.78 4.62 86.38 0.40 10.18 16 14 C 0.01 0.45 2.04 -52.93 -0.11 0.34 16 15 C -0.50 -25.62 8.43 25.60 0.22 -25.40 16 16 H 0.06 2.87 7.82 -2.91 -0.02 2.85 16 17 C 0.04 1.97 5.31 84.66 0.45 2.42 16 18 N -0.88 -48.87 10.11 21.45 0.22 -48.65 16 19 Si 0.94 41.95 29.54 68.60 2.03 43.97 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 23 C -0.20 -8.76 9.96 30.62 0.30 -8.45 16 24 C -0.18 -7.42 9.92 30.61 0.30 -7.11 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.09 1.75 8.10 -2.38 -0.02 1.73 16 27 H 0.06 1.60 5.93 -2.39 -0.01 1.59 16 28 H 0.11 2.10 8.07 -2.39 -0.02 2.08 16 29 H 0.06 1.89 7.36 -2.39 -0.02 1.88 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.04 1.49 8.09 -2.39 -0.02 1.47 16 32 H 0.02 1.12 6.16 -2.39 -0.01 1.10 16 33 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.40 16.67 5.68 -92.71 -0.53 16.15 16 42 H 0.01 0.32 8.09 -2.39 -0.02 0.30 16 43 H 0.07 4.31 5.90 -2.38 -0.01 4.29 16 44 H 0.25 14.10 8.32 -92.71 -0.77 13.33 16 45 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 46 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 47 H 0.08 3.08 8.14 -2.39 -0.02 3.07 16 48 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -64.13 368.51 3.17 -60.95 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: 0.39 Total: 38.28 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 5.33 Total: -4.08 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -4.52 Total: -105.93 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.06 Total: -33.20 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -64.13 3.17 -60.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431051663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.925 kcal (2) G-P(sol) polarization free energy of solvation -64.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds