Wall clock time and date at job start Fri Apr 10 2020 20:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00345 * 2 1 4 4 H 1.08998 * 112.88478 * 341.34691 * 3 2 1 5 5 C 1.53946 * 113.66148 * 112.81378 * 3 2 1 6 6 C 1.53958 * 87.29515 * 89.74069 * 5 3 2 7 7 H 1.09000 * 113.65887 * 270.26008 * 6 5 3 8 8 N 1.46900 * 113.66062 * 139.20387 * 6 5 3 9 9 C 1.46900 * 110.99994 * 107.81343 * 8 6 5 10 10 C 1.53038 * 109.46013 * 275.06629 * 9 8 6 11 11 C 1.53195 * 109.30927 * 178.61650 * 10 9 8 12 12 N 1.46924 * 108.77864 * 54.63390 * 11 10 9 13 13 C 1.36938 * 120.62896 * 126.41182 * 12 11 10 14 14 H 1.08001 * 119.99598 * 207.66196 * 13 12 11 15 15 C 1.38817 * 120.00261 * 27.66463 * 13 12 11 16 16 N 1.31615 * 119.99638 * 17.36319 * 15 13 12 17 17 Si 1.86794 * 120.00157 * 197.36754 * 15 13 12 18 18 H 1.48505 * 109.47293 * 89.99637 * 17 15 13 19 19 H 1.48500 * 109.47155 * 209.99843 * 17 15 13 20 20 H 1.48510 * 109.47220 * 329.99917 * 17 15 13 21 21 C 1.46926 * 118.74025 * 306.38960 * 12 11 10 22 22 C 1.53039 * 109.46052 * 154.99610 * 9 8 6 23 23 C 1.52904 * 86.77949 * 24.73264 * 6 5 3 24 24 C 1.52913 * 121.13399 * 209.38453 * 23 6 5 25 25 C 1.53948 * 86.78308 * 209.38061 * 24 23 6 26 26 C 1.53074 * 121.17709 * 100.75430 * 23 6 5 27 27 H 1.08996 * 109.47488 * 59.99773 * 1 2 3 28 28 H 1.08997 * 109.47551 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46835 * 300.00043 * 1 2 3 30 30 H 1.09003 * 113.58083 * 204.34260 * 5 3 2 31 31 H 1.08996 * 113.58759 * 335.05908 * 5 3 2 32 32 H 1.00898 * 111.00339 * 343.85720 * 8 6 5 33 33 H 1.08998 * 109.46041 * 35.02777 * 9 8 6 34 34 H 1.09007 * 109.49459 * 298.56139 * 10 9 8 35 35 H 1.08992 * 109.49637 * 58.66250 * 10 9 8 36 36 H 1.08998 * 109.58762 * 294.83946 * 11 10 9 37 37 H 1.09008 * 109.58079 * 174.42317 * 11 10 9 38 38 H 0.97003 * 119.99561 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.58157 * 293.82419 * 21 12 11 40 40 H 1.08999 * 109.58627 * 173.39569 * 21 12 11 41 41 H 1.09008 * 109.50140 * 301.33631 * 22 9 8 42 42 H 1.08997 * 109.49876 * 61.43382 * 22 9 8 43 43 H 1.09003 * 113.66292 * 94.90574 * 24 23 6 44 44 H 1.08998 * 113.66180 * 323.85436 * 24 23 6 45 45 H 1.09009 * 113.57498 * 139.33121 * 25 24 23 46 46 H 1.08999 * 113.58387 * 270.04885 * 25 24 23 47 47 H 1.09002 * 113.66333 * 36.13692 * 26 23 6 48 48 H 1.09002 * 113.70962 * 265.03634 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3136 2.0796 -0.3212 5 6 2.7611 1.6474 1.2997 6 6 4.0190 1.0483 0.6447 7 1 4.1401 -0.0196 0.8259 8 7 5.2432 1.8165 0.9076 9 6 6.1209 1.1035 1.8453 10 6 5.6934 1.4154 3.2813 11 6 6.5887 0.6432 4.2554 12 7 7.9926 0.9614 3.9612 13 6 8.8269 1.4144 4.9480 14 1 9.6647 2.0484 4.6979 15 6 8.5958 1.0588 6.2698 16 7 7.8126 0.0387 6.5495 17 14 9.3964 2.0281 7.6514 18 1 8.5034 3.1438 8.0554 19 1 9.6280 1.1336 8.8140 20 1 10.6943 2.5775 7.1833 21 6 8.4844 0.7839 2.5881 22 6 7.5678 1.5545 1.6326 23 6 3.3679 1.3726 -0.7003 24 6 3.6591 0.5306 -1.9431 25 6 3.4009 1.8080 -2.7626 26 6 3.7820 2.6080 -1.5037 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 2.8367 2.7179 1.4908 31 1 2.4104 1.0870 2.1664 32 1 5.0242 2.7405 1.2487 33 1 6.0454 0.0305 1.6690 34 1 5.7924 2.4851 3.4661 35 1 4.6555 1.1153 3.4251 36 1 6.4234 -0.4272 4.1336 37 1 6.3541 0.9371 5.2786 38 1 7.6514 -0.2100 7.4731 39 1 8.4736 -0.2752 2.3302 40 1 9.5006 1.1706 2.5111 41 1 7.8641 1.3534 0.6031 42 1 7.6491 2.6228 1.8330 43 1 2.9269 -0.2575 -2.1189 44 1 4.6879 0.1752 -1.9994 45 1 4.0961 1.9421 -3.5915 46 1 2.3596 1.9325 -3.0598 47 1 4.8455 2.8374 -1.4364 48 1 3.1478 3.4772 -1.3291 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834574708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:02 Heat of formation + Delta-G solvation = 20.911309 kcal Electronic energy + Delta-G solvation = -24962.172100 eV Core-core repulsion = 21633.018627 eV Total energy + Delta-G solvation = -3329.153473 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.82961 -37.83061 -37.11878 -35.19365 -33.33216 -31.45047 -29.77647 -28.84982 -26.86454 -25.71315 -24.92322 -24.52010 -23.29435 -21.98813 -21.26276 -20.93873 -19.24074 -18.20258 -16.83302 -16.55417 -15.85080 -15.75221 -15.18838 -14.81071 -14.58120 -14.41061 -13.76982 -13.48414 -13.43652 -13.16513 -12.77962 -12.67143 -12.44752 -12.35024 -12.25842 -11.89839 -11.73685 -11.60382 -11.28721 -11.04334 -10.95481 -10.70438 -10.62875 -10.60424 -10.32153 -10.20673 -10.14616 -9.97663 -9.87178 -9.61242 -9.47867 -9.30599 -8.45565 -7.90797 -6.62573 -5.74906 -3.16621 3.39705 3.41367 3.46513 3.47874 4.37687 4.45475 4.52909 4.54083 4.70008 4.78403 4.84560 5.03422 5.10865 5.15844 5.23596 5.37169 5.42099 5.44113 5.44424 5.52276 5.64456 5.65217 5.77671 5.85311 5.85684 5.95445 5.96209 6.03656 6.04552 6.15247 6.21754 6.40384 6.40712 6.49859 6.59408 6.62945 6.69709 6.74796 6.88898 7.06760 7.08186 7.39564 7.51226 7.67625 7.76621 7.83542 8.49291 9.25661 9.89763 10.46718 11.33434 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.025366 B = 0.003478 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.586135 B = 8047.889919 C = 8683.291734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.363 6.363 3 C 0.087 3.913 4 H 0.070 0.930 5 C -0.184 4.184 6 C 0.094 3.906 7 H 0.097 0.903 8 N -0.674 5.674 9 C 0.096 3.904 10 C -0.165 4.165 11 C 0.175 3.825 12 N -0.593 5.593 13 C -0.250 4.250 14 H 0.065 0.935 15 C 0.001 3.999 16 N -0.904 5.904 17 Si 0.901 3.099 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.279 1.279 21 C 0.145 3.855 22 C -0.117 4.117 23 C -0.097 4.097 24 C -0.117 4.117 25 C -0.144 4.144 26 C -0.101 4.101 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.338 0.662 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.015 0.985 37 H 0.085 0.915 38 H 0.253 0.747 39 H 0.016 0.984 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.100 0.900 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.834 3.341 -16.174 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.028 3.972 4 H 0.088 0.912 5 C -0.224 4.224 6 C -0.016 4.016 7 H 0.115 0.885 8 N -0.301 5.301 9 C -0.013 4.013 10 C -0.205 4.205 11 C 0.048 3.952 12 N -0.316 5.316 13 C -0.380 4.380 14 H 0.083 0.917 15 C -0.198 4.198 16 N -0.548 5.548 17 Si 0.732 3.268 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.018 3.982 22 C -0.157 4.157 23 C -0.098 4.098 24 C -0.155 4.155 25 C -0.181 4.181 26 C -0.138 4.138 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.156 0.844 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.034 0.966 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.118 0.882 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.391 2.867 -16.570 21.496 hybrid contribution -0.503 0.769 1.755 1.981 sum -13.893 3.635 -14.815 20.633 Atomic orbital electron populations 1.22795 0.81214 1.02688 0.99801 1.87886 1.19316 1.26455 1.94499 1.22677 0.93252 0.84824 0.96409 0.91162 1.24182 0.99014 1.01383 0.97788 1.22718 0.87083 0.97955 0.93893 0.88467 1.60541 1.15337 1.05418 1.48841 1.21565 0.92802 0.97253 0.89695 1.22856 0.99057 1.01348 0.97276 1.20690 0.82234 0.94664 0.97586 1.44071 1.06367 1.77043 1.04085 1.19219 1.09176 1.23002 0.86594 0.91689 1.25028 0.99968 0.96668 0.98114 1.70044 1.41230 1.25614 1.17946 0.86298 0.79081 0.79440 0.82020 1.21545 1.21806 1.20430 1.20927 0.95600 0.96008 0.85688 1.21978 0.94371 1.00561 0.98771 1.22932 0.94021 0.98779 0.94051 1.22546 1.01869 0.96302 0.94733 1.22861 1.00805 0.97426 0.97004 1.22517 1.02491 0.94694 0.94093 0.94197 0.89625 0.94086 0.89423 0.90872 0.84361 0.91462 0.92807 0.93725 0.96645 0.89670 0.93725 0.96642 0.92824 0.92714 0.92645 0.91425 0.89799 0.91714 0.91066 0.88153 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.85 101.05 1.10 1.36 16 2 O -0.36 -4.29 10.20 -35.23 -0.36 -4.65 16 3 C 0.09 0.95 4.17 -26.29 -0.11 0.84 16 4 H 0.07 0.67 7.87 -51.93 -0.41 0.27 16 5 C -0.18 -2.19 7.52 -25.75 -0.19 -2.38 16 6 C 0.09 1.24 3.82 -67.26 -0.26 0.98 16 7 H 0.10 1.47 7.48 -51.93 -0.39 1.08 16 8 N -0.67 -9.46 5.58 -99.23 -0.55 -10.01 16 9 C 0.10 1.64 2.42 -67.67 -0.16 1.48 16 10 C -0.16 -3.16 5.33 -26.61 -0.14 -3.30 16 11 C 0.17 4.25 5.31 -3.71 -0.02 4.23 16 12 N -0.59 -15.12 2.99 -172.31 -0.52 -15.64 16 13 C -0.25 -6.99 9.59 -15.06 -0.14 -7.13 16 14 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 15 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 16 N -0.90 -26.63 11.19 55.49 0.62 -26.01 16 17 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.14 3.11 6.52 -3.71 -0.02 3.09 16 22 C -0.12 -2.10 5.69 -26.61 -0.15 -2.25 16 23 C -0.10 -1.09 0.99 -154.63 -0.15 -1.24 16 24 C -0.12 -1.29 7.71 -26.28 -0.20 -1.50 16 25 C -0.14 -1.36 8.08 -25.75 -0.21 -1.56 16 26 C -0.10 -1.02 7.45 -26.20 -0.20 -1.21 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.97 7.82 -51.93 -0.41 0.56 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.34 4.61 7.94 -39.29 -0.31 4.30 16 33 H 0.07 1.23 7.47 -51.93 -0.39 0.84 16 34 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 35 H 0.04 0.80 8.03 -51.93 -0.42 0.38 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 2.32 6.04 -51.92 -0.31 2.01 16 38 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 41 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.07 0.77 7.83 -51.93 -0.41 0.36 16 44 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.10 1.12 7.77 -51.93 -0.40 0.71 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -29.39 369.42 -10.12 -39.51 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -8.90 Total: 2.98 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -0.95 Total: -8.67 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.45 Total: -51.67 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.36 Total: -4.65 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.39 -10.12 -39.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834574708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.420 kcal (2) G-P(sol) polarization free energy of solvation -29.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds