Wall clock time and date at job start Fri Apr 10 2020 20:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00345 * 2 1 4 4 H 1.08998 * 112.88478 * 341.34691 * 3 2 1 5 5 C 1.53946 * 113.66148 * 112.81378 * 3 2 1 6 6 C 1.53958 * 87.29515 * 89.74069 * 5 3 2 7 7 H 1.09000 * 113.65887 * 270.26008 * 6 5 3 8 8 N 1.46900 * 113.66062 * 139.20387 * 6 5 3 9 9 C 1.46900 * 110.99994 * 107.81343 * 8 6 5 10 10 C 1.53038 * 109.46013 * 275.06629 * 9 8 6 11 11 C 1.53195 * 109.30927 * 178.61650 * 10 9 8 12 12 N 1.46924 * 108.77864 * 54.63390 * 11 10 9 13 13 C 1.36938 * 120.62896 * 126.41182 * 12 11 10 14 14 H 1.08001 * 119.99598 * 207.66196 * 13 12 11 15 15 C 1.38817 * 120.00261 * 27.66463 * 13 12 11 16 16 N 1.31615 * 119.99638 * 17.36319 * 15 13 12 17 17 Si 1.86794 * 120.00157 * 197.36754 * 15 13 12 18 18 H 1.48505 * 109.47293 * 89.99637 * 17 15 13 19 19 H 1.48500 * 109.47155 * 209.99843 * 17 15 13 20 20 H 1.48510 * 109.47220 * 329.99917 * 17 15 13 21 21 C 1.46926 * 118.74025 * 306.38960 * 12 11 10 22 22 C 1.53039 * 109.46052 * 154.99610 * 9 8 6 23 23 C 1.52904 * 86.77949 * 24.73264 * 6 5 3 24 24 C 1.52913 * 121.13399 * 209.38453 * 23 6 5 25 25 C 1.53948 * 86.78308 * 209.38061 * 24 23 6 26 26 C 1.53074 * 121.17709 * 100.75430 * 23 6 5 27 27 H 1.08996 * 109.47488 * 59.99773 * 1 2 3 28 28 H 1.08997 * 109.47551 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46835 * 300.00043 * 1 2 3 30 30 H 1.09003 * 113.58083 * 204.34260 * 5 3 2 31 31 H 1.08996 * 113.58759 * 335.05908 * 5 3 2 32 32 H 1.00898 * 111.00339 * 343.85720 * 8 6 5 33 33 H 1.08998 * 109.46041 * 35.02777 * 9 8 6 34 34 H 1.09007 * 109.49459 * 298.56139 * 10 9 8 35 35 H 1.08992 * 109.49637 * 58.66250 * 10 9 8 36 36 H 1.08998 * 109.58762 * 294.83946 * 11 10 9 37 37 H 1.09008 * 109.58079 * 174.42317 * 11 10 9 38 38 H 0.97003 * 119.99561 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.58157 * 293.82419 * 21 12 11 40 40 H 1.08999 * 109.58627 * 173.39569 * 21 12 11 41 41 H 1.09008 * 109.50140 * 301.33631 * 22 9 8 42 42 H 1.08997 * 109.49876 * 61.43382 * 22 9 8 43 43 H 1.09003 * 113.66292 * 94.90574 * 24 23 6 44 44 H 1.08998 * 113.66180 * 323.85436 * 24 23 6 45 45 H 1.09009 * 113.57498 * 139.33121 * 25 24 23 46 46 H 1.08999 * 113.58387 * 270.04885 * 25 24 23 47 47 H 1.09002 * 113.66333 * 36.13692 * 26 23 6 48 48 H 1.09002 * 113.70962 * 265.03634 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3136 2.0796 -0.3212 5 6 2.7611 1.6474 1.2997 6 6 4.0190 1.0483 0.6447 7 1 4.1401 -0.0196 0.8259 8 7 5.2432 1.8165 0.9076 9 6 6.1209 1.1035 1.8453 10 6 5.6934 1.4154 3.2813 11 6 6.5887 0.6432 4.2554 12 7 7.9926 0.9614 3.9612 13 6 8.8269 1.4144 4.9480 14 1 9.6647 2.0484 4.6979 15 6 8.5958 1.0588 6.2698 16 7 7.8126 0.0387 6.5495 17 14 9.3964 2.0281 7.6514 18 1 8.5034 3.1438 8.0554 19 1 9.6280 1.1336 8.8140 20 1 10.6943 2.5775 7.1833 21 6 8.4844 0.7839 2.5881 22 6 7.5678 1.5545 1.6326 23 6 3.3679 1.3726 -0.7003 24 6 3.6591 0.5306 -1.9431 25 6 3.4009 1.8080 -2.7626 26 6 3.7820 2.6080 -1.5037 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 2.8367 2.7179 1.4908 31 1 2.4104 1.0870 2.1664 32 1 5.0242 2.7405 1.2487 33 1 6.0454 0.0305 1.6690 34 1 5.7924 2.4851 3.4661 35 1 4.6555 1.1153 3.4251 36 1 6.4234 -0.4272 4.1336 37 1 6.3541 0.9371 5.2786 38 1 7.6514 -0.2100 7.4731 39 1 8.4736 -0.2752 2.3302 40 1 9.5006 1.1706 2.5111 41 1 7.8641 1.3534 0.6031 42 1 7.6491 2.6228 1.8330 43 1 2.9269 -0.2575 -2.1189 44 1 4.6879 0.1752 -1.9994 45 1 4.0961 1.9421 -3.5915 46 1 2.3596 1.9325 -3.0598 47 1 4.8455 2.8374 -1.4364 48 1 3.1478 3.4772 -1.3291 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834574708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:02 Heat of formation + Delta-G solvation = 3.728205 kcal Electronic energy + Delta-G solvation = -24962.917215 eV Core-core repulsion = 21633.018627 eV Total energy + Delta-G solvation = -3329.898588 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.74648 -39.41906 -37.94790 -36.56017 -34.78451 -33.16212 -31.52480 -30.46658 -27.62818 -26.71715 -26.46943 -25.46001 -24.50905 -23.70828 -22.88957 -21.87183 -20.81716 -19.22842 -18.67914 -17.48329 -16.99469 -16.71413 -16.55252 -16.25082 -15.62550 -15.56385 -15.33034 -15.17185 -14.80385 -14.68364 -14.18482 -13.95570 -13.79868 -13.34251 -13.16773 -13.14035 -13.00419 -12.77642 -12.61102 -12.57096 -12.46868 -12.33424 -12.07387 -11.96132 -11.85782 -11.78144 -11.49299 -11.36266 -11.15343 -10.95851 -10.69124 -10.56750 -10.27889 -9.16416 -8.69072 -7.87983 -5.33694 1.45919 1.47034 1.56392 2.50609 2.64508 3.18940 3.29489 3.57469 3.65224 3.70148 3.79094 3.94370 3.99653 4.03552 4.10906 4.25350 4.29901 4.43585 4.52714 4.53808 4.56529 4.56716 4.65578 4.71628 4.82633 4.84950 4.86544 4.89917 4.93794 5.00672 5.06991 5.12019 5.13412 5.18614 5.24432 5.25579 5.29600 5.38075 5.49547 5.57252 5.63134 5.68843 5.71828 6.21812 6.33143 6.37960 6.58612 7.13578 7.85342 8.37491 9.18120 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.025366 B = 0.003478 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.586135 B = 8047.889919 C = 8683.291734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.389 6.389 3 C 0.093 3.907 4 H 0.092 0.908 5 C -0.182 4.182 6 C 0.085 3.915 7 H 0.072 0.928 8 N -0.659 5.659 9 C 0.109 3.891 10 C -0.146 4.146 11 C 0.182 3.818 12 N -0.610 5.610 13 C -0.263 4.263 14 H 0.068 0.932 15 C -0.053 4.053 16 N -0.937 5.937 17 Si 0.968 3.032 18 H -0.285 1.285 19 H -0.295 1.295 20 H -0.267 1.267 21 C 0.140 3.860 22 C -0.102 4.102 23 C -0.094 4.094 24 C -0.123 4.123 25 C -0.132 4.132 26 C -0.096 4.096 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.345 0.655 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.055 0.945 36 H -0.011 1.011 37 H 0.051 0.949 38 H 0.249 0.751 39 H 0.009 0.991 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.726 5.234 -17.855 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.308 6.308 3 C 0.035 3.965 4 H 0.110 0.890 5 C -0.221 4.221 6 C -0.026 4.026 7 H 0.091 0.909 8 N -0.287 5.287 9 C -0.001 4.001 10 C -0.187 4.187 11 C 0.055 3.945 12 N -0.334 5.334 13 C -0.393 4.393 14 H 0.086 0.914 15 C -0.248 4.248 16 N -0.583 5.583 17 Si 0.797 3.203 18 H -0.212 1.212 19 H -0.222 1.222 20 H -0.192 1.192 21 C 0.014 3.986 22 C -0.142 4.142 23 C -0.095 4.095 24 C -0.160 4.160 25 C -0.170 4.170 26 C -0.133 4.133 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.164 0.836 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.007 0.993 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.102 0.898 47 H 0.110 0.890 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.291 4.772 -18.291 23.697 hybrid contribution -0.236 0.090 2.251 2.265 sum -14.527 4.861 -16.039 22.179 Atomic orbital electron populations 1.22978 0.79557 1.03681 1.00805 1.87860 1.21251 1.27114 1.94555 1.22649 0.93449 0.85148 0.95301 0.89033 1.24176 0.98303 1.01814 0.97812 1.22733 0.87141 0.96590 0.96102 0.90948 1.60521 1.15670 1.05418 1.47123 1.21311 0.93194 0.96833 0.88807 1.22634 0.98400 1.00248 0.97392 1.20481 0.83097 0.93724 0.97178 1.44341 1.06672 1.77168 1.05219 1.19567 1.09422 1.22803 0.87532 0.91448 1.25819 1.00992 0.97577 1.00381 1.70207 1.42915 1.27212 1.17999 0.85246 0.78576 0.77817 0.78705 1.21171 1.22194 1.19164 1.21086 0.96681 0.96243 0.84579 1.21787 0.93856 0.99744 0.98778 1.22955 0.93870 0.99727 0.92949 1.22549 1.01063 0.96997 0.95430 1.22822 1.01738 0.95628 0.96792 1.22485 1.02249 0.94679 0.93883 0.92605 0.88802 0.93579 0.88059 0.92305 0.83599 0.92799 0.92804 0.92651 0.99308 0.93085 0.94183 0.97313 0.92604 0.90454 0.92601 0.91999 0.90920 0.90977 0.89832 0.89002 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.85 113.37 1.23 1.61 16 2 O -0.39 -8.66 10.20 -148.98 -1.52 -10.18 16 3 C 0.09 1.84 4.17 30.88 0.13 1.97 16 4 H 0.09 1.43 7.87 -2.39 -0.02 1.42 16 5 C -0.18 -4.03 7.52 31.23 0.23 -3.79 16 6 C 0.08 2.15 3.82 45.21 0.17 2.32 16 7 H 0.07 2.22 7.48 -2.39 -0.02 2.20 16 8 N -0.66 -17.48 5.58 -467.85 -2.61 -20.09 16 9 C 0.11 3.64 2.42 44.94 0.11 3.75 16 10 C -0.15 -5.62 5.33 30.67 0.16 -5.45 16 11 C 0.18 9.13 5.31 86.36 0.46 9.59 16 12 N -0.61 -31.71 2.99 -699.08 -2.09 -33.81 16 13 C -0.26 -14.86 9.59 84.03 0.81 -14.05 16 14 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 15 C -0.05 -3.00 4.91 84.86 0.42 -2.59 16 16 N -0.94 -56.94 11.19 21.65 0.24 -56.70 16 17 Si 0.97 45.66 29.59 68.60 2.03 47.69 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 C 0.14 6.02 6.52 86.36 0.56 6.59 16 22 C -0.10 -3.54 5.69 30.67 0.17 -3.36 16 23 C -0.09 -1.93 0.99 -52.26 -0.05 -1.98 16 24 C -0.12 -2.53 7.71 30.89 0.24 -2.30 16 25 C -0.13 -2.13 8.08 31.23 0.25 -1.87 16 26 C -0.10 -1.65 7.45 30.94 0.23 -1.42 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.10 1.97 7.82 -2.39 -0.02 1.95 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.34 8.58 7.94 -89.70 -0.71 7.87 16 33 H 0.05 1.98 7.47 -2.39 -0.02 1.96 16 34 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.05 1.99 8.03 -2.39 -0.02 1.97 16 36 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 37 H 0.05 2.90 6.04 -2.38 -0.01 2.88 16 38 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 40 H 0.06 2.34 7.93 -2.39 -0.02 2.32 16 41 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.06 1.33 7.83 -2.39 -0.02 1.32 16 44 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 47 H 0.09 1.79 7.77 -2.39 -0.02 1.77 16 48 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -64.40 369.42 1.37 -63.03 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.20 Total: 21.05 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 5.13 Total: -11.00 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -4.46 Total: -110.59 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -1.52 Total: -10.18 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -64.40 1.37 -63.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834574708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.755 kcal (2) G-P(sol) polarization free energy of solvation -64.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds