Wall clock time and date at job start Fri Apr 10 2020 20:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47468 * 2 1 4 4 C 1.52999 * 109.46908 * 120.00456 * 2 1 3 5 5 N 1.46496 * 109.47119 * 175.00090 * 4 2 1 6 6 C 1.36935 * 120.00221 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00176 * 0.02562 * 6 5 4 8 8 C 1.38813 * 120.00382 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00240 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99684 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46845 * 90.00337 * 10 8 6 12 12 H 1.48503 * 109.47399 * 209.99827 * 10 8 6 13 13 H 1.48498 * 109.47295 * 330.00433 * 10 8 6 14 14 N 1.46501 * 109.46943 * 240.00303 * 2 1 3 15 15 C 1.46501 * 119.99905 * 299.99688 * 14 2 1 16 16 C 1.34776 * 120.00175 * 120.00199 * 14 2 1 17 17 O 1.21278 * 119.99743 * 0.02562 * 16 14 2 18 18 C 1.50705 * 119.99910 * 179.97438 * 16 14 2 19 19 H 1.08995 * 109.47522 * 300.00301 * 18 16 14 20 20 C 1.52943 * 109.46972 * 60.01150 * 18 16 14 21 21 C 1.52950 * 109.81829 * 182.97278 * 20 18 16 22 22 C 1.53175 * 109.45502 * 297.02158 * 21 20 18 23 23 C 1.53150 * 108.88249 * 56.56526 * 22 21 20 24 24 C 1.52848 * 117.67676 * 91.48186 * 23 22 21 25 25 C 1.52800 * 117.75442 * 160.36425 * 23 22 21 26 26 C 1.53148 * 115.00660 * 306.05901 * 23 22 21 27 27 H 1.08996 * 109.47286 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46820 * 300.00158 * 1 2 3 29 29 H 1.08998 * 109.46861 * 59.99891 * 1 2 3 30 30 H 1.08998 * 109.47493 * 54.99861 * 4 2 1 31 31 H 1.09009 * 109.46622 * 294.99651 * 4 2 1 32 32 H 0.97000 * 120.00132 * 359.97438 * 5 4 2 33 33 H 0.97000 * 119.99717 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.47155 * 90.00187 * 15 14 2 35 35 H 1.08992 * 109.47449 * 210.00363 * 15 14 2 36 36 H 1.09000 * 109.47492 * 330.00754 * 15 14 2 37 37 H 1.08998 * 109.42093 * 303.08529 * 20 18 16 38 38 H 1.09001 * 109.41866 * 62.87834 * 20 18 16 39 39 H 1.09003 * 109.47761 * 177.01890 * 21 20 18 40 40 H 1.09006 * 109.47379 * 57.01864 * 21 20 18 41 41 H 1.09006 * 109.56625 * 296.74872 * 22 21 20 42 42 H 1.08995 * 109.57195 * 176.38725 * 22 21 20 43 43 H 1.08991 * 117.50856 * 215.22763 * 24 23 22 44 44 H 1.09002 * 117.50162 * 0.28009 * 24 23 22 45 45 H 1.09004 * 117.50507 * 359.85367 * 25 23 22 46 46 H 1.08999 * 117.50803 * 144.87074 * 25 23 22 47 47 H 1.09000 * 109.57013 * 294.12323 * 26 23 22 48 48 H 1.08998 * 109.67214 * 173.81898 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1838 -1.4381 2.2072 7 1 3.6468 -1.8434 3.0520 8 6 5.5672 -1.5382 2.1514 9 7 6.2244 -2.1265 3.1283 10 14 6.4960 -0.8392 0.6891 11 1 6.8577 0.5749 0.9626 12 1 7.7316 -1.6312 0.4628 13 1 5.6370 -0.9054 -0.5205 14 7 2.0183 -0.6906 -1.1962 15 6 1.6644 -2.0931 -1.4281 16 6 2.7932 -0.0356 -2.0834 17 8 3.0866 1.1254 -1.8911 18 6 3.2960 -0.7462 -3.3136 19 1 3.9016 -1.6024 -3.0167 20 6 2.1066 -1.2270 -4.1464 21 6 2.6069 -2.0136 -5.3590 22 6 3.4355 -1.0916 -6.2587 23 6 4.5787 -0.4917 -5.4349 24 6 5.9119 -1.2393 -5.4207 25 6 5.7789 0.0762 -6.1911 26 6 4.1467 0.2166 -4.1476 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6054 -1.7199 1.2951 31 1 1.7516 -0.1583 2.1370 32 1 3.9824 -0.4629 0.4316 33 1 7.1911 -2.1961 3.0894 34 1 0.7375 -2.1444 -1.9994 35 1 2.4628 -2.5818 -1.9864 36 1 1.5294 -2.5969 -0.4709 37 1 1.4719 -1.8685 -3.5351 38 1 1.5303 -0.3664 -4.4857 39 1 1.7548 -2.3984 -5.9193 40 1 3.2259 -2.8453 -5.0224 41 1 2.8029 -0.2911 -6.6425 42 1 3.8462 -1.6650 -7.0897 43 1 6.4874 -1.2247 -4.4952 44 1 5.9796 -2.1586 -6.0023 45 1 5.7594 0.0223 -7.2796 46 1 6.2669 0.9565 -5.7727 47 1 3.5595 1.1005 -4.3967 48 1 5.0277 0.5122 -3.5780 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753690663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:53 Heat of formation + Delta-G solvation = -8.932410 kcal Electronic energy + Delta-G solvation = -25564.323659 eV Core-core repulsion = 22233.876065 eV Total energy + Delta-G solvation = -3330.447594 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51919 -38.84659 -36.49998 -35.10835 -33.99334 -32.06025 -31.04744 -30.34473 -27.65070 -26.74167 -25.93246 -24.10444 -22.63653 -22.14691 -21.71435 -20.59747 -18.90714 -18.72638 -17.53286 -16.91248 -16.02912 -15.54561 -15.20350 -15.07963 -14.61708 -14.24431 -14.01270 -13.72342 -13.68840 -13.13155 -12.87721 -12.72908 -12.68919 -12.45852 -12.32113 -12.27684 -12.07250 -11.89775 -11.75440 -11.60456 -11.18757 -11.05721 -11.02500 -10.92673 -10.78147 -10.58637 -10.52986 -10.09853 -10.02176 -9.67730 -9.57910 -9.32737 -8.88060 -8.35910 -7.20315 -5.75709 -3.10047 2.89212 3.20385 3.39888 3.46178 3.49343 3.65958 4.39401 4.51282 4.61992 4.63936 4.73836 4.92692 4.97836 5.00567 5.10671 5.16358 5.23956 5.27296 5.33703 5.43887 5.46906 5.51690 5.55194 5.56140 5.61416 5.71210 5.76973 5.79256 5.83340 5.85136 5.85504 5.94956 6.01873 6.03627 6.04435 6.06661 6.12749 6.23485 6.29533 6.30994 6.43555 6.63379 6.89767 7.64554 8.00660 8.42696 8.45613 9.23755 9.96789 10.17439 11.42647 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.005986 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.708800 B = 4676.248106 C = 6050.566691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.120 3.880 3 H 0.100 0.900 4 C 0.148 3.852 5 N -0.752 5.752 6 C -0.242 4.242 7 H 0.090 0.910 8 C 0.006 3.994 9 N -0.934 5.934 10 Si 0.882 3.118 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.279 1.279 14 N -0.598 5.598 15 C 0.078 3.922 16 C 0.519 3.481 17 O -0.545 6.545 18 C -0.102 4.102 19 H 0.097 0.903 20 C -0.121 4.121 21 C -0.114 4.114 22 C -0.080 4.080 23 C -0.123 4.123 24 C -0.176 4.176 25 C -0.175 4.175 26 C -0.060 4.060 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.029 0.971 31 H 0.037 0.963 32 H 0.363 0.637 33 H 0.259 0.741 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.074 0.926 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.479 0.171 -19.919 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.017 3.983 3 H 0.118 0.882 4 C 0.020 3.980 5 N -0.398 5.398 6 C -0.372 4.372 7 H 0.108 0.892 8 C -0.189 4.189 9 N -0.582 5.582 10 Si 0.712 3.288 11 H -0.211 1.211 12 H -0.218 1.218 13 H -0.205 1.205 14 N -0.331 5.331 15 C -0.065 4.065 16 C 0.307 3.693 17 O -0.422 6.422 18 C -0.124 4.124 19 H 0.115 0.885 20 C -0.158 4.158 21 C -0.151 4.151 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.213 4.213 25 C -0.212 4.212 26 C -0.097 4.097 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.196 0.804 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.092 0.908 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.285 0.661 -19.584 22.130 hybrid contribution 0.935 0.311 -0.845 1.298 sum -9.350 0.972 -20.429 22.488 Atomic orbital electron populations 1.22026 0.94856 1.02169 1.02097 1.21452 0.93669 0.98508 0.84675 0.88241 1.20981 0.85727 0.97361 0.93922 1.42649 1.01307 1.71340 1.24462 1.19050 0.89857 1.29339 0.98951 0.89228 1.24624 0.96156 1.00608 0.97544 1.69701 1.07267 1.48697 1.32569 0.86583 0.79651 0.79023 0.83504 1.21061 1.21772 1.20496 1.47733 1.50640 1.12277 1.22442 1.21883 0.99874 0.82012 1.02717 1.20624 0.77650 0.86872 0.84178 1.90665 1.57454 1.17240 1.76834 1.21278 0.98102 0.99786 0.93188 0.88464 1.21752 0.96652 1.00675 0.96724 1.21501 0.99385 0.98164 0.96082 1.21143 0.95518 0.98430 0.96650 1.21498 0.89684 1.03002 0.98080 1.23053 0.99957 0.95682 1.02592 1.22967 1.01928 0.97669 0.98612 1.20915 0.99674 0.96712 0.92441 0.92286 0.91321 0.92668 0.95359 0.94563 0.80377 0.93111 0.92786 0.91098 0.90263 0.90203 0.91639 0.91653 0.91591 0.91551 0.91920 0.88760 0.88904 0.88966 0.88828 0.90757 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.19 37.16 0.34 -1.52 16 2 C 0.12 1.97 2.80 -67.93 -0.19 1.78 16 3 H 0.10 1.86 6.90 -51.93 -0.36 1.50 16 4 C 0.15 2.89 5.50 -4.04 -0.02 2.86 16 5 N -0.75 -18.59 5.24 -59.91 -0.31 -18.91 16 6 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 7 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 8 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 9 N -0.93 -29.89 13.97 55.49 0.78 -29.11 16 10 Si 0.88 23.46 27.73 -169.99 -4.71 18.74 16 11 H -0.28 -7.69 7.11 56.52 0.40 -7.29 16 12 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 13 H -0.28 -7.12 6.52 56.52 0.37 -6.75 16 14 N -0.60 -9.40 2.24 -173.93 -0.39 -9.79 16 15 C 0.08 0.97 7.86 59.85 0.47 1.44 16 16 C 0.52 8.89 6.78 -10.98 -0.07 8.82 16 17 O -0.54 -11.27 15.29 5.56 0.08 -11.18 16 18 C -0.10 -1.40 1.73 -91.71 -0.16 -1.56 16 19 H 0.10 1.39 7.40 -51.93 -0.38 1.00 16 20 C -0.12 -1.24 4.76 -26.79 -0.13 -1.36 16 21 C -0.11 -0.99 5.93 -26.67 -0.16 -1.14 16 22 C -0.08 -0.72 5.67 -26.56 -0.15 -0.87 16 23 C -0.12 -1.35 1.97 -154.53 -0.31 -1.65 16 24 C -0.18 -1.91 9.93 -26.79 -0.27 -2.18 16 25 C -0.17 -1.78 9.99 -26.82 -0.27 -2.05 16 26 C -0.06 -0.81 4.27 -26.56 -0.11 -0.93 16 27 H 0.06 0.64 7.67 -51.93 -0.40 0.25 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.53 6.88 -51.93 -0.36 0.18 16 31 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.36 9.23 4.93 -40.82 -0.20 9.03 16 33 H 0.26 7.90 8.31 -40.82 -0.34 7.57 16 34 H 0.05 0.51 6.90 -51.93 -0.36 0.16 16 35 H 0.07 0.85 6.04 -51.93 -0.31 0.53 16 36 H 0.08 1.05 6.53 -51.93 -0.34 0.71 16 37 H 0.08 0.74 4.47 -51.93 -0.23 0.51 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.07 1.04 8.02 -51.93 -0.42 0.63 16 48 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 365.41 15.07 5.51 5.51 Total: -1.00 -34.00 365.41 -8.77 -42.77 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -8.44 Total: 7.42 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -1.28 Total: -5.44 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 0.07 Total: -57.81 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -4.71 Total: 18.74 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.00 -8.77 -42.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753690663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.834 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds