Wall clock time and date at job start Fri Apr 10 2020 20:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47194 * 2 1 4 4 C 1.52998 * 109.46982 * 119.99871 * 2 1 3 5 5 N 1.46507 * 109.46637 * 174.99732 * 4 2 1 6 6 C 1.46502 * 119.99873 * 90.00341 * 5 4 2 7 7 C 1.36936 * 119.99830 * 270.00049 * 5 4 2 8 8 H 1.07999 * 120.00440 * 21.93098 * 7 5 4 9 9 C 1.38814 * 120.00041 * 201.92395 * 7 5 4 10 10 N 1.31627 * 119.99706 * 14.19918 * 9 7 5 11 11 Si 1.86794 * 120.00286 * 194.20096 * 9 7 5 12 12 H 1.48496 * 109.47160 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47209 * 120.00299 * 11 9 7 14 14 H 1.48511 * 109.47115 * 239.99866 * 11 9 7 15 15 N 1.46503 * 109.46757 * 240.00186 * 2 1 3 16 16 C 1.34776 * 119.99985 * 84.72331 * 15 2 1 17 17 O 1.21284 * 120.00164 * 0.27521 * 16 15 2 18 18 C 1.50698 * 120.00118 * 180.27468 * 16 15 2 19 19 H 1.08996 * 108.69620 * 61.78231 * 18 16 15 20 20 C 1.51573 * 108.73606 * 180.02562 * 18 16 15 21 21 C 1.52691 * 111.47013 * 188.20519 * 20 18 16 22 22 C 1.53681 * 108.94352 * 268.93891 * 21 20 18 23 23 H 1.08999 * 115.93598 * 288.81898 * 22 21 20 24 24 C 1.52998 * 117.08336 * 140.75594 * 22 21 20 25 25 C 1.52997 * 60.31346 * 254.83715 * 24 22 21 26 26 H 1.08997 * 118.09159 * 252.05408 * 25 24 22 27 27 C 1.53678 * 117.70745 * 104.88320 * 25 24 22 28 28 C 1.51051 * 109.81106 * 219.65054 * 27 25 24 29 29 H 1.08998 * 109.47411 * 59.99467 * 1 2 3 30 30 H 1.08989 * 109.47181 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46388 * 299.99890 * 1 2 3 32 32 H 1.08994 * 109.47584 * 294.99584 * 4 2 1 33 33 H 1.08997 * 109.47277 * 55.00313 * 4 2 1 34 34 H 1.08996 * 109.46974 * 95.14673 * 6 5 4 35 35 H 1.09002 * 109.46718 * 215.14001 * 6 5 4 36 36 H 1.08996 * 109.46770 * 335.14062 * 6 5 4 37 37 H 0.96997 * 119.99530 * 179.97438 * 10 9 7 38 38 H 0.96994 * 119.99716 * 264.99992 * 15 2 1 39 39 H 1.08996 * 109.08170 * 308.71826 * 20 18 16 40 40 H 1.09009 * 109.07934 * 67.69203 * 20 18 16 41 41 H 1.08990 * 109.55798 * 28.77791 * 21 20 18 42 42 H 1.08999 * 109.55867 * 148.99501 * 21 20 18 43 43 H 1.09003 * 117.46673 * 2.41680 * 24 22 21 44 44 H 1.09007 * 117.46915 * 147.25337 * 24 22 21 45 45 H 1.08998 * 109.55320 * 338.88590 * 27 25 24 46 46 H 1.08997 * 109.55660 * 99.09522 * 27 25 24 47 47 H 1.09003 * 108.79401 * 330.23084 * 28 27 25 48 48 H 1.08998 * 109.15911 * 211.37065 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8264 1.1905 6 6 4.3344 0.2341 1.7611 7 6 4.0849 -1.9159 0.6022 8 1 3.5307 -2.5064 -0.1123 9 6 5.3903 -2.2613 0.9240 10 7 5.9701 -1.7310 1.9800 11 14 6.3241 -3.4787 -0.1415 12 1 5.4556 -3.9253 -1.2601 13 1 7.5400 -2.8257 -0.6897 14 1 6.7195 -4.6524 0.6781 15 7 2.0183 -0.6906 -1.1962 16 6 2.1417 -0.0196 -2.3586 17 8 1.8533 1.1572 -2.4130 18 6 2.6380 -0.7315 -3.5906 19 1 1.9388 -1.5301 -3.8382 20 6 2.6778 0.2554 -4.7403 21 6 2.9783 -0.4417 -6.0651 22 6 4.4983 -0.4482 -6.2919 23 1 4.9488 0.5153 -6.5304 24 6 5.1068 -1.7142 -6.8983 25 6 5.2945 -1.4220 -5.4083 26 1 6.2827 -1.1149 -5.0660 27 6 4.4613 -2.2402 -4.4092 28 6 3.9887 -1.3483 -3.2854 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8901 32 1 1.7518 -0.1583 2.1370 33 1 1.6055 -1.7198 1.2952 34 1 4.6184 -0.0349 2.7785 35 1 5.2314 0.3569 1.1541 36 1 3.7743 1.1690 1.7753 37 1 6.8821 -1.9726 2.2051 38 1 2.2490 -1.6317 -1.1527 39 1 1.7129 0.7573 -4.8127 40 1 3.4509 0.9987 -4.5453 41 1 2.6104 -1.4670 -6.0296 42 1 2.4887 0.0937 -6.8785 43 1 4.4243 -2.5193 -7.1707 44 1 5.9742 -1.5941 -7.5475 45 1 3.5894 -2.6550 -4.9148 46 1 5.0685 -3.0502 -4.0050 47 1 4.7188 -0.5524 -3.1381 48 1 3.9136 -1.9354 -2.3702 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754319968.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:08 Heat of formation + Delta-G solvation = -11.360194 kcal Electronic energy + Delta-G solvation = -25648.695751 eV Core-core repulsion = 22318.142881 eV Total energy + Delta-G solvation = -3330.552871 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.09265 -38.57520 -36.40035 -34.31224 -34.00428 -31.93358 -31.20420 -30.05127 -27.07508 -26.18033 -25.62939 -23.99735 -22.35926 -21.62744 -21.16030 -19.98019 -19.45360 -18.82547 -17.14824 -16.37371 -16.12681 -15.61244 -15.05243 -14.86332 -14.23150 -13.95766 -13.80993 -13.40396 -13.14226 -12.95072 -12.91552 -12.76700 -12.19825 -12.07451 -11.96350 -11.86944 -11.80971 -11.59798 -11.15285 -11.05600 -10.89777 -10.83108 -10.58174 -10.50722 -10.43388 -10.33919 -10.29812 -10.00659 -9.90490 -9.74259 -9.65064 -9.04587 -8.58623 -8.35223 -6.77038 -5.76056 -3.21572 3.20697 3.32638 3.37268 3.41797 3.76667 3.83757 4.44016 4.55204 4.77829 4.86603 5.06210 5.13973 5.17840 5.28213 5.33386 5.41699 5.46863 5.54136 5.57539 5.64395 5.72585 5.73997 5.78693 5.85380 5.94075 5.95891 6.08876 6.14032 6.16832 6.22378 6.23982 6.28011 6.35649 6.42509 6.48134 6.49966 6.56351 6.65374 6.76722 6.84834 7.20523 7.37712 7.65982 7.75675 8.20771 8.34030 8.85859 9.18609 9.82919 10.33308 11.28393 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.006641 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.034240 B = 4215.289308 C = 6004.635248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.076 0.924 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.247 4.247 8 H 0.065 0.935 9 C 0.004 3.996 10 N -0.903 5.903 11 Si 0.894 3.106 12 H -0.274 1.274 13 H -0.289 1.289 14 H -0.292 1.292 15 N -0.696 5.696 16 C 0.515 3.485 17 O -0.561 6.561 18 C -0.097 4.097 19 H 0.084 0.916 20 C -0.095 4.095 21 C -0.087 4.087 22 C -0.152 4.152 23 H 0.102 0.898 24 C -0.175 4.175 25 C -0.149 4.149 26 H 0.103 0.897 27 C -0.087 4.087 28 C -0.113 4.113 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.030 0.970 35 H 0.039 0.961 36 H -0.003 1.003 37 H 0.252 0.748 38 H 0.402 0.598 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.297 -0.178 -12.827 14.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.094 0.906 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.019 3.981 7 C -0.377 4.377 8 H 0.082 0.918 9 C -0.195 4.195 10 N -0.548 5.548 11 Si 0.724 3.276 12 H -0.199 1.199 13 H -0.216 1.216 14 H -0.219 1.219 15 N -0.346 5.346 16 C 0.301 3.699 17 O -0.440 6.440 18 C -0.119 4.119 19 H 0.102 0.898 20 C -0.133 4.133 21 C -0.125 4.125 22 C -0.170 4.170 23 H 0.121 0.879 24 C -0.212 4.212 25 C -0.167 4.167 26 H 0.121 0.879 27 C -0.124 4.124 28 C -0.151 4.151 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.015 0.985 37 H 0.062 0.938 38 H 0.238 0.762 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.319 0.628 -12.735 14.230 hybrid contribution 0.923 -1.073 -0.448 1.485 sum -5.396 -0.445 -13.183 14.251 Atomic orbital electron populations 1.22120 0.96705 1.01319 1.01548 1.21841 0.92090 0.98290 0.86908 0.90631 1.21053 0.86108 0.98186 0.93325 1.43824 0.98857 1.21074 1.68308 1.20765 0.92834 0.86257 0.98214 1.18999 0.96632 1.04898 1.17180 0.91757 1.24965 0.98817 0.98898 0.96816 1.70081 1.13559 1.46225 1.24909 0.86355 0.80364 0.80782 0.80079 1.19930 1.21610 1.21893 1.45979 1.65466 1.14366 1.08819 1.20579 0.77221 0.87216 0.84921 1.90617 1.51618 1.16208 1.85574 1.20832 0.98551 0.98679 0.93805 0.89760 1.20960 1.02801 0.97414 0.92128 1.21281 0.93131 1.00909 0.97151 1.22716 0.95207 0.94341 1.04710 0.87940 1.23062 1.02862 0.99375 0.95874 1.22731 1.00149 1.02452 0.91357 0.87856 1.20952 0.98699 0.97399 0.95361 1.20926 0.95220 0.99933 0.98972 0.92974 0.92965 0.92214 0.93132 0.93083 0.95160 0.94178 0.98461 0.93809 0.76159 0.91346 0.91339 0.91711 0.91706 0.89042 0.89241 0.91831 0.91317 0.91187 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.48 37.16 0.35 -1.98 16 2 C 0.12 2.08 2.88 -67.93 -0.20 1.88 16 3 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 4 C 0.14 2.73 5.30 -4.04 -0.02 2.71 16 5 N -0.60 -14.17 2.82 -181.12 -0.51 -14.68 16 6 C 0.16 4.01 8.98 59.85 0.54 4.55 16 7 C -0.25 -6.19 8.85 -15.06 -0.13 -6.32 16 8 H 0.06 1.51 6.08 -52.49 -0.32 1.19 16 9 C 0.00 0.10 5.08 -17.43 -0.09 0.01 16 10 N -0.90 -25.63 10.71 55.49 0.59 -25.04 16 11 Si 0.89 20.71 29.58 -169.99 -5.03 15.68 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 N -0.70 -12.28 4.28 -53.80 -0.23 -12.51 16 16 C 0.51 9.19 7.10 -10.99 -0.08 9.11 16 17 O -0.56 -11.70 15.41 5.55 0.09 -11.62 16 18 C -0.10 -1.41 2.03 -93.21 -0.19 -1.60 16 19 H 0.08 1.07 7.86 -51.93 -0.41 0.66 16 20 C -0.10 -1.29 4.26 -27.61 -0.12 -1.41 16 21 C -0.09 -0.96 5.42 -26.54 -0.14 -1.11 16 22 C -0.15 -1.70 5.68 -89.89 -0.51 -2.21 16 23 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 24 C -0.17 -1.80 9.82 -26.73 -0.26 -2.06 16 25 C -0.15 -1.82 5.68 -89.89 -0.51 -2.33 16 26 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 27 C -0.09 -1.13 5.37 -27.36 -0.15 -1.28 16 28 C -0.11 -1.72 4.76 -28.43 -0.14 -1.85 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.71 8.14 -51.94 -0.42 0.28 16 31 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 32 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 34 H 0.03 0.80 7.36 -51.93 -0.38 0.41 16 35 H 0.04 1.06 7.30 -51.93 -0.38 0.69 16 36 H 0.00 -0.07 8.03 -51.93 -0.42 -0.49 16 37 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.40 6.96 5.53 -40.82 -0.23 6.73 16 39 H 0.07 0.96 7.73 -51.93 -0.40 0.56 16 40 H 0.07 1.04 7.79 -51.92 -0.40 0.63 16 41 H 0.06 0.68 6.19 -51.93 -0.32 0.36 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 45 H 0.06 0.74 6.12 -51.93 -0.32 0.42 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.07 1.19 7.79 -51.93 -0.40 0.79 16 48 H 0.08 1.38 6.83 -51.93 -0.35 1.03 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -29.29 364.69 -9.74 -39.04 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -8.51 Total: 7.51 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -1.64 Total: -3.88 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.15 Total: -52.23 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.29 -9.74 -39.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319968.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.676 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds