Wall clock time and date at job start Fri Apr 10 2020 20:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46951 * 2 1 4 4 C 1.53001 * 109.47133 * 240.00346 * 2 1 3 5 5 N 1.46501 * 109.47021 * 185.00067 * 4 2 1 6 6 C 1.46502 * 119.99884 * 269.99960 * 5 4 2 7 7 C 1.36939 * 120.00132 * 89.99254 * 5 4 2 8 8 H 1.08002 * 119.99732 * 22.34565 * 7 5 4 9 9 C 1.38815 * 120.00265 * 202.33739 * 7 5 4 10 10 N 1.31615 * 119.99584 * 11.36128 * 9 7 5 11 11 Si 1.86798 * 119.99860 * 191.36223 * 9 7 5 12 12 H 1.48504 * 109.47178 * 90.00432 * 11 9 7 13 13 H 1.48505 * 109.46807 * 209.99596 * 11 9 7 14 14 H 1.48497 * 109.47579 * 330.00022 * 11 9 7 15 15 N 1.46498 * 109.47213 * 120.00018 * 2 1 3 16 16 C 1.34785 * 119.99680 * 275.00395 * 15 2 1 17 17 O 1.21275 * 119.99983 * 359.97438 * 16 15 2 18 18 C 1.50698 * 119.99273 * 179.97438 * 16 15 2 19 19 H 1.08996 * 108.69978 * 61.78842 * 18 16 15 20 20 C 1.51576 * 108.73606 * 303.68411 * 18 16 15 21 21 C 1.52688 * 111.47200 * 171.80118 * 20 18 16 22 22 C 1.53678 * 108.95124 * 91.04686 * 21 20 18 23 23 H 1.08995 * 116.32381 * 141.88170 * 22 21 20 24 24 C 1.52998 * 117.08698 * 354.40506 * 22 21 20 25 25 C 1.52999 * 60.31534 * 254.83348 * 24 22 21 26 26 H 1.08996 * 118.71079 * 252.31438 * 25 24 22 27 27 C 1.53677 * 117.08359 * 105.16805 * 25 24 22 28 28 C 1.51583 * 108.72809 * 179.97438 * 18 16 15 29 29 H 1.08995 * 109.47038 * 300.00197 * 1 2 3 30 30 H 1.09002 * 109.46776 * 60.00082 * 1 2 3 31 31 H 1.08992 * 109.46913 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46845 * 304.99245 * 4 2 1 33 33 H 1.08993 * 109.47351 * 65.00074 * 4 2 1 34 34 H 1.08997 * 109.47112 * 94.22598 * 6 5 4 35 35 H 1.09004 * 109.46748 * 214.22799 * 6 5 4 36 36 H 1.09001 * 109.47156 * 334.22218 * 6 5 4 37 37 H 0.97005 * 119.99517 * 179.97438 * 10 9 7 38 38 H 0.96996 * 120.00236 * 94.99907 * 15 2 1 39 39 H 1.09000 * 109.08182 * 292.31101 * 20 18 16 40 40 H 1.08997 * 109.08003 * 51.28586 * 20 18 16 41 41 H 1.09007 * 109.55722 * 331.20993 * 21 20 18 42 42 H 1.09000 * 109.65100 * 210.94113 * 21 20 18 43 43 H 1.09005 * 117.46812 * 147.25365 * 24 22 21 44 44 H 1.08997 * 117.46449 * 2.41522 * 24 22 21 45 45 H 1.08996 * 109.56059 * 245.75412 * 27 25 24 46 46 H 1.08996 * 109.56207 * 125.43109 * 27 25 24 47 47 H 1.09000 * 109.08245 * 308.71984 * 28 18 16 48 48 H 1.09006 * 109.07991 * 67.69869 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.3344 0.2342 -1.7612 7 6 4.0850 -1.9158 -0.6022 8 1 3.5339 -2.8398 -0.5086 9 6 5.3864 -1.8325 -0.1263 10 7 5.9795 -0.6612 -0.0338 11 14 6.2956 -3.3828 0.3830 12 1 7.0231 -3.9369 -0.7871 13 1 7.2651 -3.0569 1.4596 14 1 5.3216 -4.3869 0.8812 15 7 2.0184 -0.6906 1.1961 16 6 2.1470 -0.0182 2.3572 17 8 1.8589 1.1586 2.4115 18 6 2.6488 -0.7288 3.5877 19 1 3.6598 -1.0881 3.3959 20 6 1.7542 -1.9218 3.8598 21 6 2.3198 -2.8024 4.9716 22 6 1.7508 -2.3318 6.3193 23 1 1.5059 -3.1123 7.0396 24 6 0.8919 -1.0657 6.3090 25 6 2.3212 -1.0072 6.8516 26 1 2.4694 -0.9064 7.9267 27 6 3.3807 -0.3386 5.9616 28 6 2.6938 0.2595 4.7362 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6055 -1.7197 -1.2951 33 1 1.7517 -0.1582 -2.1369 34 1 4.6023 0.9456 -0.9801 35 1 5.2404 -0.2027 -2.1812 36 1 3.7811 0.7485 -2.5470 37 1 6.8888 -0.6030 0.2992 38 1 2.2491 -1.6317 1.1526 39 1 0.7666 -1.5668 4.1542 40 1 1.6620 -2.5131 2.9489 41 1 3.4066 -2.7196 4.9854 42 1 2.0352 -3.8402 4.7977 43 1 0.0772 -1.0049 7.0307 44 1 0.7008 -0.5958 5.3442 45 1 4.1117 -1.0818 5.6434 46 1 3.8813 0.4516 6.5210 47 1 3.2393 1.1487 4.4200 48 1 1.6755 0.5434 5.0021 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754319969.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:10 Heat of formation + Delta-G solvation = 5.606460 kcal Electronic energy + Delta-G solvation = -25819.219936 eV Core-core repulsion = 22489.402795 eV Total energy + Delta-G solvation = -3329.817141 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.43917 -38.58424 -36.28178 -33.95060 -33.59913 -31.82885 -31.14970 -29.90528 -27.22795 -26.15694 -25.60144 -24.00793 -23.42873 -21.73752 -20.34711 -19.63583 -18.88960 -18.76792 -17.01271 -16.65622 -16.36609 -15.47298 -15.00459 -14.86189 -14.25357 -13.81656 -13.65698 -13.49586 -13.14525 -12.95492 -12.85682 -12.75574 -12.26218 -12.11951 -11.83283 -11.66802 -11.58234 -11.37993 -11.26164 -10.98763 -10.87737 -10.71399 -10.57025 -10.39381 -10.22441 -10.19218 -10.06343 -10.03427 -9.95944 -9.83451 -9.54395 -8.93924 -8.58535 -8.16104 -6.78594 -5.74954 -3.21303 3.31768 3.38592 3.40913 3.41999 3.77850 3.98208 4.44418 4.71179 4.83836 4.87215 5.05728 5.12988 5.14849 5.27971 5.34665 5.39089 5.52289 5.54521 5.67764 5.74540 5.78093 5.84723 5.89793 5.92644 6.00815 6.03065 6.08952 6.17923 6.19197 6.28044 6.28833 6.32080 6.35718 6.39495 6.48029 6.55298 6.57461 6.68400 6.76073 6.92720 7.37559 7.40127 7.69498 7.79349 8.35107 8.41679 9.06582 9.19452 9.83488 10.33847 11.29086 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.006079 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.097650 B = 4605.264623 C = 5726.972998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 H 0.074 0.926 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.255 4.255 8 H 0.066 0.934 9 C 0.007 3.993 10 N -0.899 5.899 11 Si 0.896 3.104 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.279 1.279 15 N -0.687 5.687 16 C 0.520 3.480 17 O -0.565 6.565 18 C -0.104 4.104 19 H 0.095 0.905 20 C -0.118 4.118 21 C -0.090 4.090 22 C -0.154 4.154 23 H 0.100 0.900 24 C -0.189 4.189 25 C -0.152 4.152 26 H 0.100 0.900 27 C -0.092 4.092 28 C -0.107 4.107 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.027 0.973 35 H 0.044 0.956 36 H -0.005 1.005 37 H 0.252 0.748 38 H 0.403 0.597 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.118 0.882 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.085 -2.736 9.038 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.093 0.907 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.385 4.385 8 H 0.084 0.916 9 C -0.192 4.192 10 N -0.543 5.543 11 Si 0.726 3.274 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.204 1.204 15 N -0.336 5.336 16 C 0.306 3.694 17 O -0.445 6.445 18 C -0.125 4.125 19 H 0.113 0.887 20 C -0.156 4.156 21 C -0.127 4.127 22 C -0.172 4.172 23 H 0.118 0.882 24 C -0.225 4.225 25 C -0.170 4.170 26 H 0.118 0.882 27 C -0.129 4.129 28 C -0.144 4.144 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.014 0.986 37 H 0.062 0.938 38 H 0.239 0.761 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.136 0.864 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.082 -1.866 9.067 12.969 hybrid contribution 0.863 -1.240 0.381 1.558 sum -8.219 -3.106 9.448 12.902 Atomic orbital electron populations 1.22149 0.97082 1.01114 1.01414 1.21775 0.91652 0.98357 0.87265 0.90736 1.21179 0.85956 0.97814 0.93677 1.43885 0.98905 1.22624 1.66642 1.20789 0.92937 0.90469 0.93822 1.19069 0.97155 0.89387 1.32873 0.91645 1.24994 0.98652 0.96103 0.99469 1.70077 1.13317 1.21513 1.49436 0.86397 0.80000 0.82954 0.78035 1.21564 1.21768 1.20430 1.45736 1.65055 1.14277 1.08546 1.20425 0.77120 0.87007 0.84852 1.90599 1.51896 1.16270 1.85722 1.20841 1.01590 0.96241 0.93836 0.88652 1.21456 0.99565 0.95469 0.99074 1.21193 1.00721 0.98780 0.92015 1.22757 1.04370 0.90987 0.99100 0.88189 1.23595 0.93500 1.01580 1.03786 1.22752 0.94957 1.00515 0.98800 0.88226 1.21230 0.96776 0.99504 0.95403 1.21240 1.02232 0.97939 0.93006 0.93029 0.92430 0.93111 0.93452 0.93121 0.95421 0.93737 0.98626 0.93775 0.76137 0.90649 0.91413 0.90893 0.91400 0.89571 0.86390 0.91106 0.91576 0.91054 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.48 37.16 0.35 -2.09 16 2 C 0.12 2.22 2.88 -67.93 -0.20 2.03 16 3 H 0.07 1.64 7.58 -51.93 -0.39 1.25 16 4 C 0.14 2.75 5.36 -4.04 -0.02 2.72 16 5 N -0.60 -14.21 2.82 -181.12 -0.51 -14.72 16 6 C 0.16 4.03 9.01 59.85 0.54 4.57 16 7 C -0.26 -6.42 8.02 -15.06 -0.12 -6.54 16 8 H 0.07 1.59 7.84 -52.49 -0.41 1.18 16 9 C 0.01 0.18 5.13 -17.43 -0.09 0.09 16 10 N -0.90 -25.29 10.58 55.49 0.59 -24.70 16 11 Si 0.90 20.74 29.57 -169.99 -5.03 15.71 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 N -0.69 -13.16 4.28 -53.80 -0.23 -13.39 16 16 C 0.52 10.22 7.10 -10.98 -0.08 10.14 16 17 O -0.57 -12.78 15.41 5.56 0.09 -12.70 16 18 C -0.10 -1.68 2.03 -93.21 -0.19 -1.87 16 19 H 0.10 1.70 7.89 -51.93 -0.41 1.29 16 20 C -0.12 -1.58 4.59 -27.61 -0.13 -1.71 16 21 C -0.09 -1.07 5.64 -26.54 -0.15 -1.22 16 22 C -0.15 -1.69 6.54 -89.89 -0.59 -2.28 16 23 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 24 C -0.19 -2.12 8.39 -26.73 -0.22 -2.34 16 25 C -0.15 -1.72 6.54 -89.89 -0.59 -2.31 16 26 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 27 C -0.09 -1.17 5.64 -26.54 -0.15 -1.32 16 28 C -0.11 -1.62 4.04 -27.61 -0.11 -1.73 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.86 8.03 -51.93 -0.42 0.45 16 33 H 0.05 0.90 7.86 -51.93 -0.41 0.49 16 34 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 35 H 0.04 1.17 7.19 -51.93 -0.37 0.79 16 36 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 37 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.40 7.62 6.43 -40.82 -0.26 7.36 16 39 H 0.08 0.98 5.34 -51.93 -0.28 0.70 16 40 H 0.07 0.91 6.98 -51.93 -0.36 0.55 16 41 H 0.07 0.92 6.29 -51.93 -0.33 0.59 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.12 1.49 3.34 -51.93 -0.17 1.32 16 45 H 0.07 0.92 6.29 -51.93 -0.33 0.60 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.07 1.23 7.73 -51.93 -0.40 0.83 16 48 H 0.08 1.13 5.34 -51.93 -0.28 0.86 16 LS Contribution 357.21 15.07 5.38 5.38 Total: -1.00 -29.32 357.21 -9.58 -38.90 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -8.13 Total: 9.37 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -1.74 Total: -3.85 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.15 Total: -52.81 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.32 -9.58 -38.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319969.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.507 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds