Wall clock time and date at job start Fri Apr 10 2020 20:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.47031 * 2 1 4 4 C 1.52996 * 109.46969 * 120.00652 * 2 1 3 5 5 N 1.46503 * 109.46730 * 174.99656 * 4 2 1 6 6 C 1.46506 * 120.00121 * 269.99999 * 5 4 2 7 7 C 1.36933 * 119.99834 * 89.99880 * 5 4 2 8 8 H 1.08000 * 120.00116 * 20.38494 * 7 5 4 9 9 C 1.38817 * 119.99868 * 200.37791 * 7 5 4 10 10 N 1.31616 * 119.99945 * 15.04190 * 9 7 5 11 11 Si 1.86797 * 120.00080 * 195.03527 * 9 7 5 12 12 H 1.48499 * 109.47197 * 85.00535 * 11 9 7 13 13 H 1.48500 * 109.47309 * 205.00306 * 11 9 7 14 14 H 1.48502 * 109.47287 * 325.00809 * 11 9 7 15 15 N 1.46499 * 109.46447 * 240.00434 * 2 1 3 16 16 C 1.34785 * 119.99984 * 85.00483 * 15 2 1 17 17 O 1.21282 * 119.99732 * 359.97438 * 16 15 2 18 18 C 1.50695 * 119.99938 * 179.97438 * 16 15 2 19 19 H 1.09005 * 108.59510 * 61.84159 * 18 16 15 20 20 C 1.51578 * 108.73201 * 303.68532 * 18 16 15 21 21 C 1.52692 * 111.47464 * 171.79768 * 20 18 16 22 22 C 1.53680 * 108.95145 * 91.04549 * 21 20 18 23 23 H 1.08998 * 116.32698 * 141.87922 * 22 21 20 24 24 C 1.53003 * 117.08183 * 354.40868 * 22 21 20 25 25 C 1.52996 * 60.31269 * 254.83426 * 24 22 21 26 26 H 1.09004 * 118.70914 * 252.31442 * 25 24 22 27 27 C 1.53680 * 117.08356 * 105.17493 * 25 24 22 28 28 C 1.51583 * 108.73300 * 179.97438 * 18 16 15 29 29 H 1.08998 * 109.47107 * 59.99072 * 1 2 3 30 30 H 1.09000 * 109.47377 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.46823 * 299.99526 * 1 2 3 32 32 H 1.08994 * 109.47233 * 294.99259 * 4 2 1 33 33 H 1.08995 * 109.47357 * 54.99872 * 4 2 1 34 34 H 1.08992 * 109.47067 * 95.18351 * 6 5 4 35 35 H 1.09000 * 109.46895 * 215.18276 * 6 5 4 36 36 H 1.09003 * 109.46383 * 335.18354 * 6 5 4 37 37 H 0.97007 * 120.00289 * 179.97438 * 10 9 7 38 38 H 0.96997 * 120.00264 * 264.99613 * 15 2 1 39 39 H 1.08997 * 109.08217 * 51.28685 * 20 18 16 40 40 H 1.09001 * 109.02768 * 292.27486 * 20 18 16 41 41 H 1.09000 * 109.55658 * 331.21070 * 21 20 18 42 42 H 1.08994 * 109.64994 * 210.93584 * 21 20 18 43 43 H 1.09001 * 117.46474 * 147.25472 * 24 22 21 44 44 H 1.09004 * 117.46703 * 2.41643 * 24 22 21 45 45 H 1.08998 * 109.55195 * 245.75562 * 27 25 24 46 46 H 1.08998 * 109.64646 * 125.48654 * 27 25 24 47 47 H 1.08996 * 109.07785 * 67.69214 * 28 18 16 48 48 H 1.08996 * 109.07725 * 308.71225 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1258 -1.9921 0.5608 7 6 4.2799 0.1646 1.7238 8 1 3.8672 0.8398 2.4587 9 6 5.6010 0.3013 1.3201 10 7 6.0232 -0.3080 0.2326 11 14 6.7795 1.3503 2.3202 12 1 7.3502 0.5379 3.4244 13 1 7.8763 1.8348 1.4441 14 1 6.0488 2.5122 2.8871 15 7 2.0182 -0.6905 -1.1963 16 6 2.1470 -0.0180 -2.3572 17 8 1.8582 1.1586 -2.4116 18 6 2.6497 -0.7282 -3.5876 19 1 1.9503 -1.5258 -3.8387 20 6 3.9993 -1.3442 -3.2768 21 6 4.4761 -2.2477 -4.4117 22 6 5.3152 -1.4150 -5.3937 23 1 6.1866 -1.9084 -5.8240 24 6 5.3925 0.0919 -5.1399 25 6 4.5223 -0.4408 -6.2799 26 1 4.8560 -0.2921 -7.3069 27 6 3.0013 -0.4357 -6.0602 28 6 2.6933 0.2598 -4.7364 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7518 -0.1585 2.1369 33 1 1.6054 -1.7199 1.2950 34 1 4.3637 -1.7604 -0.4773 35 1 5.0412 -2.2460 1.0953 36 1 3.4380 -2.8370 0.5962 37 1 6.9463 -0.2122 -0.0498 38 1 2.2489 -1.6317 -1.1528 39 1 3.9206 -1.9323 -2.3625 40 1 4.7275 -0.5472 -3.1261 41 1 3.6143 -2.6658 -4.9318 42 1 5.0848 -3.0557 -4.0059 43 1 6.3183 0.6002 -5.4094 44 1 4.8833 0.4799 -4.2577 45 1 2.6340 -1.4614 -6.0274 46 1 2.5151 0.1001 -6.8754 47 1 3.4646 1.0038 -4.5373 48 1 1.7281 0.7604 -4.8125 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754319970.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:13 Heat of formation + Delta-G solvation = 7.887380 kcal Electronic energy + Delta-G solvation = -25935.543280 eV Core-core repulsion = 22605.825047 eV Total energy + Delta-G solvation = -3329.718233 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.41584 -38.61508 -36.31839 -33.98295 -33.58222 -31.79135 -31.04672 -30.02550 -27.19705 -26.18108 -25.58270 -23.90741 -23.40881 -21.66951 -20.32171 -19.77886 -18.79210 -18.74980 -16.90986 -16.71831 -16.41981 -15.46256 -14.96533 -14.69355 -14.42645 -13.74377 -13.68018 -13.29959 -13.15083 -13.11662 -12.86773 -12.79636 -12.25401 -11.99704 -11.83311 -11.59046 -11.48941 -11.42338 -11.13289 -10.88713 -10.82899 -10.76593 -10.54348 -10.48932 -10.25190 -10.07949 -9.97450 -9.90252 -9.82301 -9.79858 -9.43338 -9.01480 -8.55542 -8.27184 -6.75277 -5.70854 -3.13062 3.30218 3.40550 3.47354 3.47806 3.86161 3.93689 4.52987 4.81239 4.92070 4.95293 5.13922 5.17997 5.22350 5.33577 5.37579 5.42073 5.49700 5.62430 5.67821 5.73817 5.84085 5.88409 5.93457 5.99388 6.03176 6.08308 6.11856 6.14057 6.27573 6.27948 6.35722 6.41542 6.44041 6.48552 6.50203 6.56579 6.61658 6.65584 6.84294 6.92666 7.26484 7.34342 7.68542 7.82897 8.23154 8.39389 8.93991 9.24711 9.87829 10.35052 11.34247 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.013452 B = 0.006023 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.985910 B = 4647.804616 C = 5847.687961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.084 0.916 4 C 0.143 3.857 5 N -0.596 5.596 6 C 0.158 3.842 7 C -0.255 4.255 8 H 0.068 0.932 9 C 0.005 3.995 10 N -0.901 5.901 11 Si 0.901 3.099 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.281 1.281 15 N -0.699 5.699 16 C 0.518 3.482 17 O -0.555 6.555 18 C -0.099 4.099 19 H 0.082 0.918 20 C -0.122 4.122 21 C -0.085 4.085 22 C -0.151 4.151 23 H 0.099 0.901 24 C -0.184 4.184 25 C -0.158 4.158 26 H 0.098 0.902 27 C -0.088 4.088 28 C -0.111 4.111 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.037 0.963 35 H 0.042 0.958 36 H -0.007 1.007 37 H 0.251 0.749 38 H 0.394 0.606 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.121 0.879 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.080 0.920 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.405 -5.564 -10.263 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.102 0.898 4 C 0.015 3.985 5 N -0.318 5.318 6 C 0.014 3.986 7 C -0.384 4.384 8 H 0.085 0.915 9 C -0.194 4.194 10 N -0.545 5.545 11 Si 0.732 3.268 12 H -0.216 1.216 13 H -0.219 1.219 14 H -0.207 1.207 15 N -0.348 5.348 16 C 0.304 3.696 17 O -0.433 6.433 18 C -0.120 4.120 19 H 0.100 0.900 20 C -0.159 4.159 21 C -0.123 4.123 22 C -0.170 4.170 23 H 0.117 0.883 24 C -0.220 4.220 25 C -0.176 4.176 26 H 0.116 0.884 27 C -0.125 4.125 28 C -0.148 4.148 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.011 0.989 37 H 0.061 0.939 38 H 0.228 0.772 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.139 0.861 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.099 0.901 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.430 -4.737 -10.329 13.057 hybrid contribution 0.994 0.183 0.437 1.101 sum -5.436 -4.554 -9.892 12.172 Atomic orbital electron populations 1.22151 0.97096 1.00943 1.01563 1.21830 0.91527 0.99142 0.86650 0.89812 1.21177 0.85788 0.97157 0.94420 1.43891 0.99016 1.20841 1.68079 1.20926 0.94446 0.85055 0.98184 1.19156 0.92914 1.09690 1.16665 0.91466 1.24900 0.98520 0.99414 0.96522 1.70045 1.15829 1.46712 1.21963 0.86325 0.81002 0.80059 0.79446 1.21634 1.21877 1.20700 1.45814 1.66081 1.13579 1.09308 1.20527 0.77099 0.87192 0.84791 1.90626 1.51226 1.16110 1.85375 1.20855 0.98694 0.98636 0.93817 0.89995 1.21507 0.95611 1.00376 0.98404 1.21161 0.98672 0.97317 0.95114 1.22737 1.00766 0.91871 1.01586 0.88284 1.23615 1.01330 0.96168 1.00871 1.22742 0.93668 1.05682 0.95539 0.88372 1.21183 0.93427 1.00678 0.97196 1.21277 1.03321 0.97926 0.92291 0.93058 0.93306 0.92244 0.92438 0.94132 0.94469 0.93922 0.98856 0.93932 0.77222 0.90697 0.89343 0.91651 0.91352 0.89527 0.86096 0.91464 0.91770 0.90142 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 37.16 0.35 -2.08 16 2 C 0.12 2.19 2.88 -67.93 -0.20 1.99 16 3 H 0.08 1.93 7.58 -51.93 -0.39 1.53 16 4 C 0.14 2.76 5.33 -4.04 -0.02 2.74 16 5 N -0.60 -14.07 2.78 -181.12 -0.50 -14.58 16 6 C 0.16 3.58 7.60 59.85 0.45 4.03 16 7 C -0.25 -6.83 9.68 -15.06 -0.15 -6.98 16 8 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 9 C 0.00 0.14 5.06 -17.43 -0.09 0.05 16 10 N -0.90 -25.08 10.67 55.49 0.59 -24.48 16 11 Si 0.90 21.97 29.58 -169.99 -5.03 16.94 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 N -0.70 -12.60 4.22 -53.81 -0.23 -12.83 16 16 C 0.52 9.75 7.10 -10.98 -0.08 9.67 16 17 O -0.55 -12.42 15.41 5.56 0.09 -12.33 16 18 C -0.10 -1.47 2.03 -93.21 -0.19 -1.66 16 19 H 0.08 1.05 7.90 -51.93 -0.41 0.64 16 20 C -0.12 -1.87 4.59 -27.61 -0.13 -2.00 16 21 C -0.09 -1.08 5.64 -26.54 -0.15 -1.23 16 22 C -0.15 -1.91 6.54 -89.89 -0.59 -2.49 16 23 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 24 C -0.18 -2.56 8.39 -26.73 -0.22 -2.79 16 25 C -0.16 -1.89 6.54 -89.89 -0.59 -2.48 16 26 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 27 C -0.09 -1.02 5.64 -26.54 -0.15 -1.17 16 28 C -0.11 -1.60 4.04 -27.61 -0.11 -1.71 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.06 1.09 8.03 -51.93 -0.42 0.68 16 33 H 0.04 0.69 7.86 -51.93 -0.41 0.29 16 34 H 0.04 0.87 5.25 -51.93 -0.27 0.60 16 35 H 0.04 1.07 7.22 -51.93 -0.37 0.70 16 36 H -0.01 -0.14 7.83 -51.93 -0.41 -0.54 16 37 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.39 6.55 6.21 -40.82 -0.25 6.29 16 39 H 0.07 1.23 5.26 -51.93 -0.27 0.96 16 40 H 0.09 1.64 5.33 -51.93 -0.28 1.36 16 41 H 0.07 0.73 6.29 -51.93 -0.33 0.41 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.12 1.98 3.34 -51.93 -0.17 1.81 16 45 H 0.07 0.73 6.29 -51.93 -0.33 0.40 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.08 1.32 5.34 -51.93 -0.28 1.04 16 48 H 0.07 1.02 7.73 -51.93 -0.40 0.62 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -29.89 353.29 -9.53 -39.42 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -7.92 Total: 8.65 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -1.85 Total: -6.10 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.14 Total: -51.89 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.89 -9.53 -39.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319970.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.304 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds