Wall clock time and date at job start Fri Apr 10 2020 20:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47462 * 2 1 4 4 C 1.53007 * 109.46579 * 239.99861 * 2 1 3 5 5 N 1.46502 * 109.46761 * 184.99977 * 4 2 1 6 6 C 1.46501 * 119.99930 * 270.00180 * 5 4 2 7 7 C 1.36933 * 119.99999 * 90.00231 * 5 4 2 8 8 H 1.07994 * 119.99931 * 343.45288 * 7 5 4 9 9 C 1.38812 * 119.99972 * 163.72301 * 7 5 4 10 10 N 1.31623 * 119.99838 * 344.92153 * 9 7 5 11 11 Si 1.86803 * 120.00019 * 164.92225 * 9 7 5 12 12 H 1.48497 * 109.46932 * 90.00336 * 11 9 7 13 13 H 1.48503 * 109.46959 * 209.99996 * 11 9 7 14 14 H 1.48497 * 109.47013 * 330.00036 * 11 9 7 15 15 N 1.46497 * 109.47196 * 120.00446 * 2 1 3 16 16 C 1.34777 * 119.99857 * 274.99124 * 15 2 1 17 17 O 1.21283 * 120.00111 * 0.02562 * 16 15 2 18 18 C 1.50700 * 120.00106 * 180.02562 * 16 15 2 19 19 H 1.08995 * 108.69471 * 61.78857 * 18 16 15 20 20 C 1.51585 * 108.73607 * 180.02562 * 18 16 15 21 21 C 1.52686 * 111.47015 * 188.20587 * 20 18 16 22 22 C 1.53671 * 108.94485 * 268.93726 * 21 20 18 23 23 H 1.08998 * 115.93643 * 288.81860 * 22 21 20 24 24 C 1.53000 * 117.08640 * 140.75738 * 22 21 20 25 25 C 1.52999 * 60.31401 * 254.83886 * 24 22 21 26 26 H 1.09001 * 118.08840 * 252.04961 * 25 24 22 27 27 C 1.53674 * 117.70847 * 104.88166 * 25 24 22 28 28 C 1.51052 * 109.81171 * 219.64878 * 27 25 24 29 29 H 1.09011 * 109.46521 * 299.99578 * 1 2 3 30 30 H 1.08993 * 109.47687 * 59.99328 * 1 2 3 31 31 H 1.09000 * 109.47462 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46907 * 65.00252 * 4 2 1 33 33 H 1.08991 * 109.47274 * 305.00024 * 4 2 1 34 34 H 1.09005 * 109.46828 * 264.98298 * 6 5 4 35 35 H 1.09000 * 109.47379 * 24.97800 * 6 5 4 36 36 H 1.08997 * 109.47064 * 144.98757 * 6 5 4 37 37 H 0.97002 * 120.00025 * 180.02562 * 10 9 7 38 38 H 0.97001 * 120.00278 * 94.99969 * 15 2 1 39 39 H 1.09003 * 109.07565 * 308.72285 * 20 18 16 40 40 H 1.09004 * 109.08026 * 67.68999 * 20 18 16 41 41 H 1.09002 * 109.56019 * 28.78047 * 21 20 18 42 42 H 1.08998 * 109.55301 * 148.99088 * 21 20 18 43 43 H 1.09010 * 117.46612 * 2.41590 * 24 22 21 44 44 H 1.08997 * 117.47313 * 147.25448 * 24 22 21 45 45 H 1.09001 * 109.55551 * 338.88546 * 27 25 24 46 46 H 1.09004 * 109.55827 * 99.20003 * 27 25 24 47 47 H 1.09003 * 108.79530 * 330.22881 * 28 27 25 48 48 H 1.09001 * 109.16263 * 211.37435 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.4999 -0.8265 -1.1907 6 6 4.3342 0.2340 -1.7614 7 6 4.0848 -1.9159 -0.6024 8 1 3.5045 -2.5566 0.0449 9 6 5.4251 -2.1936 -0.8337 10 7 6.0563 -1.6076 -1.8290 11 14 6.3328 -3.3990 0.2675 12 1 6.2089 -4.7694 -0.2908 13 1 7.7672 -3.0212 0.3383 14 1 5.7439 -3.3645 1.6303 15 7 2.0183 -0.6907 1.1961 16 6 2.1472 -0.0183 2.3570 17 8 1.8585 1.1583 2.4117 18 6 2.6501 -0.7287 3.5873 19 1 3.6612 -1.0873 3.3949 20 6 2.6939 0.2593 4.7362 21 6 3.3823 -0.3383 5.9611 22 6 2.3237 -1.0079 6.8513 23 1 1.6492 -0.3337 7.3793 24 6 2.7080 -2.3316 7.5153 25 6 1.7544 -2.3328 6.3189 26 1 0.7021 -2.5506 6.5017 27 6 2.3103 -2.7937 4.9624 28 6 1.7567 -1.9226 3.8596 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7515 -0.1583 -2.1370 33 1 1.6053 -1.7198 -1.2952 34 1 4.6162 -0.0340 -2.7797 35 1 3.7749 1.1694 -1.7736 36 1 5.2323 0.3553 -1.1558 37 1 6.9928 -1.8019 -1.9909 38 1 2.2490 -1.6318 1.1525 39 1 3.2382 1.1492 4.4202 40 1 1.6753 0.5418 5.0023 41 1 4.1139 -1.0808 5.6426 42 1 3.8839 0.4521 6.5195 43 1 3.7205 -2.7009 7.3516 44 1 2.2839 -2.5436 8.4967 45 1 3.3967 -2.7049 4.9642 46 1 2.0278 -3.8316 4.7858 47 1 0.7688 -1.5685 4.1542 48 1 1.6649 -2.5139 2.9485 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754319971.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:16 Heat of formation + Delta-G solvation = -9.692147 kcal Electronic energy + Delta-G solvation = -25368.988058 eV Core-core repulsion = 22038.507519 eV Total energy + Delta-G solvation = -3330.480539 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.13488 -38.62005 -36.41458 -34.36095 -34.04245 -31.99501 -31.22819 -30.05035 -27.11983 -26.17383 -25.62865 -24.12432 -22.33687 -21.69754 -21.23977 -19.99611 -19.45393 -18.91786 -17.14178 -16.44146 -16.22746 -15.51289 -15.07268 -14.95409 -14.39735 -13.95991 -13.76553 -13.53179 -13.10824 -13.00712 -12.89807 -12.67737 -12.50187 -12.07356 -12.01533 -11.96043 -11.78312 -11.59263 -11.22789 -11.05746 -10.89024 -10.83934 -10.64345 -10.56648 -10.52007 -10.38051 -10.28915 -10.04332 -9.88248 -9.86924 -9.73606 -9.06157 -8.55728 -8.34877 -6.83017 -5.75715 -3.16318 3.22844 3.33003 3.38455 3.41282 3.67741 3.80799 4.44785 4.45926 4.68807 4.78278 4.98427 5.03446 5.14041 5.20600 5.30296 5.32525 5.43126 5.47862 5.55473 5.61852 5.65357 5.67960 5.80311 5.83621 5.85976 5.95506 5.96710 6.05391 6.10100 6.14530 6.15778 6.22052 6.25650 6.32939 6.42246 6.47460 6.49257 6.53551 6.77432 6.84286 7.21237 7.43886 7.63026 7.79149 8.21597 8.32695 8.86763 9.19195 9.84076 10.31958 11.29426 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.013607 B = 0.005482 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.198528 B = 5106.042540 C = 6383.578621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.116 3.884 3 H 0.076 0.924 4 C 0.142 3.858 5 N -0.601 5.601 6 C 0.166 3.834 7 C -0.247 4.247 8 H 0.066 0.934 9 C 0.000 4.000 10 N -0.906 5.906 11 Si 0.898 3.102 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.280 1.280 15 N -0.695 5.695 16 C 0.516 3.484 17 O -0.561 6.561 18 C -0.104 4.104 19 H 0.093 0.907 20 C -0.093 4.093 21 C -0.091 4.091 22 C -0.149 4.149 23 H 0.103 0.897 24 C -0.175 4.175 25 C -0.150 4.150 26 H 0.102 0.898 27 C -0.089 4.089 28 C -0.105 4.105 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.026 0.974 35 H -0.005 1.005 36 H 0.048 0.952 37 H 0.252 0.748 38 H 0.402 0.598 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.910 -0.988 13.325 16.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.009 3.991 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.323 5.323 6 C 0.021 3.979 7 C -0.377 4.377 8 H 0.084 0.916 9 C -0.198 4.198 10 N -0.551 5.551 11 Si 0.728 3.272 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.205 1.205 15 N -0.345 5.345 16 C 0.302 3.698 17 O -0.441 6.441 18 C -0.125 4.125 19 H 0.111 0.889 20 C -0.131 4.131 21 C -0.128 4.128 22 C -0.167 4.167 23 H 0.121 0.879 24 C -0.212 4.212 25 C -0.168 4.168 26 H 0.120 0.880 27 C -0.127 4.127 28 C -0.143 4.143 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.014 0.986 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.238 0.762 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.904 -0.167 13.241 15.957 hybrid contribution 0.750 -1.122 0.512 1.443 sum -8.154 -1.289 13.753 16.040 Atomic orbital electron populations 1.22116 0.96676 1.01310 1.01545 1.21841 0.92099 0.98295 0.86911 0.90619 1.21043 0.85958 0.98182 0.93446 1.43875 0.98933 1.21263 1.68269 1.20798 0.93047 0.86030 0.98022 1.19015 0.93648 1.03823 1.21208 0.91594 1.24873 0.98016 0.99258 0.97644 1.70110 1.10427 1.45912 1.28683 0.86364 0.79526 0.80798 0.80511 1.21530 1.21642 1.20534 1.45954 1.65399 1.14315 1.08860 1.20520 0.77334 0.87111 0.84801 1.90617 1.51581 1.16268 1.85587 1.20868 1.01333 0.96443 0.93850 0.88851 1.20938 1.01816 0.97580 0.92780 1.21314 0.96490 0.99758 0.95256 1.22724 1.01697 0.90157 1.02166 0.87939 1.23078 1.00259 1.01151 0.96673 1.22692 0.98311 1.01524 0.94307 0.88007 1.20967 1.00727 0.98896 0.92082 1.20851 0.99228 0.95322 0.98865 0.92955 0.92232 0.92974 0.93078 0.93140 0.95601 0.98649 0.93334 0.93773 0.76179 0.91074 0.91571 0.91506 0.91533 0.88895 0.89195 0.91364 0.91325 0.91584 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.48 37.16 0.35 -1.98 16 2 C 0.12 2.09 2.88 -67.93 -0.20 1.89 16 3 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 4 C 0.14 2.75 5.30 -4.04 -0.02 2.73 16 5 N -0.60 -14.41 2.82 -181.12 -0.51 -14.92 16 6 C 0.17 4.10 8.97 59.85 0.54 4.64 16 7 C -0.25 -6.30 8.79 -15.06 -0.13 -6.43 16 8 H 0.07 1.57 6.43 -52.49 -0.34 1.23 16 9 C 0.00 0.00 5.08 -17.43 -0.09 -0.09 16 10 N -0.91 -25.87 10.44 55.49 0.58 -25.29 16 11 Si 0.90 20.97 29.58 -169.99 -5.03 15.94 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 N -0.69 -12.37 4.28 -53.80 -0.23 -12.60 16 16 C 0.52 9.31 7.10 -10.99 -0.08 9.23 16 17 O -0.56 -11.78 15.41 5.55 0.09 -11.70 16 18 C -0.10 -1.52 2.03 -93.20 -0.19 -1.71 16 19 H 0.09 1.44 7.86 -51.93 -0.41 1.04 16 20 C -0.09 -1.27 4.26 -27.61 -0.12 -1.39 16 21 C -0.09 -1.03 5.42 -26.54 -0.14 -1.17 16 22 C -0.15 -1.52 5.68 -89.89 -0.51 -2.03 16 23 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 24 C -0.17 -1.62 9.82 -26.73 -0.26 -1.88 16 25 C -0.15 -1.50 5.68 -89.89 -0.51 -2.02 16 26 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 27 C -0.09 -0.98 5.37 -27.36 -0.15 -1.12 16 28 C -0.10 -1.29 4.76 -28.43 -0.14 -1.43 16 29 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.05 0.94 8.04 -51.93 -0.42 0.53 16 34 H 0.03 0.68 7.52 -51.93 -0.39 0.29 16 35 H -0.01 -0.11 8.03 -51.93 -0.42 -0.53 16 36 H 0.05 1.31 6.92 -51.93 -0.36 0.95 16 37 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 38 H 0.40 7.02 5.62 -40.82 -0.23 6.79 16 39 H 0.07 1.09 7.73 -51.93 -0.40 0.68 16 40 H 0.07 0.92 7.79 -51.93 -0.40 0.52 16 41 H 0.07 0.77 6.19 -51.93 -0.32 0.45 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.87 8.14 -51.92 -0.42 0.44 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.79 6.12 -51.93 -0.32 0.47 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 0.80 7.79 -51.93 -0.40 0.40 16 48 H 0.07 0.83 6.98 -51.93 -0.36 0.47 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -29.71 364.75 -9.78 -39.48 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -8.52 Total: 6.35 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.64 Total: -2.75 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.16 Total: -52.82 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.71 -9.78 -39.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319971.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.789 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds