Wall clock time and date at job start Fri Apr 10 2020 20:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35914 * 117.00173 * 2 1 4 4 C 1.38865 * 119.97623 * 0.02738 * 3 2 1 5 5 C 1.38258 * 120.24408 * 179.97438 * 4 3 2 6 6 C 1.37999 * 120.21191 * 359.71816 * 5 4 3 7 7 N 1.48018 * 120.01869 * 180.27860 * 6 5 4 8 8 O 1.21804 * 120.00211 * 353.41216 * 7 6 5 9 9 O 1.21795 * 119.99934 * 173.41120 * 7 6 5 10 10 C 1.39610 * 119.96009 * 0.55527 * 6 5 4 11 11 C 1.47738 * 120.12513 * 179.72000 * 10 6 5 12 12 O 1.21474 * 119.99637 * 304.82159 * 11 10 6 13 13 O 1.34704 * 120.00298 * 124.81811 * 11 10 6 14 14 C 1.45199 * 117.00103 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.47363 * 29.99681 * 14 13 11 16 16 C 1.53004 * 109.46762 * 269.99637 * 14 13 11 17 17 C 1.50706 * 109.47228 * 150.00080 * 14 13 11 18 18 H 1.07998 * 119.99577 * 359.97438 * 17 14 13 19 19 C 1.37873 * 120.00120 * 179.97438 * 17 14 13 20 20 N 1.31519 * 119.99754 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00101 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47295 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47186 * 120.00197 * 21 19 17 24 24 H 1.48503 * 109.47067 * 240.00165 * 21 19 17 25 25 C 1.38430 * 119.98374 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47261 * 59.99583 * 1 2 3 27 27 H 1.08999 * 109.46993 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46913 * 299.99680 * 1 2 3 29 29 H 1.07999 * 119.88144 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.89304 * 180.02562 * 5 4 3 31 31 H 1.08997 * 109.47051 * 60.00219 * 16 14 13 32 32 H 1.09005 * 109.46835 * 180.02562 * 16 14 13 33 33 H 1.08997 * 109.47217 * 300.00133 * 16 14 13 34 34 H 0.97010 * 119.99570 * 179.97438 * 20 19 17 35 35 H 1.08000 * 120.11062 * 0.04503 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2893 2.3753 0.0006 5 6 1.9113 3.6101 0.0011 6 6 3.2887 3.6938 0.0069 7 7 3.9501 5.0180 0.0137 8 8 3.2853 6.0315 -0.1068 9 8 5.1591 5.0942 0.1399 10 6 4.0580 2.5288 0.0006 11 6 5.5330 2.6143 0.0006 12 8 6.1042 3.2536 -0.8599 13 8 6.2442 1.9833 0.9547 14 6 7.6892 2.1113 0.8929 15 1 7.9503 3.0706 0.4461 16 6 8.2655 0.9784 0.0411 17 6 8.2606 2.0334 2.2852 18 1 7.6033 1.9013 3.1319 19 6 9.6223 2.1306 2.4781 20 7 10.4226 2.2919 1.4469 21 14 10.3304 2.0348 4.2040 22 1 9.2278 1.8532 5.1821 23 1 11.2645 0.8839 4.2926 24 1 11.0618 3.2906 4.5094 25 6 3.4285 1.2830 -0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.2110 2.3161 0.0014 30 1 1.3172 4.5120 0.0020 31 1 7.8523 1.0347 -0.9660 32 1 9.3503 1.0742 -0.0050 33 1 8.0045 0.0190 0.4878 34 1 11.3807 2.3608 1.5827 35 1 4.0182 0.3782 -0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113686607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:49 Heat of formation + Delta-G solvation = -91.340615 kcal Electronic energy + Delta-G solvation = -23731.263743 eV Core-core repulsion = 19892.024715 eV Total energy + Delta-G solvation = -3839.239028 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.05009 -40.70078 -39.52353 -37.78617 -36.32450 -35.64020 -33.28588 -32.10585 -31.49701 -29.55668 -28.26684 -26.02709 -25.31790 -24.54679 -22.80580 -21.61911 -20.20373 -19.08812 -18.56012 -18.40549 -17.32842 -16.93386 -16.73988 -16.57972 -16.32905 -15.57951 -15.08791 -14.78315 -14.44779 -14.08528 -13.87685 -13.37715 -13.17196 -12.77075 -12.28118 -11.96536 -11.79364 -11.71659 -11.34637 -11.19666 -11.08660 -10.87408 -10.83302 -10.75219 -10.35411 -10.27693 -9.93654 -9.71023 -9.54341 -9.13055 -8.89901 -8.47086 -6.15830 -4.22370 -0.22107 0.44098 1.37389 1.51031 2.45378 2.69530 2.96049 3.26672 3.32477 3.35975 3.42559 4.00063 4.18342 4.31952 4.41940 4.53445 4.61361 4.62091 4.95165 5.12389 5.13962 5.18350 5.33824 5.47988 5.63453 5.75418 6.49160 6.61710 6.64608 6.86128 6.88745 7.07893 7.58713 7.72507 7.85882 7.90042 8.13109 8.49143 8.85962 9.42394 10.91844 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016962 B = 0.004529 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.321621 B = 6180.349685 C = 7053.716401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.300 6.300 3 C 0.176 3.824 4 C -0.199 4.199 5 C -0.015 4.015 6 C -0.050 4.050 7 N 0.025 4.975 8 O -0.177 6.177 9 O -0.114 6.114 10 C 0.010 3.990 11 C 0.492 3.508 12 O -0.472 6.472 13 O -0.343 6.343 14 C 0.215 3.785 15 H 0.055 0.945 16 C -0.156 4.156 17 C -0.519 4.519 18 H 0.069 0.931 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.912 3.088 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.281 1.281 25 C -0.109 4.109 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.155 0.845 30 H 0.162 0.838 31 H 0.016 0.984 32 H 0.102 0.898 33 H 0.037 0.963 34 H 0.266 0.734 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.729 -4.189 -3.142 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.212 6.212 3 C 0.129 3.871 4 C -0.218 4.218 5 C -0.034 4.034 6 C -0.133 4.133 7 N 0.546 4.454 8 O -0.386 6.386 9 O -0.338 6.338 10 C 0.007 3.993 11 C 0.332 3.668 12 O -0.360 6.360 13 O -0.259 6.259 14 C 0.163 3.837 15 H 0.073 0.927 16 C -0.214 4.214 17 C -0.557 4.557 18 H 0.087 0.913 19 C -0.139 4.139 20 N -0.525 5.525 21 Si 0.739 3.261 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.128 4.128 26 H 0.081 0.919 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.172 0.828 30 H 0.179 0.821 31 H 0.035 0.965 32 H 0.120 0.880 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -21.601 -4.805 -3.434 22.394 hybrid contribution 0.376 0.444 0.732 0.935 sum -21.226 -4.361 -2.702 21.837 Atomic orbital electron populations 1.23271 0.77183 1.05017 1.01975 1.86184 1.22368 1.25626 1.87041 1.19115 0.91951 0.84929 0.91123 1.21343 1.01277 0.90615 1.08589 1.20708 0.90924 0.99746 0.92064 1.20951 0.93033 0.82686 1.16655 1.43404 1.01482 1.02177 0.98351 1.94469 1.65046 1.24871 1.54212 1.94768 0.95122 1.93247 1.50663 1.19089 0.93146 0.91437 0.95637 1.20385 0.86639 0.77876 0.81911 1.90879 1.70874 1.37348 1.36858 1.86594 1.26530 1.65425 1.47338 1.20810 0.68071 0.97061 0.97736 0.92702 1.22194 1.05037 0.98301 0.95822 1.21020 0.92024 1.51429 0.91261 0.91271 1.24866 0.96351 0.94630 0.98024 1.69907 1.04219 1.48786 1.29635 0.86212 0.78945 0.77770 0.83164 1.19531 1.20754 1.20654 1.20566 0.91764 0.97409 1.03082 0.91920 0.87347 0.91841 0.82794 0.82055 0.96459 0.87976 0.94365 0.92408 0.81676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.30 -2.60 10.49 -19.47 -0.20 -2.81 16 3 C 0.18 1.80 6.68 -39.28 -0.26 1.53 16 4 C -0.20 -1.66 9.03 -39.34 -0.36 -2.01 16 5 C -0.02 -0.17 9.54 -39.66 -0.38 -0.54 16 6 C -0.05 -0.79 6.85 -79.52 -0.55 -1.33 16 7 N 0.02 0.47 4.45 34.17 0.15 0.63 16 8 O -0.18 -3.14 18.46 -29.46 -0.54 -3.68 16 9 O -0.11 -2.59 14.99 -37.09 -0.56 -3.15 16 10 C 0.01 0.16 5.76 -105.00 -0.60 -0.44 16 11 C 0.49 10.84 5.95 34.61 0.21 11.05 16 12 O -0.47 -11.69 14.02 -27.26 -0.38 -12.07 16 13 O -0.34 -8.30 9.87 -40.50 -0.40 -8.70 16 14 C 0.22 5.85 2.56 -27.88 -0.07 5.78 16 15 H 0.06 1.66 7.16 -51.93 -0.37 1.28 16 16 C -0.16 -3.93 9.33 37.16 0.35 -3.58 16 17 C -0.52 -14.74 8.90 -34.44 -0.31 -15.05 16 18 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -25.38 11.32 55.43 0.63 -24.76 16 21 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C -0.11 -1.45 9.73 -39.01 -0.38 -1.83 16 26 H 0.06 0.17 7.66 -51.93 -0.40 -0.22 16 27 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 29 H 0.15 0.67 6.28 -52.49 -0.33 0.34 16 30 H 0.16 1.35 7.62 -52.49 -0.40 0.95 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 2.75 6.07 -51.93 -0.32 2.44 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.17 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 314.96 15.07 4.75 4.75 Total: -1.00 -33.85 314.96 -6.48 -40.33 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -3.45 Total: -3.14 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.45 Total: -3.69 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.78 Total: -24.13 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -2.09 Total: -30.41 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.85 -6.48 -40.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113686607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.013 kcal (2) G-P(sol) polarization free energy of solvation -33.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds