Wall clock time and date at job start Fri Apr 10 2020 20:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99846 * 2 1 4 4 H 1.48506 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47342 * 299.99245 * 3 2 1 6 6 H 1.48503 * 109.47479 * 59.99674 * 3 2 1 7 7 C 1.37876 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99848 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00056 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.34769 * 120.00345 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00442 * 0.02562 * 11 10 9 13 13 C 1.50709 * 119.99974 * 179.97438 * 11 10 9 14 14 C 1.50699 * 109.47120 * 179.97438 * 13 11 10 15 15 C 1.38135 * 119.99200 * 265.00660 * 14 13 11 16 16 C 1.38428 * 120.00323 * 179.97438 * 15 14 13 17 17 F 1.35104 * 119.98239 * 180.02562 * 16 15 14 18 18 C 1.38451 * 120.03641 * 0.30695 * 16 15 14 19 19 C 1.38222 * 120.08413 * 359.50723 * 18 16 15 20 20 C 1.38609 * 119.93961 * 0.42568 * 19 18 16 21 21 O 1.36026 * 120.53232 * 179.97438 * 20 19 18 22 22 C 1.43045 * 116.85306 * 343.41193 * 21 20 19 23 23 O 1.43264 * 108.59853 * 47.46319 * 22 21 20 24 24 C 1.43083 * 113.03317 * 294.51755 * 23 22 21 25 25 H 0.97001 * 120.00232 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47243 * 59.99893 * 9 7 2 27 27 H 1.08999 * 109.47653 * 299.99386 * 9 7 2 28 28 H 0.97003 * 119.99359 * 0.02562 * 10 9 7 29 29 H 1.09002 * 109.46669 * 60.00434 * 13 11 10 30 30 H 1.08992 * 109.47270 * 300.00240 * 13 11 10 31 31 H 1.07997 * 119.99689 * 359.97438 * 15 14 13 32 32 H 1.08003 * 119.95465 * 179.73400 * 18 16 15 33 33 H 1.09002 * 109.61819 * 167.19531 * 22 21 20 34 34 H 1.09003 * 109.61689 * 287.55532 * 22 21 20 35 35 H 1.08991 * 109.50444 * 168.54668 * 24 23 22 36 36 H 1.09004 * 109.49511 * 288.61868 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5614 -5.1050 0.0011 13 6 2.7331 -6.0288 0.0005 14 6 1.9797 -7.3339 0.0019 15 6 1.7259 -7.9834 1.1943 16 6 1.0333 -9.1820 1.1959 17 9 0.7849 -9.8167 2.3624 18 6 0.6001 -9.7337 0.0022 19 6 0.8493 -9.0840 -1.1921 20 6 1.5414 -7.8831 -1.1951 21 8 1.7937 -7.2338 -2.3634 22 6 1.6526 -7.9925 -3.5679 23 8 0.4092 -8.7024 -3.5176 24 6 0.3715 -9.6932 -2.4860 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6241 -2.5568 0.8903 28 1 3.1567 -3.4354 0.0009 29 1 3.3604 -5.9709 0.8901 30 1 3.3591 -5.9712 -0.8899 31 1 2.0679 -7.5561 2.1253 32 1 0.0636 -10.6710 0.0046 33 1 1.6559 -7.3206 -4.4262 34 1 2.4776 -8.6998 -3.6536 35 1 -0.6502 -10.0524 -2.3637 36 1 1.0200 -10.5262 -2.7578 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357840708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:21 Heat of formation + Delta-G solvation = -146.517139 kcal Electronic energy + Delta-G solvation = -23254.793751 eV Core-core repulsion = 19425.534879 eV Total energy + Delta-G solvation = -3829.258872 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.88712 -41.16468 -38.93385 -37.72917 -36.58178 -34.16432 -33.08558 -32.27939 -30.89413 -28.42616 -26.77122 -26.60630 -25.97321 -22.94306 -21.75148 -21.27256 -19.62202 -18.73719 -17.68198 -17.40524 -17.07789 -16.29517 -15.82584 -15.62467 -15.45194 -15.33611 -15.10162 -14.59213 -14.47487 -14.38658 -14.14658 -13.63296 -13.24480 -12.99139 -12.80451 -12.29948 -12.19424 -12.01926 -11.90660 -11.34342 -11.24042 -10.97205 -10.90368 -10.87797 -10.44538 -10.29632 -9.35745 -9.22761 -8.83839 -8.71864 -8.17275 -7.84084 -6.14727 -4.21599 0.93030 1.07820 2.96962 3.24217 3.24505 3.31501 3.34541 3.41502 3.43031 4.00318 4.18967 4.34310 4.41030 4.45410 4.51191 4.84673 4.92872 4.98221 5.03600 5.20053 5.21325 5.33554 5.37261 5.48034 5.62428 5.84799 5.90124 5.95108 6.18225 6.38382 6.59881 7.14978 7.34629 7.47914 7.55475 7.69245 7.99488 8.66192 8.80920 9.14917 9.45188 10.95577 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.020553 B = 0.003573 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.996426 B = 7834.267366 C = 8657.037063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.713 5.713 11 C 0.503 3.497 12 O -0.547 6.547 13 C -0.100 4.100 14 C -0.050 4.050 15 C -0.105 4.105 16 C 0.070 3.930 17 F -0.140 7.140 18 C -0.114 4.114 19 C -0.179 4.179 20 C 0.143 3.857 21 O -0.317 6.317 22 C 0.222 3.778 23 O -0.383 6.383 24 C 0.106 3.894 25 H 0.265 0.735 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.390 0.610 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.063 0.937 35 H 0.116 0.884 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.991 -21.145 -3.730 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.362 5.362 11 C 0.287 3.713 12 O -0.426 6.426 13 C -0.140 4.140 14 C -0.051 4.051 15 C -0.124 4.124 16 C 0.050 3.950 17 F -0.119 7.119 18 C -0.133 4.133 19 C -0.181 4.181 20 C 0.097 3.903 21 O -0.232 6.232 22 C 0.109 3.891 23 O -0.302 6.302 24 C 0.029 3.971 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.223 0.777 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.845 -20.932 -3.863 22.074 hybrid contribution 0.878 0.741 0.339 1.198 sum 6.723 -20.191 -3.524 21.571 Atomic orbital electron populations 1.69990 1.06123 1.27159 1.49024 1.24958 0.94900 0.99454 0.94744 0.86367 0.79823 0.83002 0.77739 1.19627 1.20806 1.20819 1.21270 0.93295 0.90458 1.53022 0.91833 1.19096 0.88323 0.81942 0.97710 1.46422 1.11058 1.06005 1.72703 1.20183 0.89287 0.84077 0.77741 1.90685 1.16775 1.84784 1.50337 1.20594 0.97980 0.90277 1.05125 1.18630 1.00205 0.96396 0.89911 1.20863 0.99098 0.93881 0.98534 1.17346 1.02795 0.93473 0.81356 1.91489 1.92792 1.81439 1.46200 1.20569 1.01645 1.00985 0.90070 1.20017 1.03851 0.97390 0.96811 1.18235 0.94940 0.91007 0.86071 1.86348 1.83996 1.39873 1.13012 1.24500 0.85986 0.91753 0.86858 1.88315 1.37151 1.51814 1.52949 1.21512 1.03194 0.89598 0.82747 0.92519 0.95572 0.95612 0.77737 0.88105 0.87723 0.83877 0.84333 0.83930 0.91977 0.86658 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.74 5.43 -5.20 -0.03 6.71 16 10 N -0.71 -15.16 5.55 -61.47 -0.34 -15.50 16 11 C 0.50 10.23 7.82 -10.98 -0.09 10.15 16 12 O -0.55 -13.70 16.03 5.56 0.09 -13.61 16 13 C -0.10 -1.43 5.54 -29.03 -0.16 -1.59 16 14 C -0.05 -0.74 4.39 -104.46 -0.46 -1.20 16 15 C -0.10 -1.43 9.65 -39.55 -0.38 -1.81 16 16 C 0.07 0.91 7.30 -39.43 -0.29 0.62 16 17 F -0.14 -1.83 17.27 2.25 0.04 -1.80 16 18 C -0.11 -1.31 9.69 -39.51 -0.38 -1.69 16 19 C -0.18 -2.23 5.82 -104.45 -0.61 -2.83 16 20 C 0.14 2.10 6.53 -39.24 -0.26 1.85 16 21 O -0.32 -4.62 9.58 -43.71 -0.42 -5.04 16 22 C 0.22 2.31 7.94 101.05 0.80 3.11 16 23 O -0.38 -4.58 10.97 -59.11 -0.65 -5.22 16 24 C 0.11 1.02 6.87 36.05 0.25 1.27 16 25 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.39 6.97 8.32 -40.82 -0.34 6.63 16 29 H 0.10 1.13 8.05 -51.93 -0.42 0.71 16 30 H 0.10 1.31 7.67 -51.93 -0.40 0.91 16 31 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.14 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 35 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 320.15 15.07 4.82 4.82 Total: -1.00 -35.36 320.15 -6.83 -42.19 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -4.07 Total: 2.80 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -2.02 Total: 1.10 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.40 Total: -41.16 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.98 Total: -23.87 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.36 -6.83 -42.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357840708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.331 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds