Wall clock time and date at job start Fri Apr 10 2020 20:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35000 * 127.27676 * 2 1 4 4 C 1.39489 * 111.68657 * 179.72898 * 3 2 1 5 5 C 1.47689 * 122.10383 * 180.24474 * 4 3 2 6 6 O 1.21569 * 120.00277 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99857 * 180.02562 * 5 4 3 8 8 C 1.47426 * 125.64736 * 0.02562 * 7 5 4 9 9 C 1.54913 * 104.82917 * 155.83744 * 8 7 5 10 10 C 1.55160 * 101.58336 * 37.01066 * 9 8 7 11 11 H 1.09000 * 110.71885 * 83.03804 * 10 9 8 12 12 N 1.46497 * 110.71865 * 206.13716 * 10 9 8 13 13 C 1.36944 * 119.99725 * 273.54001 * 12 10 9 14 14 H 1.07993 * 119.99764 * 0.02562 * 13 12 10 15 15 C 1.38812 * 119.99706 * 179.97438 * 13 12 10 16 16 N 1.31615 * 120.00367 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99593 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47279 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47203 * 120.00594 * 17 15 13 20 20 H 1.48506 * 109.47196 * 240.00397 * 17 15 13 21 21 C 1.47023 * 125.64692 * 179.71689 * 7 5 4 22 22 H 1.09000 * 109.88112 * 300.51455 * 21 7 5 23 23 C 1.53008 * 109.88171 * 61.67880 * 21 7 5 24 24 N 1.30602 * 115.79136 * 0.26959 * 4 3 2 25 25 S 1.56151 * 109.79986 * 0.02562 * 24 4 3 26 26 H 1.09002 * 109.46670 * 89.99600 * 1 2 3 27 27 H 1.08998 * 109.46952 * 209.99666 * 1 2 3 28 28 H 1.09005 * 109.46890 * 329.99829 * 1 2 3 29 29 H 1.08002 * 124.15910 * 0.02562 * 3 2 1 30 30 H 1.09002 * 110.36607 * 274.67467 * 8 7 5 31 31 H 1.08991 * 110.36543 * 36.99896 * 8 7 5 32 32 H 1.08999 * 111.00449 * 155.08240 * 9 8 7 33 33 H 1.09004 * 111.00417 * 278.89478 * 9 8 7 34 34 H 0.96995 * 120.00576 * 93.54531 * 12 10 9 35 35 H 0.97000 * 120.00317 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47140 * 58.54437 * 23 21 7 37 37 H 1.08993 * 109.46671 * 178.54689 * 23 21 7 38 38 H 1.08998 * 109.47039 * 298.54377 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0742 0.0000 4 6 3.6682 0.6993 0.0061 5 6 4.7604 1.6934 0.0127 6 8 4.5014 2.8812 0.0134 7 7 6.0444 1.2838 0.0180 8 6 6.4988 -0.1187 0.0174 9 6 7.9238 -0.0735 -0.5888 10 6 8.4712 1.2531 0.0009 11 1 8.8572 1.0971 1.0082 12 7 9.5072 1.8178 -0.8675 13 6 10.8101 1.4206 -0.7265 14 1 11.0738 0.6908 0.0246 15 6 11.7916 1.9552 -1.5497 16 7 11.4701 2.8442 -2.4655 17 14 13.5688 1.4129 -1.3578 18 1 13.6656 0.4114 -0.2656 19 1 14.0412 0.8063 -2.6283 20 1 14.4125 2.5894 -1.0273 21 6 7.2239 2.1615 0.0189 22 1 7.2133 2.7976 -0.8662 23 6 7.2298 3.0238 1.2829 24 7 3.8995 -0.5860 0.0052 25 16 2.5473 -1.3668 -0.0036 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.9808 2.0980 0.0004 30 1 6.5317 -0.5073 1.0352 31 1 5.8424 -0.7298 -0.6019 32 1 8.5177 -0.9241 -0.2544 33 1 7.8842 -0.0311 -1.6773 34 1 9.2703 2.4730 -1.5424 35 1 12.1560 3.2181 -3.0405 36 1 7.2340 2.3796 2.1622 37 1 8.1198 3.6529 1.2892 38 1 6.3399 3.6530 1.2977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986237694.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:17:02 Heat of formation + Delta-G solvation = 26.692176 kcal Electronic energy + Delta-G solvation = -21406.772591 eV Core-core repulsion = 18183.530566 eV Total energy + Delta-G solvation = -3223.242025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.60911 -38.86864 -37.18511 -34.21708 -33.49125 -31.52580 -30.85223 -29.16851 -28.45523 -25.70482 -25.14847 -23.01481 -22.36080 -20.73722 -19.99162 -19.09277 -18.40356 -17.18793 -16.63678 -16.10716 -15.50389 -14.93325 -14.63183 -14.28402 -13.84581 -13.61771 -13.34383 -13.27614 -13.22989 -13.00769 -12.88471 -12.70895 -12.12316 -11.83734 -11.70640 -11.30274 -11.21177 -11.01757 -10.91795 -10.70574 -10.54074 -10.19518 -9.96811 -9.76828 -9.70470 -9.66770 -8.99203 -8.92138 -8.35271 -7.01190 -5.80417 -3.10640 0.40167 1.20061 1.65213 1.65888 3.11656 3.30659 3.41668 3.47446 3.49651 4.32011 4.55985 4.63182 4.88021 4.95937 5.11461 5.15221 5.27513 5.41088 5.44185 5.56357 5.61971 5.64003 5.66084 5.76556 5.87737 6.02963 6.11264 6.19747 6.21789 6.38758 6.49082 6.62709 6.65426 6.75681 6.96536 7.67566 7.72030 8.24817 8.37012 9.48490 10.03079 10.38081 11.41916 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.034777 B = 0.003327 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.948005 B = 8413.019802 C = 8860.952108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.248 4.248 3 C -0.141 4.141 4 C 0.065 3.935 5 C 0.598 3.402 6 O -0.535 6.535 7 N -0.588 5.588 8 C 0.103 3.897 9 C -0.157 4.157 10 C 0.177 3.823 11 H 0.066 0.934 12 N -0.715 5.715 13 C -0.241 4.241 14 H 0.073 0.927 15 C -0.011 4.011 16 N -0.930 5.930 17 Si 0.908 3.092 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.127 3.873 22 H 0.080 0.920 23 C -0.155 4.155 24 N -0.509 5.509 25 S 0.441 5.559 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.170 0.830 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.223 -8.958 6.267 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.379 4.379 3 C -0.173 4.173 4 C -0.110 4.110 5 C 0.381 3.619 6 O -0.412 6.412 7 N -0.320 5.320 8 C -0.020 4.020 9 C -0.199 4.199 10 C 0.065 3.935 11 H 0.083 0.917 12 N -0.356 5.356 13 C -0.372 4.372 14 H 0.091 0.909 15 C -0.207 4.207 16 N -0.578 5.578 17 Si 0.739 3.261 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.218 1.218 21 C 0.024 3.976 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.343 5.343 25 S 0.597 5.403 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.188 0.812 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.476 -10.355 6.314 24.664 hybrid contribution 0.593 1.767 -0.239 1.879 sum -20.882 -8.587 6.075 23.382 Atomic orbital electron populations 1.20204 0.86172 1.03606 1.03214 1.26065 1.03238 1.00115 1.08445 1.21253 0.90262 1.01916 1.03892 1.21119 0.94895 0.89260 1.05722 1.16856 0.80686 0.86554 0.77800 1.90782 1.82865 1.15941 1.51568 1.48374 1.04351 1.09370 1.69905 1.22598 0.96466 0.81882 1.01102 1.23614 0.93460 1.01350 1.01469 1.21257 0.87060 0.90072 0.95099 0.91657 1.42363 1.03233 1.50133 1.39867 1.19248 0.83786 1.19418 1.14775 0.90939 1.24765 0.98165 0.99300 0.98514 1.69674 1.32589 1.32208 1.23307 0.86109 0.85067 0.77703 0.77227 1.20499 1.21858 1.21826 1.21978 0.84267 0.92213 0.99174 0.90161 1.22054 1.02816 0.99909 0.96490 1.72722 1.27260 1.10808 1.23477 1.80554 0.88390 1.13085 1.58272 0.90206 0.90741 0.90263 0.81250 0.91917 0.89177 0.90611 0.90766 0.77994 0.93441 0.93044 0.90939 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.46 36.01 0.38 -0.01 16 2 C -0.25 -2.18 6.58 -35.46 -0.23 -2.41 16 3 C -0.14 -1.64 9.93 -40.27 -0.40 -2.04 16 4 C 0.06 0.92 6.61 -84.06 -0.56 0.36 16 5 C 0.60 10.30 7.64 -12.40 -0.09 10.21 16 6 O -0.53 -10.38 15.69 5.31 0.08 -10.29 16 7 N -0.59 -10.10 3.07 -164.17 -0.50 -10.60 16 8 C 0.10 1.60 6.02 -2.53 -0.02 1.59 16 9 C -0.16 -2.78 6.76 -24.58 -0.17 -2.95 16 10 C 0.18 3.52 3.11 -66.10 -0.21 3.31 16 11 H 0.07 1.30 7.84 -51.93 -0.41 0.89 16 12 N -0.72 -17.70 5.25 -51.66 -0.27 -17.97 16 13 C -0.24 -6.55 9.98 -15.06 -0.15 -6.70 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 16 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 17 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 21 C 0.13 2.37 3.20 -66.95 -0.21 2.15 16 22 H 0.08 1.65 7.68 -51.93 -0.40 1.25 16 23 C -0.15 -2.68 9.11 37.16 0.34 -2.34 16 24 N -0.51 -6.54 7.90 24.85 0.20 -6.35 16 25 S 0.44 3.93 23.20 -107.50 -2.49 1.44 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.17 1.88 7.99 -52.49 -0.42 1.46 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 1.35 6.01 -51.93 -0.31 1.04 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.39 10.27 7.50 -40.82 -0.31 9.96 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.06 1.11 6.87 -51.93 -0.36 0.75 16 LS Contribution 329.10 15.07 4.96 4.96 Total: -1.00 -31.69 329.10 -8.87 -40.56 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.13 Total: 7.54 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.42 Total: 0.76 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.15 Total: -62.08 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -2.49 Total: 1.44 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.69 -8.87 -40.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986237694.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.254 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds