Wall clock time and date at job start Fri Apr 10 2020 20:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47073 * 2 1 4 4 N 1.46503 * 109.46731 * 180.02562 * 3 2 1 5 5 C 1.36889 * 119.99425 * 264.76011 * 4 3 2 6 6 H 1.08001 * 119.99412 * 130.58249 * 5 4 3 7 7 C 1.39036 * 120.00048 * 310.57875 * 5 4 3 8 8 N 1.31372 * 120.00126 * 170.23809 * 7 5 4 9 9 Si 1.86801 * 120.00092 * 350.23497 * 7 5 4 10 10 H 1.48505 * 109.46882 * 95.29968 * 9 7 5 11 11 H 1.48506 * 109.47096 * 215.29835 * 9 7 5 12 12 H 1.48498 * 109.47278 * 335.29665 * 9 7 5 13 13 C 1.34767 * 120.00225 * 84.76537 * 4 3 2 14 14 O 1.21604 * 120.00466 * 2.14047 * 13 4 3 15 15 C 1.47657 * 119.99917 * 182.14929 * 13 4 3 16 16 C 1.39698 * 120.15886 * 307.22663 * 15 13 4 17 17 C 1.37879 * 119.85839 * 179.97438 * 16 15 13 18 18 C 1.50697 * 119.90306 * 180.28285 * 17 16 15 19 19 C 1.38439 * 120.18467 * 0.02562 * 17 16 15 20 20 C 1.50706 * 119.82877 * 179.97438 * 19 17 16 21 21 C 1.38278 * 120.33346 * 359.97338 * 19 17 16 22 22 C 1.38132 * 120.13573 * 0.02562 * 21 19 17 23 23 Cl 1.73603 * 120.09316 * 180.02562 * 22 21 19 24 24 H 1.09005 * 109.46722 * 300.00011 * 1 2 3 25 25 H 1.08998 * 109.47574 * 59.99210 * 1 2 3 26 26 H 1.09003 * 109.47387 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46859 * 240.00398 * 2 1 3 28 28 H 1.08998 * 109.47574 * 120.00789 * 2 1 3 29 29 H 1.08999 * 109.46953 * 60.00455 * 3 2 1 30 30 H 1.09000 * 109.47210 * 300.00110 * 3 2 1 31 31 H 0.96989 * 120.00389 * 179.97438 * 8 7 5 32 32 H 1.08001 * 120.06947 * 0.02562 * 16 15 13 33 33 H 1.09004 * 109.46927 * 269.72138 * 18 17 16 34 34 H 1.08998 * 109.47431 * 29.72812 * 18 17 16 35 35 H 1.09007 * 109.46816 * 149.73100 * 18 17 16 36 36 H 1.09009 * 109.46679 * 90.00587 * 20 19 17 37 37 H 1.09002 * 109.46979 * 209.99575 * 20 19 17 38 38 H 1.08991 * 109.47676 * 330.00458 * 20 19 17 39 39 H 1.08000 * 119.93184 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1898 1.5505 1.1797 6 1 4.9868 0.8579 1.4069 7 6 3.8595 2.5518 2.0860 8 7 4.3780 2.5426 3.2930 9 14 2.6782 3.9103 1.5873 10 1 1.3044 3.5579 2.0274 11 1 3.0913 5.1851 2.2274 12 1 2.7000 4.0680 0.1109 13 6 4.1784 1.3361 -1.1631 14 8 3.5707 1.2794 -2.2149 15 6 5.6542 1.2882 -1.1598 16 6 6.3870 2.2771 -0.4989 17 6 7.7648 2.2260 -0.4993 18 6 8.5562 3.2887 0.2186 19 6 8.4231 1.1984 -1.1528 20 6 9.9294 1.1507 -1.1486 21 6 7.7055 0.2155 -1.8093 22 6 6.3247 0.2534 -1.8176 23 17 5.4249 -0.9815 -2.6416 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 4.1479 3.2413 3.9251 32 1 5.8753 3.0794 0.0118 33 1 8.7719 4.1072 -0.4681 34 1 7.9775 3.6651 1.0622 35 1 9.4917 2.8624 0.5810 36 1 10.2723 0.5786 -0.2864 37 1 10.2804 0.6740 -2.0638 38 1 10.3249 2.1648 -1.0923 39 1 8.2257 -0.5831 -2.3174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272676708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:16:46 Heat of formation + Delta-G solvation = -27.815771 kcal Electronic energy + Delta-G solvation = -22199.732405 eV Core-core repulsion = 18939.790280 eV Total energy + Delta-G solvation = -3259.942124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.108 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.70423 -38.24578 -36.05744 -35.24801 -33.26980 -32.53976 -31.84074 -31.48110 -27.73898 -26.33765 -25.74795 -24.64692 -22.00649 -21.54558 -20.74191 -19.02176 -17.46877 -16.27025 -15.84377 -15.44797 -15.03101 -14.49540 -14.25962 -14.02310 -13.71832 -13.43856 -13.12474 -13.01718 -12.68779 -12.59592 -12.40189 -12.33583 -12.13423 -11.84457 -11.62865 -11.48369 -11.13718 -10.99467 -10.98340 -10.78542 -10.57114 -10.38336 -10.36699 -10.07328 -9.84980 -9.26564 -8.72429 -8.31937 -7.97999 -7.70701 -6.49249 -4.24548 1.44610 1.70848 2.64547 3.01548 3.15977 3.24392 3.57034 4.02001 4.10614 4.40507 4.85967 5.02898 5.16451 5.34799 5.44806 5.51648 5.58269 5.62611 5.69376 5.78793 5.86149 5.91154 5.92907 6.02896 6.04911 6.10335 6.31314 6.34991 6.35908 6.42438 6.44528 6.59972 6.75646 6.79931 6.88473 6.95750 7.25873 7.40893 8.03705 8.23448 8.89729 9.24524 9.61235 10.59698 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.013730 B = 0.007589 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.910367 B = 3688.506346 C = 5236.885755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.106 3.894 4 N -0.460 5.460 5 C -0.339 4.339 6 H 0.101 0.899 7 C 0.071 3.929 8 N -0.863 5.863 9 Si 0.871 3.129 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.259 1.259 13 C 0.528 3.472 14 O -0.574 6.574 15 C -0.079 4.079 16 C -0.037 4.037 17 C -0.097 4.097 18 C -0.112 4.112 19 C -0.074 4.074 20 C -0.111 4.111 21 C -0.125 4.125 22 C -0.006 4.006 23 Cl -0.067 7.067 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.275 0.725 32 H 0.141 0.859 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.934 -1.158 -5.110 7.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.017 4.017 4 N -0.180 5.180 5 C -0.467 4.467 6 H 0.118 0.882 7 C -0.136 4.136 8 N -0.498 5.498 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.183 1.183 13 C 0.316 3.684 14 O -0.457 6.457 15 C -0.082 4.082 16 C -0.056 4.056 17 C -0.097 4.097 18 C -0.169 4.169 19 C -0.075 4.075 20 C -0.168 4.168 21 C -0.144 4.144 22 C -0.034 4.034 23 Cl -0.038 7.038 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.159 0.841 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.537 -1.199 -5.480 7.882 hybrid contribution -0.776 0.509 0.126 0.936 sum 4.761 -0.690 -5.354 7.198 Atomic orbital electron populations 1.21704 0.96315 1.01075 1.01366 1.21777 0.94846 0.97934 1.02536 1.21652 0.82558 0.96601 1.00888 1.43578 1.03886 1.64718 1.05815 1.19019 1.18849 1.15146 0.93671 0.88184 1.25460 0.96420 0.96799 0.94954 1.69648 1.42544 1.33485 1.04122 0.86944 0.81206 0.81773 0.80295 1.19836 1.21241 1.18274 1.18223 0.86342 0.79855 0.83939 1.90674 1.69382 1.54334 1.31351 1.19746 0.94738 0.95291 0.98468 1.21214 0.92425 0.97914 0.94025 1.19734 0.93710 0.96958 0.99278 1.20788 0.99581 0.96582 0.99910 1.19666 0.95771 0.94405 0.97642 1.20792 0.91111 1.02645 1.02212 1.20631 0.91261 1.00039 1.02441 1.20825 0.91699 0.92011 0.98826 1.98347 1.75506 1.52709 1.77218 0.93012 0.93003 0.93035 0.91861 0.91427 0.91611 0.91639 0.91439 0.84142 0.91565 0.90864 0.91548 0.91117 0.91760 0.91235 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.13 -2.58 6.22 -26.73 -0.17 -2.75 16 3 C 0.11 2.33 3.80 -4.04 -0.02 2.32 16 4 N -0.46 -11.07 2.02 -115.95 -0.23 -11.30 16 5 C -0.34 -8.60 7.15 -15.00 -0.11 -8.71 16 6 H 0.10 2.77 7.78 -52.49 -0.41 2.36 16 7 C 0.07 1.81 5.40 -17.45 -0.09 1.72 16 8 N -0.86 -22.92 13.95 55.50 0.77 -22.14 16 9 Si 0.87 19.90 24.87 -169.99 -4.23 15.67 16 10 H -0.27 -6.05 6.91 56.52 0.39 -5.65 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.26 -6.04 7.01 56.52 0.40 -5.64 16 13 C 0.53 12.68 6.57 -12.42 -0.08 12.60 16 14 O -0.57 -14.63 15.73 5.27 0.08 -14.54 16 15 C -0.08 -1.71 4.99 -104.94 -0.52 -2.23 16 16 C -0.04 -0.74 8.00 -39.17 -0.31 -1.06 16 17 C -0.10 -1.61 5.87 -104.68 -0.61 -2.23 16 18 C -0.11 -1.51 9.17 36.00 0.33 -1.18 16 19 C -0.07 -1.13 5.89 -104.53 -0.62 -1.74 16 20 C -0.11 -1.22 9.17 36.01 0.33 -0.89 16 21 C -0.12 -2.03 9.46 -39.61 -0.37 -2.41 16 22 C -0.01 -0.12 6.34 -39.05 -0.25 -0.36 16 23 Cl -0.07 -1.27 27.32 -51.86 -1.42 -2.68 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.07 1.46 4.28 -51.93 -0.22 1.24 16 30 H 0.07 1.45 7.55 -51.93 -0.39 1.06 16 31 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.14 2.97 7.34 -52.49 -0.39 2.58 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 35 H 0.07 0.76 6.70 -51.93 -0.35 0.42 16 36 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 38 H 0.07 0.67 6.69 -51.93 -0.35 0.33 16 39 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -28.49 332.76 -7.61 -36.09 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.48 Total: 2.74 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -2.13 Total: -8.86 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.54 Total: -33.44 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.08 Total: -14.54 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.23 Total: 15.67 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -1.42 Total: -2.68 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.49 -7.61 -36.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272676708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.279 kcal (2) G-P(sol) polarization free energy of solvation -28.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds