Wall clock time and date at job start Fri Apr 10 2020 20:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47073 * 2 1 4 4 N 1.46503 * 109.46731 * 180.02562 * 3 2 1 5 5 C 1.36889 * 119.99425 * 264.76011 * 4 3 2 6 6 H 1.08001 * 119.99412 * 130.58249 * 5 4 3 7 7 C 1.39036 * 120.00048 * 310.57875 * 5 4 3 8 8 N 1.31372 * 120.00126 * 170.23809 * 7 5 4 9 9 Si 1.86801 * 120.00092 * 350.23497 * 7 5 4 10 10 H 1.48505 * 109.46882 * 95.29968 * 9 7 5 11 11 H 1.48506 * 109.47096 * 215.29835 * 9 7 5 12 12 H 1.48498 * 109.47278 * 335.29665 * 9 7 5 13 13 C 1.34767 * 120.00225 * 84.76537 * 4 3 2 14 14 O 1.21604 * 120.00466 * 2.14047 * 13 4 3 15 15 C 1.47657 * 119.99917 * 182.14929 * 13 4 3 16 16 C 1.39698 * 120.15886 * 307.22663 * 15 13 4 17 17 C 1.37879 * 119.85839 * 179.97438 * 16 15 13 18 18 C 1.50697 * 119.90306 * 180.28285 * 17 16 15 19 19 C 1.38439 * 120.18467 * 0.02562 * 17 16 15 20 20 C 1.50706 * 119.82877 * 179.97438 * 19 17 16 21 21 C 1.38278 * 120.33346 * 359.97338 * 19 17 16 22 22 C 1.38132 * 120.13573 * 0.02562 * 21 19 17 23 23 Cl 1.73603 * 120.09316 * 180.02562 * 22 21 19 24 24 H 1.09005 * 109.46722 * 300.00011 * 1 2 3 25 25 H 1.08998 * 109.47574 * 59.99210 * 1 2 3 26 26 H 1.09003 * 109.47387 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46859 * 240.00398 * 2 1 3 28 28 H 1.08998 * 109.47574 * 120.00789 * 2 1 3 29 29 H 1.08999 * 109.46953 * 60.00455 * 3 2 1 30 30 H 1.09000 * 109.47210 * 300.00110 * 3 2 1 31 31 H 0.96989 * 120.00389 * 179.97438 * 8 7 5 32 32 H 1.08001 * 120.06947 * 0.02562 * 16 15 13 33 33 H 1.09004 * 109.46927 * 269.72138 * 18 17 16 34 34 H 1.08998 * 109.47431 * 29.72812 * 18 17 16 35 35 H 1.09007 * 109.46816 * 149.73100 * 18 17 16 36 36 H 1.09009 * 109.46679 * 90.00587 * 20 19 17 37 37 H 1.09002 * 109.46979 * 209.99575 * 20 19 17 38 38 H 1.08991 * 109.47676 * 330.00458 * 20 19 17 39 39 H 1.08000 * 119.93184 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1898 1.5505 1.1797 6 1 4.9868 0.8579 1.4069 7 6 3.8595 2.5518 2.0860 8 7 4.3780 2.5426 3.2930 9 14 2.6782 3.9103 1.5873 10 1 1.3044 3.5579 2.0274 11 1 3.0913 5.1851 2.2274 12 1 2.7000 4.0680 0.1109 13 6 4.1784 1.3361 -1.1631 14 8 3.5707 1.2794 -2.2149 15 6 5.6542 1.2882 -1.1598 16 6 6.3870 2.2771 -0.4989 17 6 7.7648 2.2260 -0.4993 18 6 8.5562 3.2887 0.2186 19 6 8.4231 1.1984 -1.1528 20 6 9.9294 1.1507 -1.1486 21 6 7.7055 0.2155 -1.8093 22 6 6.3247 0.2534 -1.8176 23 17 5.4249 -0.9815 -2.6416 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 4.1479 3.2413 3.9251 32 1 5.8753 3.0794 0.0118 33 1 8.7719 4.1072 -0.4681 34 1 7.9775 3.6651 1.0622 35 1 9.4917 2.8624 0.5810 36 1 10.2723 0.5786 -0.2864 37 1 10.2804 0.6740 -2.0638 38 1 10.3249 2.1648 -1.0923 39 1 8.2257 -0.5831 -2.3174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272676708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:16:46 Heat of formation + Delta-G solvation = -42.340832 kcal Electronic energy + Delta-G solvation = -22200.362258 eV Core-core repulsion = 18939.790280 eV Total energy + Delta-G solvation = -3260.571978 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.108 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.32032 -39.83033 -37.54645 -37.08253 -34.92132 -34.05357 -33.42261 -32.94957 -28.99386 -27.68289 -27.40905 -26.38035 -23.39210 -23.02294 -22.29908 -20.80694 -19.21062 -18.09891 -17.44564 -16.91221 -16.70580 -16.17768 -15.82556 -15.51114 -15.14518 -14.99983 -14.63846 -14.51553 -14.24966 -14.01084 -13.69341 -13.57809 -13.48248 -13.30701 -13.16594 -12.89541 -12.68365 -12.54722 -12.37843 -12.16627 -12.08544 -11.93087 -11.87250 -11.84516 -11.55771 -11.16590 -10.58252 -9.74785 -9.63803 -9.35041 -8.48966 -6.26558 0.00658 0.30485 1.16742 1.17552 1.27686 1.38402 1.83271 2.15520 2.47667 2.71318 2.94400 3.79784 3.86844 3.93326 4.01230 4.10878 4.22712 4.31620 4.37157 4.46771 4.53940 4.62067 4.73233 4.81369 4.86501 4.90628 4.92148 4.97014 5.08091 5.18645 5.21746 5.25141 5.27446 5.30375 5.39746 5.53388 5.62148 5.93823 6.06432 6.20125 6.92241 7.30262 7.69686 8.63534 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.013730 B = 0.007589 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.910367 B = 3688.506346 C = 5236.885755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.100 3.900 4 N -0.469 5.469 5 C -0.328 4.328 6 H 0.068 0.932 7 C 0.042 3.958 8 N -0.895 5.895 9 Si 0.917 3.083 10 H -0.257 1.257 11 H -0.278 1.278 12 H -0.271 1.271 13 C 0.524 3.476 14 O -0.597 6.597 15 C -0.118 4.118 16 C -0.057 4.057 17 C -0.098 4.098 18 C -0.109 4.109 19 C -0.061 4.061 20 C -0.110 4.110 21 C -0.120 4.120 22 C -0.022 4.022 23 Cl -0.071 7.071 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.281 0.719 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.393 -1.064 -5.494 9.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.164 4.164 3 C -0.022 4.022 4 N -0.189 5.189 5 C -0.456 4.456 6 H 0.086 0.914 7 C -0.163 4.163 8 N -0.531 5.531 9 Si 0.743 3.257 10 H -0.182 1.182 11 H -0.204 1.204 12 H -0.196 1.196 13 C 0.314 3.686 14 O -0.482 6.482 15 C -0.122 4.122 16 C -0.076 4.076 17 C -0.099 4.099 18 C -0.166 4.166 19 C -0.062 4.062 20 C -0.166 4.166 21 C -0.138 4.138 22 C -0.050 4.050 23 Cl -0.042 7.042 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.135 0.865 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.990 -1.109 -5.853 9.184 hybrid contribution -1.102 0.441 0.202 1.204 sum 5.887 -0.668 -5.651 8.188 Atomic orbital electron populations 1.21670 0.93023 1.02886 1.02184 1.21699 0.97679 0.95762 1.01237 1.21783 0.81581 0.98326 1.00554 1.43698 1.04742 1.65022 1.05480 1.18628 1.18391 1.14564 0.94019 0.91393 1.25854 0.97663 0.98035 0.94719 1.69705 1.44004 1.34484 1.04947 0.86215 0.80468 0.79930 0.79120 1.18172 1.20429 1.19596 1.18673 0.87653 0.78800 0.83477 1.90626 1.70345 1.55312 1.31887 1.19726 0.93496 0.97520 1.01410 1.21127 0.94133 0.97464 0.94886 1.20131 0.92546 0.98198 0.98982 1.20856 0.99839 0.96390 0.99487 1.20215 0.98342 0.92519 0.95108 1.20930 0.87223 1.04461 1.03995 1.21056 0.89911 1.00953 1.01914 1.21058 0.93005 0.91734 0.99165 1.98333 1.75984 1.52658 1.77256 0.92179 0.92183 0.90776 0.93294 0.92503 0.91692 0.91961 0.90935 0.86503 0.89327 0.92580 0.88783 0.89606 0.89585 0.89390 0.82257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 9.91 71.98 0.71 -3.50 16 2 C -0.13 -4.93 6.22 30.59 0.19 -4.74 16 3 C 0.10 4.49 3.80 86.38 0.33 4.81 16 4 N -0.47 -23.41 2.02 -639.01 -1.29 -24.70 16 5 C -0.33 -17.31 7.15 84.10 0.60 -16.71 16 6 H 0.07 3.98 7.78 -2.91 -0.02 3.96 16 7 C 0.04 2.20 5.40 84.95 0.46 2.65 16 8 N -0.89 -48.42 13.95 21.68 0.30 -48.11 16 9 Si 0.92 41.40 24.87 68.60 1.71 43.11 16 10 H -0.26 -10.88 6.91 99.48 0.69 -10.19 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.27 -12.71 7.01 99.48 0.70 -12.02 16 13 C 0.52 26.19 6.57 86.73 0.57 26.76 16 14 O -0.60 -31.47 15.73 -4.04 -0.06 -31.53 16 15 C -0.12 -5.29 4.99 -20.07 -0.10 -5.39 16 16 C -0.06 -2.36 8.00 22.54 0.18 -2.18 16 17 C -0.10 -3.18 5.87 -19.90 -0.12 -3.29 16 18 C -0.11 -2.72 9.17 71.23 0.65 -2.06 16 19 C -0.06 -1.69 5.89 -19.80 -0.12 -1.81 16 20 C -0.11 -1.88 9.17 71.24 0.65 -1.23 16 21 C -0.12 -3.67 9.46 22.25 0.21 -3.46 16 22 C -0.02 -0.86 6.34 22.61 0.14 -0.72 16 23 Cl -0.07 -2.73 27.32 -2.72 -0.07 -2.80 16 24 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.07 2.89 4.28 -2.39 -0.01 2.88 16 30 H 0.06 2.80 7.55 -2.39 -0.02 2.79 16 31 H 0.28 14.12 8.31 -92.72 -0.77 13.35 16 32 H 0.12 5.25 7.34 -2.91 -0.02 5.22 16 33 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.06 1.59 8.08 -2.39 -0.02 1.57 16 35 H 0.09 1.81 6.70 -2.38 -0.02 1.80 16 36 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.09 1.17 8.08 -2.39 -0.02 1.15 16 38 H 0.09 1.24 6.69 -2.39 -0.02 1.22 16 39 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -64.09 332.76 5.97 -58.12 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 1.02 Total: 16.77 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 4.37 Total: -10.85 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: -0.99 Total: -72.82 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.06 Total: -31.53 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.71 Total: 43.11 kcal Atomic # 17 Polarization: -2.73 SS G_CDS: -0.07 Total: -2.80 kcal Total: -64.09 5.97 -58.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272676708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.777 kcal (2) G-P(sol) polarization free energy of solvation -64.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds