Wall clock time and date at job start Fri Apr 10 2020 20:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50710 * 119.99557 * 2 1 4 4 N 1.46896 * 109.46981 * 124.10816 * 3 2 1 5 5 C 1.46901 * 111.00058 * 298.48289 * 4 3 2 6 6 C 1.50703 * 109.46873 * 288.26760 * 5 4 3 7 7 H 1.07996 * 120.00267 * 355.08359 * 6 5 4 8 8 C 1.37879 * 119.99917 * 175.09099 * 6 5 4 9 9 N 1.31511 * 120.00080 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99921 * 359.97438 * 8 6 5 11 11 H 1.48492 * 109.46921 * 90.00626 * 10 8 6 12 12 H 1.48499 * 109.47051 * 210.00528 * 10 8 6 13 13 H 1.48500 * 109.47135 * 330.00396 * 10 8 6 14 14 C 1.46899 * 111.00155 * 62.43372 * 4 3 2 15 15 C 1.53001 * 109.46877 * 66.04620 * 14 4 3 16 16 O 1.42896 * 109.47126 * 65.00310 * 15 14 4 17 17 C 1.35932 * 117.00157 * 180.02562 * 16 15 14 18 18 C 1.38709 * 120.05640 * 359.95490 * 17 16 15 19 19 C 1.38156 * 119.95534 * 180.02562 * 18 17 16 20 20 C 1.38271 * 120.07648 * 0.02562 * 19 18 17 21 21 C 1.38245 * 120.12030 * 0.02562 * 20 19 18 22 22 C 1.38256 * 120.04517 * 359.96017 * 21 20 19 23 23 Cl 1.73602 * 120.04325 * 180.02562 * 22 21 20 24 24 H 1.07998 * 119.99265 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.00180 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00180 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47054 * 4.10664 * 3 2 1 28 28 H 1.08999 * 109.46603 * 244.10424 * 3 2 1 29 29 H 1.08994 * 109.47102 * 48.26833 * 5 4 3 30 30 H 1.09003 * 109.46887 * 168.26817 * 5 4 3 31 31 H 0.96998 * 120.00379 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.47665 * 306.04809 * 14 4 3 33 33 H 1.09002 * 109.47469 * 186.04417 * 14 4 3 34 34 H 1.08996 * 109.47404 * 305.00037 * 15 14 4 35 35 H 1.09000 * 109.47198 * 184.99683 * 15 14 4 36 36 H 1.08002 * 120.01956 * 0.03906 * 18 17 16 37 37 H 1.07996 * 119.95464 * 180.29268 * 19 18 17 38 38 H 1.07996 * 119.93966 * 180.02562 * 20 19 18 39 39 H 1.08007 * 119.97944 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9809 1.3410 1.1467 5 6 2.2429 1.2577 2.4141 6 6 1.5123 2.5534 2.6561 7 1 1.6512 3.3857 1.9821 8 6 0.6667 2.6763 3.7382 9 7 0.0287 3.8068 3.9491 10 14 0.4260 1.2365 4.9038 11 1 1.4299 1.3104 5.9955 12 1 -0.9402 1.2917 5.4831 13 1 0.5969 -0.0370 4.1594 14 6 3.9850 0.2731 1.0511 15 6 4.8947 0.5346 -0.1510 16 8 5.6389 1.7348 0.0669 17 6 6.5006 2.1133 -0.9138 18 6 6.6278 1.3448 -2.0616 19 6 7.5047 1.7312 -3.0568 20 6 8.2559 2.8827 -2.9098 21 6 8.1325 3.6504 -1.7668 22 6 7.2563 3.2685 -0.7678 23 17 7.1008 4.2330 0.6673 24 1 -0.5399 -0.9354 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3574 2.1323 0.0736 28 1 2.6338 1.3954 -0.9245 29 1 1.5245 0.4395 2.3631 30 1 2.9421 1.0768 3.2305 31 1 -0.5665 3.8932 4.7101 32 1 3.4840 -0.6868 0.9256 33 1 4.5833 0.2542 1.9621 34 1 4.2873 0.6418 -1.0497 35 1 5.5825 -0.3019 -0.2749 36 1 6.0415 0.4452 -2.1772 37 1 7.6002 1.1354 -3.9525 38 1 8.9404 3.1828 -3.6894 39 1 8.7207 4.5491 -1.6542 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428856460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:16:43 Heat of formation + Delta-G solvation = 15.551819 kcal Electronic energy + Delta-G solvation = -21252.621420 eV Core-core repulsion = 17994.559856 eV Total energy + Delta-G solvation = -3258.061565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.16082 -38.08670 -36.93532 -36.17955 -32.80675 -32.43109 -30.94037 -30.44489 -29.12367 -27.19602 -25.21799 -23.20177 -22.47733 -21.37467 -20.78698 -18.76823 -18.39684 -16.72390 -16.42687 -16.14057 -15.94108 -15.10345 -14.81938 -14.51518 -14.16002 -14.00122 -13.95479 -13.44496 -13.07811 -12.92162 -12.32128 -12.13096 -11.89980 -11.76901 -11.45553 -11.36055 -11.17052 -11.04836 -10.80738 -10.71962 -10.61909 -10.43120 -10.29122 -9.81792 -9.30511 -8.97530 -8.86418 -8.51317 -8.15369 -7.33827 -5.99641 -3.95743 1.05106 1.26731 2.33616 2.72272 3.24933 3.30787 3.37956 3.39176 3.54682 4.45913 4.63283 4.68191 4.73103 4.97564 5.09612 5.17361 5.27399 5.31640 5.35143 5.39857 5.43654 5.55041 5.60830 5.86551 5.98184 6.02168 6.07288 6.13006 6.27891 6.30085 6.54704 6.59416 6.83515 7.01229 7.04212 7.22086 7.41641 7.65889 7.89840 8.04179 8.71218 9.11438 9.62580 11.13780 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.004248 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.338499 B = 6589.283286 C = 7567.195360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.190 4.190 3 C 0.086 3.914 4 N -0.510 5.510 5 C 0.159 3.841 6 C -0.500 4.500 7 H 0.081 0.919 8 C 0.069 3.931 9 N -0.902 5.902 10 Si 0.870 3.130 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.048 3.952 15 C 0.064 3.936 16 O -0.275 6.275 17 C 0.149 3.851 18 C -0.206 4.206 19 C -0.078 4.078 20 C -0.158 4.158 21 C -0.075 4.075 22 C -0.074 4.074 23 Cl -0.049 7.049 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.062 0.938 29 H -0.001 1.001 30 H 0.020 0.980 31 H 0.262 0.738 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.296 -7.141 -14.104 21.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.209 4.209 3 C -0.042 4.042 4 N -0.232 5.232 5 C 0.033 3.967 6 C -0.539 4.539 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.541 5.541 10 Si 0.698 3.302 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.081 4.081 15 C -0.011 4.011 16 O -0.187 6.187 17 C 0.101 3.899 18 C -0.225 4.225 19 C -0.096 4.096 20 C -0.176 4.176 21 C -0.093 4.093 22 C -0.101 4.101 23 Cl -0.020 7.020 24 H 0.104 0.896 25 H 0.120 0.880 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.017 0.983 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.357 -6.413 -13.631 20.809 hybrid contribution -0.738 -1.689 0.741 1.987 sum 13.619 -8.102 -12.889 20.427 Atomic orbital electron populations 1.23812 0.96101 1.01464 1.00087 1.23616 0.96855 0.99787 1.00689 1.21346 0.94793 0.94629 0.93444 1.62244 1.14706 1.42714 1.03535 1.20242 0.92523 0.97745 0.86163 1.20998 1.23764 0.97845 1.11281 0.90143 1.24865 0.95551 0.95410 0.97373 1.69891 1.29611 1.24945 1.29662 0.86940 0.77591 0.83901 0.81814 1.20263 1.21303 1.19252 1.22169 0.94274 0.94156 0.97497 1.23029 0.93224 0.84704 1.00162 1.86396 1.50781 1.42329 1.39176 1.18868 0.89959 0.92398 0.88647 1.21250 1.04214 1.02310 0.94744 1.20995 0.94477 0.96108 0.97999 1.20941 1.02284 0.96273 0.98122 1.20914 0.96528 0.99829 0.92063 1.20288 1.02513 0.94633 0.92662 1.98402 1.97177 1.69817 1.36613 0.89621 0.87998 0.88652 0.88986 0.91939 0.98321 0.96182 0.92789 0.93190 0.90073 0.91739 0.92296 0.84849 0.85544 0.85359 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 14.32 29.01 0.42 -2.49 16 2 C -0.19 -3.14 7.47 -36.02 -0.27 -3.41 16 3 C 0.09 1.58 5.46 -4.97 -0.03 1.55 16 4 N -0.51 -10.42 4.61 -237.51 -1.09 -11.52 16 5 C 0.16 3.83 3.69 -4.97 -0.02 3.81 16 6 C -0.50 -14.27 9.05 -34.44 -0.31 -14.59 16 7 H 0.08 2.53 7.90 -52.49 -0.41 2.12 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 9 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 10 Si 0.87 21.69 27.57 -169.99 -4.69 17.00 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 13 H -0.27 -6.41 6.40 56.52 0.36 -6.05 16 14 C 0.05 0.77 5.17 -3.82 -0.02 0.75 16 15 C 0.06 0.87 4.80 37.16 0.18 1.05 16 16 O -0.28 -4.48 9.54 -19.53 -0.19 -4.66 16 17 C 0.15 2.12 6.68 -39.19 -0.26 1.86 16 18 C -0.21 -2.33 9.04 -39.44 -0.36 -2.68 16 19 C -0.08 -0.73 10.04 -39.60 -0.40 -1.13 16 20 C -0.16 -1.47 10.04 -39.57 -0.40 -1.87 16 21 C -0.07 -0.82 9.83 -39.57 -0.39 -1.21 16 22 C -0.07 -1.03 6.33 -39.36 -0.25 -1.28 16 23 Cl -0.05 -0.76 28.51 -51.86 -1.48 -2.24 16 24 H 0.09 1.23 8.06 -52.49 -0.42 0.80 16 25 H 0.10 1.78 7.84 -52.49 -0.41 1.37 16 26 H 0.10 1.41 6.74 -52.49 -0.35 1.05 16 27 H 0.09 1.95 6.98 -51.93 -0.36 1.58 16 28 H 0.06 1.01 6.27 -51.93 -0.33 0.69 16 29 H 0.00 -0.02 5.49 -51.93 -0.29 -0.31 16 30 H 0.02 0.49 7.49 -51.93 -0.39 0.10 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.05 0.73 6.26 -51.93 -0.32 0.40 16 33 H 0.08 1.35 7.86 -51.93 -0.41 0.94 16 34 H 0.06 0.82 5.81 -51.93 -0.30 0.52 16 35 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 36 H 0.13 1.27 6.30 -52.49 -0.33 0.94 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 335.32 15.07 5.05 5.05 Total: -1.00 -32.02 335.32 -8.99 -41.01 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.17 Total: 0.17 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -2.20 Total: -17.71 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: -0.32 Total: -38.62 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.19 Total: -4.66 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.69 Total: 17.00 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.48 Total: -2.24 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.02 -8.99 -41.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428856460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.561 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds