Wall clock time and date at job start Fri Apr 10 2020 20:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50710 * 119.99557 * 2 1 4 4 N 1.46896 * 109.46981 * 124.10816 * 3 2 1 5 5 C 1.46901 * 111.00058 * 298.48289 * 4 3 2 6 6 C 1.50703 * 109.46873 * 288.26760 * 5 4 3 7 7 H 1.07996 * 120.00267 * 355.08359 * 6 5 4 8 8 C 1.37879 * 119.99917 * 175.09099 * 6 5 4 9 9 N 1.31511 * 120.00080 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99921 * 359.97438 * 8 6 5 11 11 H 1.48492 * 109.46921 * 90.00626 * 10 8 6 12 12 H 1.48499 * 109.47051 * 210.00528 * 10 8 6 13 13 H 1.48500 * 109.47135 * 330.00396 * 10 8 6 14 14 C 1.46899 * 111.00155 * 62.43372 * 4 3 2 15 15 C 1.53001 * 109.46877 * 66.04620 * 14 4 3 16 16 O 1.42896 * 109.47126 * 65.00310 * 15 14 4 17 17 C 1.35932 * 117.00157 * 180.02562 * 16 15 14 18 18 C 1.38709 * 120.05640 * 359.95490 * 17 16 15 19 19 C 1.38156 * 119.95534 * 180.02562 * 18 17 16 20 20 C 1.38271 * 120.07648 * 0.02562 * 19 18 17 21 21 C 1.38245 * 120.12030 * 0.02562 * 20 19 18 22 22 C 1.38256 * 120.04517 * 359.96017 * 21 20 19 23 23 Cl 1.73602 * 120.04325 * 180.02562 * 22 21 20 24 24 H 1.07998 * 119.99265 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.00180 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00180 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47054 * 4.10664 * 3 2 1 28 28 H 1.08999 * 109.46603 * 244.10424 * 3 2 1 29 29 H 1.08994 * 109.47102 * 48.26833 * 5 4 3 30 30 H 1.09003 * 109.46887 * 168.26817 * 5 4 3 31 31 H 0.96998 * 120.00379 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.47665 * 306.04809 * 14 4 3 33 33 H 1.09002 * 109.47469 * 186.04417 * 14 4 3 34 34 H 1.08996 * 109.47404 * 305.00037 * 15 14 4 35 35 H 1.09000 * 109.47198 * 184.99683 * 15 14 4 36 36 H 1.08002 * 120.01956 * 0.03906 * 18 17 16 37 37 H 1.07996 * 119.95464 * 180.29268 * 19 18 17 38 38 H 1.07996 * 119.93966 * 180.02562 * 20 19 18 39 39 H 1.08007 * 119.97944 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9809 1.3410 1.1467 5 6 2.2429 1.2577 2.4141 6 6 1.5123 2.5534 2.6561 7 1 1.6512 3.3857 1.9821 8 6 0.6667 2.6763 3.7382 9 7 0.0287 3.8068 3.9491 10 14 0.4260 1.2365 4.9038 11 1 1.4299 1.3104 5.9955 12 1 -0.9402 1.2917 5.4831 13 1 0.5969 -0.0370 4.1594 14 6 3.9850 0.2731 1.0511 15 6 4.8947 0.5346 -0.1510 16 8 5.6389 1.7348 0.0669 17 6 6.5006 2.1133 -0.9138 18 6 6.6278 1.3448 -2.0616 19 6 7.5047 1.7312 -3.0568 20 6 8.2559 2.8827 -2.9098 21 6 8.1325 3.6504 -1.7668 22 6 7.2563 3.2685 -0.7678 23 17 7.1008 4.2330 0.6673 24 1 -0.5399 -0.9354 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3574 2.1323 0.0736 28 1 2.6338 1.3954 -0.9245 29 1 1.5245 0.4395 2.3631 30 1 2.9421 1.0768 3.2305 31 1 -0.5665 3.8932 4.7101 32 1 3.4840 -0.6868 0.9256 33 1 4.5833 0.2542 1.9621 34 1 4.2873 0.6418 -1.0497 35 1 5.5825 -0.3019 -0.2749 36 1 6.0415 0.4452 -2.1772 37 1 7.6002 1.1354 -3.9525 38 1 8.9404 3.1828 -3.6894 39 1 8.7207 4.5491 -1.6542 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428856460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:16:43 Heat of formation + Delta-G solvation = -4.875169 kcal Electronic energy + Delta-G solvation = -21253.507201 eV Core-core repulsion = 17994.559856 eV Total energy + Delta-G solvation = -3258.947345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.11826 -39.36227 -38.11407 -37.23176 -34.80554 -33.91424 -31.92983 -31.60245 -30.35388 -28.82019 -26.71108 -24.43288 -23.36470 -22.84245 -22.16419 -20.16872 -19.33993 -18.85448 -17.48228 -17.27225 -16.93464 -16.52617 -16.12619 -15.90161 -15.51556 -15.46287 -14.86015 -14.71706 -14.50322 -14.16976 -14.04243 -13.38815 -13.29256 -13.00913 -12.76660 -12.56195 -12.39155 -12.37325 -12.28764 -12.18665 -11.90238 -11.74849 -11.72548 -11.62149 -11.39446 -10.76152 -10.22490 -9.83576 -9.09302 -8.88993 -8.25423 -6.27282 0.21023 0.41511 1.32636 1.33409 1.34949 1.40959 1.45285 2.28776 2.35191 2.71891 3.08547 3.25813 3.80580 3.91320 4.04098 4.09027 4.19667 4.23642 4.24872 4.36628 4.40235 4.50987 4.55547 4.70796 4.83293 4.85221 4.93263 4.98025 5.03129 5.19943 5.23227 5.32409 5.49292 5.58970 5.69279 5.79227 5.84519 6.07699 6.39364 6.50349 6.70204 6.79076 7.35660 8.91965 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.004248 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.338499 B = 6589.283286 C = 7567.195360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.190 4.190 3 C 0.090 3.910 4 N -0.534 5.534 5 C 0.173 3.827 6 C -0.505 4.505 7 H 0.029 0.971 8 C 0.008 3.992 9 N -0.952 5.952 10 Si 0.943 3.057 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.245 1.245 14 C 0.047 3.953 15 C 0.067 3.933 16 O -0.312 6.312 17 C 0.120 3.880 18 C -0.207 4.207 19 C -0.071 4.071 20 C -0.149 4.149 21 C -0.080 4.080 22 C -0.101 4.101 23 Cl -0.081 7.081 24 H 0.114 0.886 25 H 0.078 0.922 26 H 0.127 0.873 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.005 0.995 30 H 0.018 0.982 31 H 0.265 0.735 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.153 0.847 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.727 -10.568 -15.936 24.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.209 4.209 3 C -0.038 4.038 4 N -0.256 5.256 5 C 0.046 3.954 6 C -0.544 4.544 7 H 0.048 0.952 8 C -0.189 4.189 9 N -0.593 5.593 10 Si 0.767 3.233 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.169 1.169 14 C -0.081 4.081 15 C -0.008 4.008 16 O -0.225 6.225 17 C 0.073 3.927 18 C -0.226 4.226 19 C -0.089 4.089 20 C -0.167 4.167 21 C -0.099 4.099 22 C -0.128 4.128 23 Cl -0.053 7.053 24 H 0.132 0.868 25 H 0.097 0.903 26 H 0.145 0.855 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.022 0.978 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.171 0.829 37 H 0.181 0.819 38 H 0.180 0.820 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 15.811 -9.852 -15.496 24.232 hybrid contribution -1.094 -0.528 1.127 1.657 sum 14.717 -10.380 -14.369 23.039 Atomic orbital electron populations 1.23946 0.96358 1.01802 0.99864 1.23637 0.96839 0.99648 1.00780 1.21211 0.94312 0.94557 0.93692 1.62057 1.15366 1.45784 1.02431 1.19925 0.92307 0.94979 0.88198 1.21227 1.24299 0.98567 1.10309 0.95240 1.25812 0.95135 0.98557 0.99381 1.70063 1.30833 1.27670 1.30754 0.85773 0.77666 0.80588 0.79285 1.19454 1.20847 1.16895 1.22277 0.93385 0.93813 0.98632 1.23072 0.93508 0.85306 0.98886 1.86332 1.51811 1.43587 1.40733 1.19160 0.90563 0.93349 0.89599 1.21537 1.04620 1.02483 0.93913 1.21472 0.92933 0.96071 0.98455 1.21394 1.01996 0.95556 0.97797 1.21206 0.95975 1.00690 0.91979 1.20633 1.04494 0.95127 0.92586 1.98379 1.97426 1.70715 1.38743 0.86754 0.90303 0.85529 0.93324 0.89669 0.97775 0.96375 0.92640 0.90605 0.91013 0.90877 0.88811 0.82919 0.81943 0.81978 0.83241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.72 14.32 67.77 0.97 -4.75 16 2 C -0.19 -5.89 7.47 25.64 0.19 -5.70 16 3 C 0.09 3.32 5.46 85.56 0.47 3.79 16 4 N -0.53 -21.88 4.61 -905.35 -4.17 -26.05 16 5 C 0.17 8.34 3.69 85.56 0.32 8.66 16 6 C -0.51 -30.12 9.05 25.60 0.23 -29.89 16 7 H 0.03 2.00 7.90 -2.91 -0.02 1.97 16 8 C 0.01 0.46 5.47 84.66 0.46 0.92 16 9 N -0.95 -61.28 13.96 21.45 0.30 -60.98 16 10 Si 0.94 44.95 27.57 68.60 1.89 46.84 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 13 H -0.25 -10.73 6.40 99.48 0.64 -10.09 16 14 C 0.05 1.42 5.17 86.30 0.45 1.87 16 15 C 0.07 1.67 4.80 71.98 0.35 2.02 16 16 O -0.31 -10.06 9.54 -92.78 -0.89 -10.95 16 17 C 0.12 3.33 6.68 22.52 0.15 3.48 16 18 C -0.21 -4.07 9.04 22.36 0.20 -3.87 16 19 C -0.07 -1.06 10.04 22.26 0.22 -0.83 16 20 C -0.15 -2.26 10.04 22.28 0.22 -2.04 16 21 C -0.08 -1.64 9.83 22.28 0.22 -1.43 16 22 C -0.10 -2.83 6.33 22.41 0.14 -2.69 16 23 Cl -0.08 -2.65 28.51 -2.72 -0.08 -2.73 16 24 H 0.11 2.93 8.06 -2.91 -0.02 2.91 16 25 H 0.08 2.82 7.84 -2.91 -0.02 2.80 16 26 H 0.13 3.18 6.74 -2.91 -0.02 3.16 16 27 H 0.05 2.19 6.98 -2.39 -0.02 2.17 16 28 H 0.09 2.71 6.27 -2.39 -0.01 2.69 16 29 H 0.00 0.22 5.49 -2.39 -0.01 0.20 16 30 H 0.02 0.88 7.49 -2.39 -0.02 0.86 16 31 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 32 H 0.08 1.91 6.26 -2.38 -0.01 1.90 16 33 H 0.07 2.31 7.86 -2.39 -0.02 2.29 16 34 H 0.07 1.66 5.81 -2.39 -0.01 1.64 16 35 H 0.09 1.67 7.66 -2.39 -0.02 1.65 16 36 H 0.15 2.30 6.30 -2.91 -0.02 2.28 16 37 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 38 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -74.59 335.32 2.62 -71.96 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.97 Total: 12.36 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: 4.59 Total: -30.46 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -3.87 Total: -87.03 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.89 Total: -10.95 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.89 Total: 46.84 kcal Atomic # 17 Polarization: -2.65 SS G_CDS: -0.08 Total: -2.73 kcal Total: -74.59 2.62 -71.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428856460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.089 kcal (2) G-P(sol) polarization free energy of solvation -74.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds