Wall clock time and date at job start Fri Apr 10 2020 20:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29429 * 124.80279 * 2 1 4 4 C 1.30946 * 117.36367 * 179.97438 * 3 2 1 5 5 C 1.35668 * 114.18945 * 359.97438 * 4 3 2 6 6 C 1.46682 * 126.12769 * 180.02562 * 5 4 3 7 7 O 1.21685 * 120.00305 * 353.84274 * 6 5 4 8 8 N 1.34780 * 119.99538 * 173.84052 * 6 5 4 9 9 C 1.47419 * 125.64897 * 354.46693 * 8 6 5 10 10 C 1.54913 * 104.83242 * 204.09297 * 9 8 6 11 11 C 1.55164 * 101.57995 * 322.99296 * 10 9 8 12 12 H 1.08996 * 110.71848 * 277.13656 * 11 10 9 13 13 N 1.46501 * 110.71785 * 153.86331 * 11 10 9 14 14 C 1.36937 * 119.99654 * 91.47805 * 13 11 10 15 15 H 1.07998 * 120.00303 * 0.02562 * 14 13 11 16 16 C 1.38822 * 119.99587 * 179.97438 * 14 13 11 17 17 N 1.31618 * 119.99970 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99707 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47286 * 90.00015 * 18 16 14 20 20 H 1.48503 * 109.46849 * 210.00009 * 18 16 14 21 21 H 1.48502 * 109.47344 * 329.99973 * 18 16 14 22 22 C 1.47019 * 125.64227 * 174.42668 * 8 6 5 23 23 H 1.09001 * 109.88674 * 59.41183 * 22 8 6 24 24 C 1.52992 * 109.88467 * 298.39163 * 22 8 6 25 25 S 1.70954 * 124.80345 * 180.30997 * 2 1 3 26 26 H 1.09008 * 109.46985 * 89.97962 * 1 2 3 27 27 H 1.08996 * 109.46978 * 209.97748 * 1 2 3 28 28 H 1.09002 * 109.47285 * 329.97723 * 1 2 3 29 29 H 1.07996 * 122.90732 * 180.02562 * 4 3 2 30 30 H 1.08994 * 110.37285 * 322.93441 * 9 8 6 31 31 H 1.09000 * 110.36347 * 85.14928 * 9 8 6 32 32 H 1.08997 * 111.00161 * 81.06369 * 10 9 8 33 33 H 1.08999 * 111.00906 * 204.88268 * 10 9 8 34 34 H 0.96997 * 119.99988 * 271.47532 * 13 11 10 35 35 H 0.96996 * 119.99800 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.47322 * 61.45708 * 24 22 8 37 37 H 1.08999 * 109.47279 * 181.45650 * 24 22 8 38 38 H 1.08999 * 109.47294 * 301.45518 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5442 0.8932 0.0005 5 6 3.9352 -0.4059 0.0015 6 6 5.3189 -0.8926 0.0028 7 8 6.2406 -0.1062 -0.1099 8 7 5.5694 -2.2109 0.1290 9 6 4.5622 -3.2559 0.3875 10 6 5.3529 -4.4148 1.0444 11 6 6.6942 -4.3571 0.2665 12 1 6.6129 -4.8878 -0.6821 13 7 7.7866 -4.9030 1.0757 14 6 8.1060 -6.2317 0.9875 15 1 7.5529 -6.8770 0.3212 16 6 9.1415 -6.7489 1.7539 17 7 9.8166 -5.9621 2.5648 18 14 9.5776 -8.5613 1.6331 19 1 10.5980 -8.7553 0.5718 20 1 10.1217 -9.0272 2.9340 21 1 8.3599 -9.3422 1.2977 22 6 6.8922 -2.8448 0.0308 23 1 7.5579 -2.4332 0.7896 24 6 7.4808 -2.6079 -1.3614 25 16 2.4828 -1.4037 -0.0076 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3634 0.8898 0.5142 29 1 4.2433 1.7163 0.0010 30 1 3.7967 -2.8849 1.0689 31 1 4.1093 -3.5857 -0.5475 32 1 5.5092 -4.2282 2.1069 33 1 4.8503 -5.3692 0.8873 34 1 8.2837 -4.3234 1.6738 35 1 10.5398 -6.3236 3.1005 36 1 7.6056 -1.5376 -1.5257 37 1 8.4494 -3.1022 -1.4353 38 1 6.8066 -3.0150 -2.1149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986074708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:17:06 Heat of formation + Delta-G solvation = 26.130006 kcal Electronic energy + Delta-G solvation = -21362.227086 eV Core-core repulsion = 18138.960683 eV Total energy + Delta-G solvation = -3223.266402 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.110 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.34504 -39.58176 -37.39475 -34.23268 -32.66944 -31.65601 -31.02066 -29.56864 -28.39730 -25.34622 -24.67783 -23.31431 -22.87369 -21.17883 -19.90638 -18.79648 -18.29958 -17.31513 -16.56891 -16.24890 -15.66834 -15.16540 -14.74103 -14.55885 -13.99375 -13.77114 -13.67557 -13.51087 -13.07816 -12.96615 -12.78497 -12.61655 -12.22879 -12.08660 -11.90464 -11.58911 -11.24573 -11.10252 -10.88754 -10.68326 -10.34058 -10.13417 -10.04492 -9.86709 -9.69396 -9.58079 -9.13478 -8.98333 -8.50198 -7.09609 -5.86314 -3.17368 0.08422 0.99021 1.40770 2.32674 2.96382 3.17502 3.38146 3.43413 3.45281 3.84954 4.48775 4.51212 4.70390 4.86422 5.04770 5.07548 5.10270 5.18939 5.24108 5.37829 5.45123 5.49296 5.59539 5.70032 5.83929 5.91931 5.99977 6.05086 6.19735 6.36797 6.48623 6.53733 6.62492 6.82735 7.40315 7.57539 7.61118 8.13255 8.30561 9.42300 9.95632 10.30445 11.35658 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.031541 B = 0.003498 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.530160 B = 8001.722833 C = 8543.827916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.033 3.967 3 N -0.483 5.483 4 C 0.115 3.885 5 C -0.285 4.285 6 C 0.606 3.394 7 O -0.528 6.528 8 N -0.603 5.603 9 C 0.087 3.913 10 C -0.151 4.151 11 C 0.178 3.822 12 H 0.070 0.930 13 N -0.713 5.713 14 C -0.247 4.247 15 H 0.073 0.927 16 C -0.009 4.009 17 N -0.929 5.929 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.127 3.873 23 H 0.082 0.918 24 C -0.154 4.154 25 S 0.187 5.813 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.187 0.813 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.804 8.718 -6.036 21.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.242 4.242 3 N -0.198 5.198 4 C -0.042 4.042 5 C -0.409 4.409 6 C 0.393 3.607 7 O -0.407 6.407 8 N -0.336 5.336 9 C -0.038 4.038 10 C -0.192 4.192 11 C 0.066 3.934 12 H 0.088 0.912 13 N -0.353 5.353 14 C -0.378 4.378 15 H 0.091 0.909 16 C -0.205 4.205 17 N -0.576 5.576 18 Si 0.740 3.260 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.024 3.976 23 H 0.100 0.900 24 C -0.213 4.213 25 S 0.444 5.556 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.204 0.796 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.793 8.430 -6.139 21.493 hybrid contribution 0.959 -0.043 0.259 0.994 sum -17.834 8.387 -5.880 20.566 Atomic orbital electron populations 1.20495 0.85037 1.04442 1.04058 1.27743 1.02471 0.92864 1.01073 1.66267 1.04718 1.31685 1.17091 1.22143 0.90807 0.95467 0.95798 1.25802 0.97948 0.97766 1.19399 1.16318 0.85923 0.81137 0.77337 1.90830 1.44433 1.54433 1.50984 1.48406 1.10401 1.05035 1.69781 1.22577 0.91546 0.89450 1.00216 1.23585 0.98488 0.95920 1.01237 1.21242 0.88253 0.89258 0.94690 0.91207 1.42348 1.36380 1.08169 1.48372 1.19210 1.13027 0.85175 1.20372 0.90914 1.24779 0.98502 0.98079 0.99165 1.69664 1.24194 1.34457 1.29264 0.86175 0.78215 0.84698 0.76959 1.21607 1.21735 1.20658 1.22035 0.82683 0.94573 0.98338 0.90029 1.22045 1.01476 1.02219 0.95516 1.84269 0.95820 1.09918 1.65606 0.89311 0.89838 0.89171 0.79631 0.91018 0.91036 0.90391 0.90130 0.77896 0.93300 0.92123 0.90754 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.46 36.01 0.38 -0.09 16 2 C 0.03 0.32 7.39 -13.29 -0.10 0.22 16 3 N -0.48 -5.93 10.51 -11.50 -0.12 -6.05 16 4 C 0.12 1.50 11.10 -18.85 -0.21 1.29 16 5 C -0.29 -3.85 6.35 -37.09 -0.24 -4.08 16 6 C 0.61 9.89 7.56 -12.85 -0.10 9.79 16 7 O -0.53 -10.15 16.13 5.20 0.08 -10.07 16 8 N -0.60 -9.44 3.06 -164.55 -0.50 -9.94 16 9 C 0.09 1.13 5.30 -2.53 -0.01 1.12 16 10 C -0.15 -2.36 6.77 -24.58 -0.17 -2.53 16 11 C 0.18 3.28 3.14 -66.09 -0.21 3.07 16 12 H 0.07 1.28 7.80 -51.93 -0.41 0.87 16 13 N -0.71 -16.83 5.22 -51.64 -0.27 -17.10 16 14 C -0.25 -6.46 9.96 -15.06 -0.15 -6.61 16 15 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 16 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 17 N -0.93 -27.19 13.06 55.49 0.72 -26.46 16 18 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.13 2.22 3.18 -66.96 -0.21 2.01 16 23 H 0.08 1.61 7.72 -51.93 -0.40 1.21 16 24 C -0.15 -2.53 9.11 37.15 0.34 -2.20 16 25 S 0.19 1.86 18.89 -107.50 -2.03 -0.17 16 26 H 0.09 0.41 8.14 -51.92 -0.42 -0.02 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.19 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.07 0.83 5.81 -41.14 -0.24 0.60 16 31 H 0.07 0.81 7.96 -51.93 -0.41 0.39 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.39 9.91 7.57 -40.82 -0.31 9.61 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.06 1.03 7.07 -51.93 -0.37 0.66 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 328.68 15.07 4.95 4.95 Total: -1.00 -31.35 328.68 -8.02 -39.38 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.06 Total: 7.28 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -0.77 Total: 1.66 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.17 Total: -59.55 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.03 Total: -0.17 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.35 -8.02 -39.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986074708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.506 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds