Wall clock time and date at job start Fri Apr 10 2020 20:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29429 * 124.80279 * 2 1 4 4 C 1.30946 * 117.36367 * 179.97438 * 3 2 1 5 5 C 1.35668 * 114.18945 * 359.97438 * 4 3 2 6 6 C 1.46682 * 126.12769 * 180.02562 * 5 4 3 7 7 O 1.21685 * 120.00305 * 353.84274 * 6 5 4 8 8 N 1.34780 * 119.99538 * 173.84052 * 6 5 4 9 9 C 1.47419 * 125.64897 * 354.46693 * 8 6 5 10 10 C 1.54913 * 104.83242 * 204.09297 * 9 8 6 11 11 C 1.55164 * 101.57995 * 322.99296 * 10 9 8 12 12 H 1.08996 * 110.71848 * 277.13656 * 11 10 9 13 13 N 1.46501 * 110.71785 * 153.86331 * 11 10 9 14 14 C 1.36937 * 119.99654 * 91.47805 * 13 11 10 15 15 H 1.07998 * 120.00303 * 0.02562 * 14 13 11 16 16 C 1.38822 * 119.99587 * 179.97438 * 14 13 11 17 17 N 1.31618 * 119.99970 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99707 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47286 * 90.00015 * 18 16 14 20 20 H 1.48503 * 109.46849 * 210.00009 * 18 16 14 21 21 H 1.48502 * 109.47344 * 329.99973 * 18 16 14 22 22 C 1.47019 * 125.64227 * 174.42668 * 8 6 5 23 23 H 1.09001 * 109.88674 * 59.41183 * 22 8 6 24 24 C 1.52992 * 109.88467 * 298.39163 * 22 8 6 25 25 S 1.70954 * 124.80345 * 180.30997 * 2 1 3 26 26 H 1.09008 * 109.46985 * 89.97962 * 1 2 3 27 27 H 1.08996 * 109.46978 * 209.97748 * 1 2 3 28 28 H 1.09002 * 109.47285 * 329.97723 * 1 2 3 29 29 H 1.07996 * 122.90732 * 180.02562 * 4 3 2 30 30 H 1.08994 * 110.37285 * 322.93441 * 9 8 6 31 31 H 1.09000 * 110.36347 * 85.14928 * 9 8 6 32 32 H 1.08997 * 111.00161 * 81.06369 * 10 9 8 33 33 H 1.08999 * 111.00906 * 204.88268 * 10 9 8 34 34 H 0.96997 * 119.99988 * 271.47532 * 13 11 10 35 35 H 0.96996 * 119.99800 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.47322 * 61.45708 * 24 22 8 37 37 H 1.08999 * 109.47279 * 181.45650 * 24 22 8 38 38 H 1.08999 * 109.47294 * 301.45518 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5442 0.8932 0.0005 5 6 3.9352 -0.4059 0.0015 6 6 5.3189 -0.8926 0.0028 7 8 6.2406 -0.1062 -0.1099 8 7 5.5694 -2.2109 0.1290 9 6 4.5622 -3.2559 0.3875 10 6 5.3529 -4.4148 1.0444 11 6 6.6942 -4.3571 0.2665 12 1 6.6129 -4.8878 -0.6821 13 7 7.7866 -4.9030 1.0757 14 6 8.1060 -6.2317 0.9875 15 1 7.5529 -6.8770 0.3212 16 6 9.1415 -6.7489 1.7539 17 7 9.8166 -5.9621 2.5648 18 14 9.5776 -8.5613 1.6331 19 1 10.5980 -8.7553 0.5718 20 1 10.1217 -9.0272 2.9340 21 1 8.3599 -9.3422 1.2977 22 6 6.8922 -2.8448 0.0308 23 1 7.5579 -2.4332 0.7896 24 6 7.4808 -2.6079 -1.3614 25 16 2.4828 -1.4037 -0.0076 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3634 0.8898 0.5142 29 1 4.2433 1.7163 0.0010 30 1 3.7967 -2.8849 1.0689 31 1 4.1093 -3.5857 -0.5475 32 1 5.5092 -4.2282 2.1069 33 1 4.8503 -5.3692 0.8873 34 1 8.2837 -4.3234 1.6738 35 1 10.5398 -6.3236 3.1005 36 1 7.6056 -1.5376 -1.5257 37 1 8.4494 -3.1022 -1.4353 38 1 6.8066 -3.0150 -2.1149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986074708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:17:03 Heat of formation + Delta-G solvation = 4.757168 kcal Electronic energy + Delta-G solvation = -21363.153881 eV Core-core repulsion = 18138.960683 eV Total energy + Delta-G solvation = -3224.193198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.110 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.51742 -40.62279 -38.76271 -35.97588 -33.78342 -33.05316 -32.31897 -31.05898 -29.41599 -26.93451 -25.61554 -24.93093 -24.06819 -22.41438 -21.29456 -19.75197 -19.49878 -19.07283 -17.72308 -17.54270 -16.80864 -16.57284 -16.01951 -15.62361 -15.38810 -15.34534 -14.88433 -14.57739 -14.52987 -14.10244 -13.70287 -13.51383 -13.38795 -13.24678 -13.17226 -12.97673 -12.73761 -12.64626 -12.49097 -12.22084 -12.10425 -11.73777 -11.63641 -11.29936 -10.93089 -10.67434 -10.49372 -10.08267 -9.67412 -9.03645 -7.93215 -5.23648 -0.82355 0.13401 0.53621 1.33456 1.51029 1.52422 1.60552 1.73041 2.04275 2.58293 3.08174 3.33285 3.44129 3.63004 3.77962 3.93202 4.00381 4.11631 4.21210 4.25829 4.33367 4.44589 4.56275 4.61789 4.63249 4.69357 4.83450 4.93807 4.99362 5.16828 5.18217 5.18852 5.24697 5.40128 5.55761 6.26146 6.31567 6.57233 6.88207 7.33377 8.04253 8.28227 9.30241 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.031541 B = 0.003498 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.530160 B = 8001.722833 C = 8543.827916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.043 3.957 3 N -0.509 5.509 4 C 0.119 3.881 5 C -0.323 4.323 6 C 0.604 3.396 7 O -0.571 6.571 8 N -0.605 5.605 9 C 0.092 3.908 10 C -0.142 4.142 11 C 0.173 3.827 12 H 0.080 0.920 13 N -0.728 5.728 14 C -0.237 4.237 15 H 0.087 0.913 16 C -0.075 4.075 17 N -0.971 5.971 18 Si 0.973 3.027 19 H -0.290 1.290 20 H -0.301 1.301 21 H -0.263 1.263 22 C 0.132 3.868 23 H 0.048 0.952 24 C -0.145 4.145 25 S 0.242 5.758 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.181 0.819 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.371 0.629 35 H 0.250 0.750 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.419 7.576 -7.235 24.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.230 4.230 3 N -0.225 5.225 4 C -0.040 4.040 5 C -0.447 4.447 6 C 0.393 3.607 7 O -0.452 6.452 8 N -0.337 5.337 9 C -0.031 4.031 10 C -0.183 4.183 11 C 0.063 3.937 12 H 0.098 0.902 13 N -0.366 5.366 14 C -0.368 4.368 15 H 0.104 0.896 16 C -0.267 4.267 17 N -0.622 5.622 18 Si 0.802 3.198 19 H -0.218 1.218 20 H -0.228 1.228 21 H -0.187 1.187 22 C 0.028 3.972 23 H 0.067 0.933 24 C -0.203 4.203 25 S 0.500 5.500 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.113 0.887 29 H 0.198 0.802 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.203 0.797 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.494 7.261 -7.375 24.761 hybrid contribution 1.912 0.401 0.592 2.041 sum -20.582 7.662 -6.783 22.985 Atomic orbital electron populations 1.20779 0.81941 1.05951 1.05710 1.28523 1.04201 0.92312 0.97985 1.66357 1.04326 1.32812 1.18959 1.22199 0.91429 0.95461 0.94938 1.25531 0.97923 0.98970 1.22276 1.16688 0.86861 0.80773 0.76362 1.90796 1.46156 1.55393 1.52865 1.48406 1.10083 1.05485 1.69713 1.22718 0.90926 0.87588 1.01899 1.23392 0.97020 0.98085 0.99774 1.21436 0.88099 0.89430 0.94729 0.90193 1.42520 1.37761 1.07453 1.48908 1.19651 1.11971 0.86266 1.18952 0.89550 1.25584 0.99290 1.02055 0.99812 1.69835 1.25184 1.36185 1.30986 0.85143 0.78248 0.80256 0.76109 1.21751 1.22813 1.18749 1.21761 0.83484 0.94032 0.97925 0.93344 1.21941 1.01383 1.01521 0.95443 1.83868 0.93004 1.08487 1.64614 0.87346 0.87288 0.88700 0.80161 0.89084 0.87953 0.92328 0.88176 0.79692 0.94142 0.93145 0.91774 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.46 71.24 0.75 0.12 16 2 C 0.04 0.71 7.39 88.46 0.65 1.36 16 3 N -0.51 -11.60 10.51 -190.29 -2.00 -13.60 16 4 C 0.12 3.02 11.10 84.23 0.93 3.95 16 5 C -0.32 -8.36 6.35 23.88 0.15 -8.21 16 6 C 0.60 19.73 7.56 86.45 0.65 20.38 16 7 O -0.57 -22.80 16.13 -4.30 -0.07 -22.87 16 8 N -0.60 -18.46 3.06 -792.74 -2.43 -20.89 16 9 C 0.09 2.14 5.30 86.86 0.46 2.60 16 10 C -0.14 -4.16 6.77 31.99 0.22 -3.94 16 11 C 0.17 6.25 3.14 46.18 0.14 6.40 16 12 H 0.08 2.75 7.80 -2.39 -0.02 2.73 16 13 N -0.73 -34.78 5.22 -317.30 -1.66 -36.43 16 14 C -0.24 -12.30 9.96 84.04 0.84 -11.47 16 15 H 0.09 4.17 7.83 -2.91 -0.02 4.15 16 16 C -0.08 -4.16 5.50 84.86 0.47 -3.69 16 17 N -0.97 -58.56 13.06 21.65 0.28 -58.28 16 18 Si 0.97 44.44 29.55 68.60 2.03 46.47 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 20 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 22 C 0.13 4.68 3.18 45.34 0.14 4.82 16 23 H 0.05 2.03 7.72 -2.39 -0.02 2.01 16 24 C -0.14 -4.78 9.11 71.98 0.66 -4.12 16 25 S 0.24 3.99 18.89 -56.49 -1.07 2.92 16 26 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.18 4.54 8.06 -2.91 -0.02 4.52 16 30 H 0.09 1.80 5.81 -9.25 -0.05 1.75 16 31 H 0.10 1.83 7.96 -2.39 -0.02 1.81 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.37 19.83 7.57 -92.71 -0.70 19.13 16 35 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 36 H 0.05 1.76 7.07 -2.39 -0.02 1.74 16 37 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -70.24 328.68 1.49 -68.75 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.34 Total: 25.73 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 6.06 Total: 8.20 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -5.80 Total: -129.20 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.07 Total: -22.87 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.07 Total: 2.92 kcal Total: -70.24 1.49 -68.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986074708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.504 kcal (2) G-P(sol) polarization free energy of solvation -70.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds