Wall clock time and date at job start Fri Apr 10 2020 20:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35762 * 116.99648 * 2 1 4 4 C 1.38605 * 119.94591 * 0.02610 * 3 2 1 5 5 C 1.38189 * 120.72729 * 179.73587 * 4 3 2 6 6 C 1.39377 * 120.40384 * 0.49920 * 5 4 3 7 7 C 1.47212 * 120.24760 * 179.75359 * 6 5 4 8 8 C 1.40123 * 120.92620 * 64.70260 * 7 6 5 9 9 C 1.38104 * 118.42445 * 180.02562 * 8 7 6 10 10 C 1.38969 * 120.35678 * 0.02562 * 9 8 7 11 11 N 1.31154 * 122.04603 * 359.73288 * 10 9 8 12 12 C 1.33886 * 121.59255 * 0.53452 * 11 10 9 13 13 C 1.40566 * 120.28127 * 179.75089 * 12 11 10 14 14 H 1.07996 * 120.00084 * 187.35610 * 13 12 11 15 15 C 1.40064 * 119.99621 * 7.36566 * 13 12 11 16 16 N 1.30742 * 120.00433 * 7.18890 * 15 13 12 17 17 Si 1.86806 * 119.99592 * 187.18850 * 15 13 12 18 18 H 1.48505 * 109.46957 * 265.01224 * 17 15 13 19 19 H 1.48497 * 109.47185 * 25.01317 * 17 15 13 20 20 H 1.48497 * 109.47041 * 145.01536 * 17 15 13 21 21 C 1.41639 * 119.51050 * 359.48686 * 6 5 4 22 22 C 1.41082 * 133.48197 * 180.27203 * 21 6 5 23 23 N 1.30356 * 108.70763 * 180.02562 * 22 21 6 24 24 N 1.40042 * 109.61968 * 359.97438 * 23 22 21 25 25 H 0.97003 * 125.99378 * 180.02562 * 24 23 22 26 26 C 1.37203 * 108.00353 * 0.02562 * 24 23 22 27 27 H 1.08996 * 109.46914 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46922 * 299.99772 * 1 2 3 29 29 H 1.08991 * 109.47188 * 60.00086 * 1 2 3 30 30 H 1.07995 * 119.63055 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.80254 * 180.28225 * 5 4 3 32 32 H 1.07990 * 120.78737 * 0.02562 * 8 7 6 33 33 H 1.08002 * 119.81992 * 179.97438 * 9 8 7 34 34 H 1.07999 * 118.97522 * 179.97438 * 10 9 8 35 35 H 0.97001 * 120.00176 * 180.02562 * 16 15 13 36 36 H 1.08006 * 125.64193 * 359.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2893 2.3714 0.0005 5 6 1.8997 3.6111 0.0060 6 6 3.2897 3.7130 0.0006 7 6 3.9364 5.0354 0.0010 8 6 3.7957 5.9055 1.0904 9 6 4.4243 7.1340 1.0359 10 6 5.1758 7.4897 -0.0777 11 7 5.3221 6.6863 -1.1040 12 6 4.7437 5.4793 -1.1379 13 6 4.9147 4.6425 -2.2544 14 1 4.3533 3.7232 -2.3312 15 6 5.8134 5.0011 -3.2671 16 7 6.5948 6.0376 -3.1109 17 14 5.8954 3.9983 -4.8411 18 1 6.9768 2.9868 -4.7277 19 1 4.5966 3.3122 -5.0591 20 1 6.1782 4.8988 -5.9875 21 6 4.0756 2.5346 0.0005 22 6 5.4659 2.2949 0.0008 23 7 5.6682 1.0072 -0.0001 24 7 4.4380 0.3379 -0.0003 25 1 4.3123 -0.6239 -0.0006 26 6 3.4420 1.2815 -0.0002 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 0.2113 2.3068 0.0006 31 1 1.2960 4.5066 0.0110 32 1 3.2097 5.6222 1.9520 33 1 4.3305 7.8224 1.8628 34 1 5.6574 8.4561 -0.0968 35 1 7.2169 6.2861 -3.8125 36 1 6.2353 3.0530 0.0008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236476953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:17:27 Heat of formation + Delta-G solvation = 83.466954 kcal Electronic energy + Delta-G solvation = -23043.405898 eV Core-core repulsion = 19687.181861 eV Total energy + Delta-G solvation = -3356.224037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.106 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.01602 -38.80188 -37.97859 -35.78331 -33.75786 -32.09858 -30.67135 -30.14187 -29.34854 -28.03236 -26.99166 -25.51075 -22.78066 -22.13405 -21.27019 -21.11546 -20.16082 -18.09617 -17.51993 -16.83595 -15.76049 -15.72733 -15.57824 -15.00655 -14.55545 -14.31759 -14.19216 -13.99749 -13.70503 -12.93168 -12.81867 -12.37248 -12.18267 -11.93817 -11.77710 -11.56705 -11.29279 -11.12030 -10.99230 -10.83803 -10.64989 -10.43774 -10.40454 -9.93526 -9.45681 -9.43882 -8.33343 -8.12728 -7.67482 -7.57881 -6.90891 -6.55043 -4.59379 1.33175 1.97590 2.64042 2.94222 3.04626 3.07117 3.08880 3.17404 3.20922 3.42760 3.87107 4.28430 4.64654 5.02600 5.08309 5.17236 5.23126 5.40191 5.45487 5.62732 5.73924 5.81806 5.87491 6.06957 6.11826 6.28656 6.35992 6.53969 6.68131 6.74461 6.89022 7.02210 7.14772 7.18634 7.30260 7.51131 7.54774 7.73071 7.76736 7.97220 8.09490 8.17895 8.52458 8.84385 9.99862 10.16197 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.006545 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.354413 B = 4277.118239 C = 5276.301752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.328 6.328 3 C 0.069 3.931 4 C -0.152 4.152 5 C -0.142 4.142 6 C 0.085 3.915 7 C -0.250 4.250 8 C -0.026 4.026 9 C -0.328 4.328 10 C 0.138 3.862 11 N -0.492 5.492 12 C 0.276 3.724 13 C -0.404 4.404 14 H 0.087 0.913 15 C 0.072 3.928 16 N -0.705 5.705 17 Si 0.901 3.099 18 H -0.267 1.267 19 H -0.259 1.259 20 H -0.273 1.273 21 C -0.131 4.131 22 C 0.106 3.894 23 N -0.269 5.269 24 N -0.509 5.509 25 H 0.437 0.563 26 C 0.112 3.888 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.277 0.723 36 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.852 -7.329 3.572 11.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.243 6.243 3 C 0.021 3.979 4 C -0.174 4.174 5 C -0.162 4.162 6 C 0.081 3.919 7 C -0.255 4.255 8 C -0.050 4.050 9 C -0.351 4.351 10 C -0.030 4.030 11 N -0.204 5.204 12 C 0.152 3.848 13 C -0.434 4.434 14 H 0.105 0.895 15 C -0.155 4.155 16 N -0.325 5.325 17 Si 0.725 3.275 18 H -0.192 1.192 19 H -0.183 1.183 20 H -0.198 1.198 21 C -0.139 4.139 22 C -0.089 4.089 23 N -0.084 5.084 24 N -0.225 5.225 25 H 0.281 0.719 26 C -0.005 4.005 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.133 0.867 35 H 0.089 0.911 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -6.160 -8.121 2.710 10.547 hybrid contribution -1.451 -0.316 0.035 1.486 sum -7.611 -8.437 2.745 11.690 Atomic orbital electron populations 1.22929 0.78881 1.03171 1.01257 1.85904 1.20972 1.27194 1.90204 1.17767 0.87909 0.84737 1.07461 1.20814 0.98946 0.91537 1.06061 1.20822 0.93663 0.96284 1.05409 1.18150 0.91061 0.90958 0.91748 1.20229 1.12154 0.94395 0.98715 1.20829 0.95780 0.92960 0.95448 1.21011 1.12479 0.99483 1.02151 1.22443 0.93264 0.97493 0.89766 1.68730 1.23089 1.03926 1.24639 1.19604 0.86320 0.88959 0.89890 1.19519 1.18057 1.04968 1.00809 0.89455 1.26083 0.94570 0.94908 0.99968 1.70056 1.11840 1.18919 1.31710 0.86386 0.80120 0.80293 0.80742 1.19174 1.18299 1.19787 1.18769 0.93084 0.91598 1.10495 1.23868 0.95692 0.92733 0.96646 1.76754 1.03542 1.07322 1.20786 1.45915 1.01462 1.07677 1.67414 0.71949 1.18012 0.87823 0.90422 1.04228 0.88901 0.92919 0.92822 0.85603 0.85845 0.88648 0.88923 0.86690 0.91147 0.79047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.80 101.05 0.99 1.31 16 2 O -0.33 -4.72 10.49 -19.00 -0.20 -4.92 16 3 C 0.07 1.15 6.72 -38.84 -0.26 0.88 16 4 C -0.15 -2.39 9.00 -39.46 -0.36 -2.75 16 5 C -0.14 -2.55 9.72 -39.18 -0.38 -2.93 16 6 C 0.08 1.75 4.54 -104.53 -0.47 1.27 16 7 C -0.25 -5.69 5.39 -102.22 -0.55 -6.24 16 8 C -0.03 -0.56 9.90 -38.92 -0.39 -0.95 16 9 C -0.33 -7.01 10.05 -39.36 -0.40 -7.41 16 10 C 0.14 3.19 11.12 -17.57 -0.20 3.00 16 11 N -0.49 -12.86 8.00 -9.71 -0.08 -12.94 16 12 C 0.28 7.05 6.68 -82.77 -0.55 6.49 16 13 C -0.40 -10.21 8.13 -38.02 -0.31 -10.52 16 14 H 0.09 2.19 6.48 -52.49 -0.34 1.85 16 15 C 0.07 1.76 5.47 -17.33 -0.09 1.66 16 16 N -0.71 -17.85 11.58 55.55 0.64 -17.20 16 17 Si 0.90 18.49 29.57 -169.99 -5.03 13.46 16 18 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 19 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 C -0.13 -2.67 4.99 -106.70 -0.53 -3.21 16 22 C 0.11 2.13 11.39 -17.10 -0.19 1.93 16 23 N -0.27 -5.14 12.59 30.80 0.39 -4.75 16 24 N -0.51 -8.80 7.45 32.42 0.24 -8.56 16 25 H 0.44 6.15 8.96 -182.64 -1.64 4.51 16 26 C 0.11 2.08 7.26 -84.04 -0.61 1.47 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.46 7.65 -51.93 -0.40 0.07 16 29 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 30 H 0.13 1.55 6.24 -52.49 -0.33 1.22 16 31 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 32 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 35 H 0.28 6.37 8.29 -40.82 -0.34 6.03 16 36 H 0.19 3.87 8.06 -52.48 -0.42 3.45 16 LS Contribution 314.87 15.07 4.75 4.75 Total: -1.00 -29.04 314.87 -8.36 -37.40 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -4.77 Total: 8.73 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -4.30 Total: -15.97 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 1.19 Total: -43.45 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.20 Total: -4.92 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.04 -8.36 -37.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236476953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.864 kcal (2) G-P(sol) polarization free energy of solvation -29.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds