Wall clock time and date at job start Fri Apr 10 2020 20:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99947 * 2 1 4 4 H 1.48505 * 109.47374 * 269.99925 * 3 2 1 5 5 H 1.48502 * 109.47442 * 29.99693 * 3 2 1 6 6 H 1.48501 * 109.47297 * 150.00237 * 3 2 1 7 7 C 1.37878 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99761 * 183.67102 * 7 2 1 9 9 C 1.50704 * 119.99724 * 3.66242 * 7 2 1 10 10 C 1.52993 * 115.55297 * 324.39460 * 9 7 2 11 11 N 1.46502 * 109.46903 * 185.89448 * 10 9 7 12 12 C 1.29670 * 119.99969 * 114.50491 * 11 10 9 13 13 C 1.46903 * 120.00010 * 184.88588 * 12 11 10 14 14 C 1.39571 * 120.72987 * 354.78490 * 13 12 11 15 15 O 1.35614 * 119.79949 * 0.28223 * 14 13 12 16 16 C 1.39512 * 120.39865 * 180.02562 * 14 13 12 17 17 C 1.35855 * 121.78171 * 0.02762 * 16 14 13 18 18 C 1.40638 * 120.79939 * 359.96802 * 17 16 14 19 19 C 1.40518 * 121.23700 * 180.02562 * 18 17 16 20 20 C 1.36181 * 119.65037 * 179.97438 * 19 18 17 21 21 C 1.39248 * 121.00213 * 0.05685 * 20 19 18 22 22 C 1.36344 * 120.88750 * 359.96970 * 21 20 19 23 23 C 1.39990 * 119.61955 * 0.02562 * 22 21 20 24 24 C 1.53002 * 117.49109 * 110.06590 * 9 7 2 25 25 C 1.53007 * 117.49376 * 178.71979 * 9 7 2 26 26 H 0.97000 * 119.99725 * 5.00137 * 1 2 3 27 27 H 1.08998 * 109.47542 * 65.89138 * 10 9 7 28 28 H 1.09003 * 109.47271 * 305.89064 * 10 9 7 29 29 H 1.08005 * 119.99865 * 4.88436 * 12 11 10 30 30 H 0.96703 * 113.99713 * 269.72025 * 15 14 13 31 31 H 1.07996 * 119.11119 * 179.97438 * 16 14 13 32 32 H 1.07997 * 119.59958 * 179.97438 * 17 16 14 33 33 H 1.07999 * 120.16994 * 359.95934 * 19 18 17 34 34 H 1.08003 * 119.49659 * 180.02562 * 20 19 18 35 35 H 1.07994 * 119.56164 * 179.97438 * 21 20 19 36 36 H 1.07997 * 120.19143 * 180.02562 * 22 21 20 37 37 H 1.09007 * 117.49274 * 214.99918 * 24 9 7 38 38 H 1.08996 * 117.50640 * 0.02562 * 24 9 7 39 39 H 1.09000 * 117.49998 * 359.97438 * 25 9 7 40 40 H 1.08999 * 117.49567 * 144.98154 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0829 -1.1950 0.0594 9 6 1.2533 -2.4978 -0.0845 10 6 -0.0910 -2.5330 0.6451 11 7 -0.6370 -3.8916 0.5976 12 6 -0.7712 -4.5750 1.6913 13 6 -1.2169 -5.9736 1.6335 14 6 -1.6035 -6.5495 0.4224 15 8 -1.5632 -5.8145 -0.7166 16 6 -2.0262 -7.8782 0.3755 17 6 -2.0779 -8.6524 1.4907 18 6 -1.7025 -8.1360 2.7439 19 6 -1.7519 -8.9286 3.9031 20 6 -1.3804 -8.3956 5.1000 21 6 -0.9523 -7.0740 5.1946 22 6 -0.8928 -6.2767 4.0902 23 6 -1.2672 -6.7923 2.8437 24 6 1.3746 -3.3006 -1.3813 25 6 2.0768 -3.7871 -0.1111 26 1 -0.4850 0.8369 -0.0732 27 1 -0.7849 -1.8454 0.1617 28 1 0.0514 -2.2348 1.6838 29 1 -0.5552 -4.1160 2.6448 30 1 -2.3845 -5.3416 -0.9088 31 1 -2.3211 -8.3026 -0.5727 32 1 -2.4111 -9.6768 1.4140 33 1 -2.0829 -9.9550 3.8451 34 1 -1.4189 -9.0072 5.9893 35 1 -0.6636 -6.6750 6.1557 36 1 -0.5587 -5.2533 4.1765 37 1 0.4965 -3.8539 -1.7146 38 1 1.9980 -2.8861 -2.1735 39 1 3.1618 -3.6923 -0.0683 40 1 1.6608 -4.6603 0.3916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797397607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:11 Heat of formation + Delta-G solvation = 56.263085 kcal Electronic energy + Delta-G solvation = -22707.164928 eV Core-core repulsion = 19453.301586 eV Total energy + Delta-G solvation = -3253.863342 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.24857 -37.98806 -37.05954 -35.00415 -34.52052 -32.25674 -32.06089 -29.84375 -28.88581 -26.33328 -25.43932 -23.39657 -22.86747 -22.27148 -20.99485 -19.65716 -18.58463 -18.42373 -17.18960 -16.51796 -16.23900 -15.57955 -14.92407 -14.57044 -14.56021 -14.10386 -13.88562 -13.79106 -13.45179 -13.25627 -12.95760 -12.54027 -12.41182 -12.13351 -11.46077 -11.34469 -11.16136 -11.08003 -10.92311 -10.84976 -10.48039 -10.39466 -10.18355 -10.09120 -9.59568 -9.23820 -8.90086 -8.64697 -8.46884 -8.32835 -8.03240 -7.46599 -6.07627 -4.16413 0.40789 1.02803 1.80461 2.78573 3.24052 3.31086 3.32389 3.34805 4.14561 4.30552 4.36793 4.59756 4.75659 4.84584 4.97805 5.01369 5.02966 5.20208 5.34380 5.41807 5.46876 5.64137 5.78996 5.91364 6.01655 6.13112 6.21468 6.29923 6.36251 6.46823 6.50424 6.54406 6.59987 6.69772 6.84460 6.87803 6.93746 7.05284 7.19958 7.40373 7.55220 7.65342 7.98007 8.07808 8.34521 8.65018 8.84541 9.45114 10.90648 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.003781 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.370647 B = 7404.112719 C = 8113.466098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.483 4.483 8 H 0.063 0.937 9 C 0.057 3.943 10 C 0.073 3.927 11 N -0.453 5.453 12 C 0.117 3.883 13 C -0.065 4.065 14 C 0.141 3.859 15 O -0.465 6.465 16 C -0.137 4.137 17 C -0.097 4.097 18 C -0.062 4.062 19 C -0.104 4.104 20 C -0.124 4.124 21 C -0.117 4.117 22 C -0.103 4.103 23 C -0.023 4.023 24 C -0.189 4.189 25 C -0.211 4.211 26 H 0.263 0.737 27 H 0.139 0.861 28 H 0.028 0.972 29 H 0.090 0.910 30 H 0.387 0.613 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.281 -15.860 7.387 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.521 4.521 8 H 0.081 0.919 9 C 0.056 3.944 10 C -0.054 4.054 11 N -0.162 5.162 12 C -0.092 4.092 13 C -0.066 4.066 14 C 0.092 3.908 15 O -0.274 6.274 16 C -0.155 4.155 17 C -0.116 4.116 18 C -0.062 4.062 19 C -0.122 4.122 20 C -0.142 4.142 21 C -0.135 4.135 22 C -0.121 4.121 23 C -0.024 4.024 24 C -0.227 4.227 25 C -0.249 4.249 26 H 0.073 0.927 27 H 0.156 0.844 28 H 0.046 0.954 29 H 0.107 0.893 30 H 0.244 0.756 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.942 -15.767 6.431 18.388 hybrid contribution 0.295 1.324 0.773 1.561 sum -6.647 -14.442 7.203 17.455 Atomic orbital electron populations 1.69712 1.05957 1.26822 1.50239 1.25010 0.94973 0.99349 0.94154 0.86441 0.79746 0.82715 0.78299 1.20442 1.21075 1.19783 1.20668 0.92734 0.88890 1.49787 0.91905 1.18909 0.91189 0.89548 0.94755 1.22516 0.98166 0.85369 0.99358 1.71979 1.04755 1.10007 1.29429 1.23571 0.99121 0.91786 0.94696 1.20361 1.01826 0.93064 0.91392 1.18581 0.96791 0.89938 0.85514 1.84824 1.40328 1.64368 1.37922 1.21048 1.01105 0.94157 0.99192 1.20769 0.99953 0.99559 0.91306 1.17962 1.01012 0.93124 0.94093 1.20972 1.00090 0.99237 0.91930 1.20797 1.00082 0.95626 0.97718 1.20875 0.99932 0.94091 0.98628 1.21010 0.99077 1.00419 0.91569 1.18818 0.98572 0.92501 0.92558 1.22921 1.01680 1.06191 0.91946 1.22867 0.97406 1.00062 1.04544 0.92650 0.84351 0.95391 0.89325 0.75610 0.85486 0.85591 0.85746 0.86219 0.85981 0.85198 0.90081 0.91374 0.91435 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.39 10.32 55.43 0.57 -23.82 16 2 C 0.07 1.81 5.39 -17.82 -0.10 1.71 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.48 -13.41 9.06 -34.44 -0.31 -13.72 16 8 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 9 C 0.06 1.48 2.45 -155.66 -0.38 1.10 16 10 C 0.07 1.80 5.44 -4.04 -0.02 1.78 16 11 N -0.45 -9.56 6.60 -59.20 -0.39 -9.95 16 12 C 0.12 2.17 9.72 -14.96 -0.15 2.02 16 13 C -0.07 -1.06 6.06 -102.70 -0.62 -1.68 16 14 C 0.14 2.16 6.71 -38.61 -0.26 1.90 16 15 O -0.46 -7.55 11.39 -18.54 -0.21 -7.76 16 16 C -0.14 -1.70 9.81 -39.96 -0.39 -2.10 16 17 C -0.10 -1.09 9.70 -39.53 -0.38 -1.47 16 18 C -0.06 -0.77 5.74 -106.85 -0.61 -1.39 16 19 C -0.10 -1.07 9.77 -39.46 -0.39 -1.45 16 20 C -0.12 -1.21 9.94 -39.95 -0.40 -1.61 16 21 C -0.12 -1.26 9.96 -39.89 -0.40 -1.65 16 22 C -0.10 -1.32 9.46 -39.61 -0.37 -1.70 16 23 C -0.02 -0.33 5.90 -104.77 -0.62 -0.95 16 24 C -0.19 -4.67 9.65 -26.69 -0.26 -4.92 16 25 C -0.21 -5.09 9.61 -26.69 -0.26 -5.35 16 26 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 27 H 0.14 3.71 5.94 -51.93 -0.31 3.40 16 28 H 0.03 0.70 7.69 -51.93 -0.40 0.30 16 29 H 0.09 1.55 6.24 -52.48 -0.33 1.22 16 30 H 0.39 4.98 9.06 45.56 0.41 5.39 16 31 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.13 1.60 6.44 -52.49 -0.34 1.27 16 37 H 0.08 1.97 7.79 -51.92 -0.40 1.57 16 38 H 0.07 1.67 8.14 -51.93 -0.42 1.24 16 39 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 40 H 0.07 1.61 7.11 -51.93 -0.37 1.24 16 LS Contribution 336.51 15.07 5.07 5.07 Total: -1.00 -30.25 336.51 -10.13 -40.39 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -4.24 Total: 9.68 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: -5.91 Total: -29.47 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.18 Total: -33.77 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.21 Total: -7.76 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.25 -10.13 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797397607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.648 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds