Wall clock time and date at job start Fri Apr 10 2020 20:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99947 * 2 1 4 4 H 1.48505 * 109.47374 * 269.99925 * 3 2 1 5 5 H 1.48502 * 109.47442 * 29.99693 * 3 2 1 6 6 H 1.48501 * 109.47297 * 150.00237 * 3 2 1 7 7 C 1.37878 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99761 * 183.67102 * 7 2 1 9 9 C 1.50704 * 119.99724 * 3.66242 * 7 2 1 10 10 C 1.52993 * 115.55297 * 324.39460 * 9 7 2 11 11 N 1.46502 * 109.46903 * 185.89448 * 10 9 7 12 12 C 1.29670 * 119.99969 * 114.50491 * 11 10 9 13 13 C 1.46903 * 120.00010 * 184.88588 * 12 11 10 14 14 C 1.39571 * 120.72987 * 354.78490 * 13 12 11 15 15 O 1.35614 * 119.79949 * 0.28223 * 14 13 12 16 16 C 1.39512 * 120.39865 * 180.02562 * 14 13 12 17 17 C 1.35855 * 121.78171 * 0.02762 * 16 14 13 18 18 C 1.40638 * 120.79939 * 359.96802 * 17 16 14 19 19 C 1.40518 * 121.23700 * 180.02562 * 18 17 16 20 20 C 1.36181 * 119.65037 * 179.97438 * 19 18 17 21 21 C 1.39248 * 121.00213 * 0.05685 * 20 19 18 22 22 C 1.36344 * 120.88750 * 359.96970 * 21 20 19 23 23 C 1.39990 * 119.61955 * 0.02562 * 22 21 20 24 24 C 1.53002 * 117.49109 * 110.06590 * 9 7 2 25 25 C 1.53007 * 117.49376 * 178.71979 * 9 7 2 26 26 H 0.97000 * 119.99725 * 5.00137 * 1 2 3 27 27 H 1.08998 * 109.47542 * 65.89138 * 10 9 7 28 28 H 1.09003 * 109.47271 * 305.89064 * 10 9 7 29 29 H 1.08005 * 119.99865 * 4.88436 * 12 11 10 30 30 H 0.96703 * 113.99713 * 269.72025 * 15 14 13 31 31 H 1.07996 * 119.11119 * 179.97438 * 16 14 13 32 32 H 1.07997 * 119.59958 * 179.97438 * 17 16 14 33 33 H 1.07999 * 120.16994 * 359.95934 * 19 18 17 34 34 H 1.08003 * 119.49659 * 180.02562 * 20 19 18 35 35 H 1.07994 * 119.56164 * 179.97438 * 21 20 19 36 36 H 1.07997 * 120.19143 * 180.02562 * 22 21 20 37 37 H 1.09007 * 117.49274 * 214.99918 * 24 9 7 38 38 H 1.08996 * 117.50640 * 0.02562 * 24 9 7 39 39 H 1.09000 * 117.49998 * 359.97438 * 25 9 7 40 40 H 1.08999 * 117.49567 * 144.98154 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0829 -1.1950 0.0594 9 6 1.2533 -2.4978 -0.0845 10 6 -0.0910 -2.5330 0.6451 11 7 -0.6370 -3.8916 0.5976 12 6 -0.7712 -4.5750 1.6913 13 6 -1.2169 -5.9736 1.6335 14 6 -1.6035 -6.5495 0.4224 15 8 -1.5632 -5.8145 -0.7166 16 6 -2.0262 -7.8782 0.3755 17 6 -2.0779 -8.6524 1.4907 18 6 -1.7025 -8.1360 2.7439 19 6 -1.7519 -8.9286 3.9031 20 6 -1.3804 -8.3956 5.1000 21 6 -0.9523 -7.0740 5.1946 22 6 -0.8928 -6.2767 4.0902 23 6 -1.2672 -6.7923 2.8437 24 6 1.3746 -3.3006 -1.3813 25 6 2.0768 -3.7871 -0.1111 26 1 -0.4850 0.8369 -0.0732 27 1 -0.7849 -1.8454 0.1617 28 1 0.0514 -2.2348 1.6838 29 1 -0.5552 -4.1160 2.6448 30 1 -2.3845 -5.3416 -0.9088 31 1 -2.3211 -8.3026 -0.5727 32 1 -2.4111 -9.6768 1.4140 33 1 -2.0829 -9.9550 3.8451 34 1 -1.4189 -9.0072 5.9893 35 1 -0.6636 -6.6750 6.1557 36 1 -0.5587 -5.2533 4.1765 37 1 0.4965 -3.8539 -1.7146 38 1 1.9980 -2.8861 -2.1735 39 1 3.1618 -3.6923 -0.0683 40 1 1.6608 -4.6603 0.3916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797397607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:10 Heat of formation + Delta-G solvation = 39.465036 kcal Electronic energy + Delta-G solvation = -22707.893346 eV Core-core repulsion = 19453.301586 eV Total energy + Delta-G solvation = -3254.591760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.23101 -39.23169 -38.76354 -36.10923 -35.96702 -34.26995 -33.22251 -30.78562 -30.00682 -28.11706 -27.29073 -24.49294 -23.91550 -23.36073 -22.98456 -21.16013 -20.25691 -19.50958 -18.43642 -18.04445 -17.58770 -16.75094 -16.59866 -15.98530 -15.80668 -15.49920 -15.45505 -14.94740 -14.50134 -14.37935 -14.27620 -14.03790 -13.79865 -13.47990 -13.21084 -12.91658 -12.80247 -12.36820 -12.30388 -12.16562 -12.06312 -11.86855 -11.79575 -11.45986 -11.31212 -10.96913 -10.74397 -10.29923 -10.09121 -9.87594 -9.40764 -8.59298 -8.10616 -6.30134 -0.60212 0.08841 0.76654 1.40377 1.40781 1.51762 1.68253 2.16268 2.36862 2.95575 3.16614 3.20705 3.46408 3.60063 3.79703 3.82741 4.00846 4.17090 4.24334 4.32746 4.42279 4.46251 4.50481 4.59481 4.61137 4.71137 4.87053 4.94785 5.02177 5.09815 5.16228 5.20095 5.25881 5.34735 5.42502 5.52031 5.55791 5.58096 5.63915 5.65492 5.86598 5.96336 6.08974 6.30323 6.72065 6.97131 7.06540 7.34612 8.84813 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.003781 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.370647 B = 7404.112719 C = 8113.466098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.030 3.970 10 C 0.094 3.906 11 N -0.482 5.482 12 C 0.141 3.859 13 C -0.111 4.111 14 C 0.143 3.857 15 O -0.486 6.486 16 C -0.156 4.156 17 C -0.067 4.067 18 C -0.084 4.084 19 C -0.095 4.095 20 C -0.127 4.127 21 C -0.105 4.105 22 C -0.138 4.138 23 C -0.032 4.032 24 C -0.182 4.182 25 C -0.194 4.194 26 H 0.265 0.735 27 H 0.110 0.890 28 H 0.004 0.996 29 H 0.090 0.910 30 H 0.397 0.603 31 H 0.149 0.851 32 H 0.168 0.832 33 H 0.162 0.838 34 H 0.154 0.846 35 H 0.144 0.856 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.803 -18.771 8.791 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.035 4.035 11 N -0.191 5.191 12 C -0.068 4.068 13 C -0.113 4.113 14 C 0.094 3.906 15 O -0.297 6.297 16 C -0.174 4.174 17 C -0.086 4.086 18 C -0.084 4.084 19 C -0.112 4.112 20 C -0.145 4.145 21 C -0.123 4.123 22 C -0.156 4.156 23 C -0.034 4.034 24 C -0.220 4.220 25 C -0.232 4.232 26 H 0.075 0.925 27 H 0.128 0.872 28 H 0.022 0.978 29 H 0.107 0.893 30 H 0.256 0.744 31 H 0.167 0.833 32 H 0.186 0.814 33 H 0.179 0.821 34 H 0.172 0.828 35 H 0.162 0.838 36 H 0.137 0.863 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.473 -18.687 7.834 21.597 hybrid contribution 0.365 1.971 0.518 2.070 sum -7.108 -16.716 8.352 19.992 Atomic orbital electron populations 1.69898 1.07064 1.27615 1.50033 1.25779 0.95841 1.02437 0.93502 0.85426 0.78511 0.78531 0.78440 1.19864 1.20355 1.19409 1.20907 0.92643 0.90384 1.51240 0.92691 1.19087 0.92385 0.89715 0.95901 1.22007 0.97100 0.87278 0.97116 1.72018 1.08500 1.08448 1.30108 1.23958 0.95919 0.92849 0.94072 1.20318 1.05706 0.92085 0.93165 1.18967 0.95811 0.91089 0.84714 1.84758 1.41507 1.64975 1.38507 1.21208 1.02319 0.92932 1.00951 1.21273 0.96336 1.00880 0.90073 1.18321 1.01652 0.92617 0.95803 1.21406 0.98393 1.00491 0.90925 1.21229 0.98935 0.95276 0.99065 1.21243 0.97856 0.94512 0.98698 1.21071 1.01465 1.00762 0.92286 1.18978 0.98895 0.93457 0.92071 1.22811 1.01631 1.05850 0.91684 1.22762 0.97310 0.99250 1.03849 0.92505 0.87222 0.97794 0.89321 0.74401 0.83303 0.81415 0.82085 0.82787 0.83815 0.86255 0.90128 0.91544 0.91008 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.62 10.32 21.45 0.22 -51.40 16 2 C 0.02 1.34 5.39 84.65 0.46 1.80 16 3 Si 0.97 43.61 29.54 68.60 2.03 45.63 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.51 -29.55 9.06 25.60 0.23 -29.32 16 8 H 0.05 3.14 7.82 -2.91 -0.02 3.12 16 9 C 0.03 1.62 2.45 -52.93 -0.13 1.49 16 10 C 0.09 4.89 5.44 86.38 0.47 5.36 16 11 N -0.48 -21.58 6.60 -341.20 -2.25 -23.83 16 12 C 0.14 5.51 9.72 87.28 0.85 6.36 16 13 C -0.11 -3.71 6.06 -18.62 -0.11 -3.82 16 14 C 0.14 4.40 6.71 22.90 0.15 4.56 16 15 O -0.49 -16.25 11.39 -89.26 -1.02 -17.27 16 16 C -0.16 -3.57 9.81 22.02 0.22 -3.35 16 17 C -0.07 -1.26 9.70 22.30 0.22 -1.04 16 18 C -0.08 -1.85 5.74 -21.31 -0.12 -1.98 16 19 C -0.09 -1.50 9.77 22.35 0.22 -1.28 16 20 C -0.13 -1.94 9.94 22.03 0.22 -1.72 16 21 C -0.11 -2.01 9.96 22.07 0.22 -1.79 16 22 C -0.14 -3.52 9.46 22.25 0.21 -3.31 16 23 C -0.03 -0.91 5.90 -19.96 -0.12 -1.03 16 24 C -0.18 -9.25 9.65 30.62 0.30 -8.95 16 25 C -0.19 -9.63 9.61 30.62 0.29 -9.33 16 26 H 0.27 14.22 8.32 -92.71 -0.77 13.45 16 27 H 0.11 6.30 5.94 -2.39 -0.01 6.28 16 28 H 0.00 0.20 7.69 -2.39 -0.02 0.19 16 29 H 0.09 3.37 6.24 -2.91 -0.02 3.35 16 30 H 0.40 10.81 9.06 -74.06 -0.67 10.14 16 31 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.12 3.14 6.44 -2.91 -0.02 3.12 16 37 H 0.08 4.07 7.79 -2.38 -0.02 4.05 16 38 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.07 3.44 8.14 -2.39 -0.02 3.42 16 40 H 0.07 3.38 7.11 -2.39 -0.02 3.36 16 Total: -1.00 -68.30 336.51 2.94 -65.36 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.39 Total: 28.86 kcal Atomic # 6 Polarization: -50.92 SS G_CDS: 3.57 Total: -47.36 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -2.03 Total: -75.23 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -1.02 Total: -17.27 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -68.30 2.94 -65.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797397607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.827 kcal (2) G-P(sol) polarization free energy of solvation -68.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds