Wall clock time and date at job start Fri Apr 10 2020 20:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99343 * 2 1 4 4 C 1.53001 * 109.46653 * 184.86905 * 3 2 1 5 5 N 1.46893 * 109.47603 * 68.18228 * 4 3 2 6 6 C 1.46908 * 110.99904 * 293.83153 * 5 4 3 7 7 C 1.50698 * 109.46998 * 296.78312 * 6 5 4 8 8 H 1.07999 * 120.00040 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99905 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00110 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00292 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46762 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47066 * 119.99891 * 11 9 7 14 14 H 1.48495 * 109.47103 * 239.99869 * 11 9 7 15 15 C 1.46897 * 111.00157 * 57.78471 * 5 4 3 16 16 C 1.50699 * 109.46855 * 66.20712 * 15 5 4 17 17 C 1.38107 * 120.03722 * 258.63458 * 16 15 5 18 18 C 1.38283 * 120.08201 * 179.97438 * 17 16 15 19 19 C 1.38326 * 120.15697 * 0.04865 * 18 17 16 20 20 C 1.38064 * 120.08294 * 359.97304 * 19 18 17 21 21 C 1.38953 * 120.04584 * 78.36172 * 16 15 5 22 22 S 1.76202 * 120.07420 * 0.02562 * 21 16 15 23 23 C 1.81404 * 102.99684 * 179.97438 * 22 21 16 24 24 H 1.09007 * 109.46463 * 184.96925 * 1 2 3 25 25 H 1.08997 * 109.47244 * 304.96459 * 1 2 3 26 26 H 1.08997 * 109.47338 * 64.97508 * 1 2 3 27 27 H 1.08992 * 109.47403 * 64.86763 * 3 2 1 28 28 H 1.09003 * 109.47017 * 304.85930 * 3 2 1 29 29 H 1.09004 * 109.46739 * 308.17708 * 4 3 2 30 30 H 1.09002 * 109.47138 * 188.18557 * 4 3 2 31 31 H 1.09000 * 109.46789 * 56.78188 * 6 5 4 32 32 H 1.08993 * 109.47104 * 176.78220 * 6 5 4 33 33 H 0.96998 * 120.00064 * 180.02562 * 10 9 7 34 34 H 1.08998 * 109.46940 * 186.20512 * 15 5 4 35 35 H 1.08995 * 109.47150 * 306.20407 * 15 5 4 36 36 H 1.08003 * 119.96090 * 0.02562 * 17 16 15 37 37 H 1.07993 * 119.92352 * 180.02562 * 18 17 16 38 38 H 1.08001 * 119.95674 * 179.97438 * 19 18 17 39 39 H 1.08003 * 120.03945 * 180.02562 * 20 19 18 40 40 H 1.09003 * 109.46994 * 299.99765 * 23 22 21 41 41 H 1.08997 * 109.47121 * 59.99623 * 23 22 21 42 42 H 1.09003 * 109.46984 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5306 1.1869 -0.1224 5 7 3.8764 0.6805 -1.4572 6 6 3.4053 -0.6996 -1.6350 7 6 4.1071 -1.6005 -0.6517 8 1 4.8309 -1.1891 0.0362 9 6 3.8258 -2.9501 -0.6309 10 7 2.9446 -3.4512 -1.4690 11 14 4.6961 -4.0671 0.5875 12 1 5.6337 -3.2639 1.4128 13 1 3.6922 -4.7165 1.4682 14 1 5.4547 -5.1087 -0.1505 15 6 3.3434 1.5581 -2.5077 16 6 4.0361 2.8950 -2.4447 17 6 3.4051 3.9734 -1.8563 18 6 4.0401 5.2005 -1.7975 19 6 5.3084 5.3527 -2.3282 20 6 5.9451 4.2792 -2.9183 21 6 5.3126 3.0428 -2.9733 22 16 6.1240 1.6679 -3.7191 23 6 7.7166 2.3657 -4.2363 24 1 -0.3632 -1.0239 0.0890 25 1 -0.3633 0.5889 0.8421 26 1 -0.3634 0.4347 -0.9312 27 1 1.7592 1.8150 0.9303 28 1 1.6212 1.8764 -0.8433 29 1 3.9034 0.4979 0.6355 30 1 3.9844 2.1672 0.0230 31 1 2.3299 -0.7414 -1.4626 32 1 3.6237 -1.0301 -2.6504 33 1 2.7465 -4.4006 -1.4541 34 1 3.5176 1.1043 -3.4833 35 1 2.2727 1.6961 -2.3572 36 1 2.4149 3.8582 -1.4409 37 1 3.5445 6.0420 -1.3365 38 1 5.8011 6.3126 -2.2808 39 1 6.9356 4.3987 -3.3321 40 1 7.5450 3.1819 -4.9380 41 1 8.2487 2.7431 -3.3631 42 1 8.3133 1.5911 -4.7183 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611574191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:17:27 Heat of formation + Delta-G solvation = -1.042929 kcal Electronic energy + Delta-G solvation = -22369.799704 eV Core-core repulsion = 19248.895338 eV Total energy + Delta-G solvation = -3120.904366 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.32485 -37.81020 -35.64652 -32.56862 -31.30813 -31.12981 -28.99753 -28.60442 -26.92494 -25.79813 -24.35327 -22.61323 -22.60534 -21.27490 -19.39515 -17.29841 -16.36451 -16.01463 -15.85930 -15.66363 -15.01940 -14.70386 -14.35692 -14.21829 -13.97062 -13.90817 -13.55705 -13.39403 -12.96344 -12.46813 -12.37617 -12.11001 -11.79302 -11.54547 -11.39097 -11.12704 -11.00193 -10.95300 -10.88371 -10.58861 -10.48895 -10.08949 -9.80917 -9.57299 -9.48190 -8.98279 -8.89286 -8.63747 -8.18056 -7.08272 -6.85184 -5.78644 -3.74451 1.40468 1.50188 1.85149 2.76677 3.43875 3.50661 3.55597 3.83393 4.47732 4.62325 4.92583 4.99455 5.07994 5.13746 5.17112 5.26999 5.45319 5.54480 5.58941 5.62444 5.67245 5.74451 5.76401 5.88068 5.89375 5.94739 6.02967 6.13699 6.19550 6.27462 6.39432 6.42402 6.58762 6.72343 6.87123 7.05703 7.47147 7.81918 7.92909 8.00384 8.28377 8.44797 8.78972 9.29843 9.85306 11.33130 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.014603 B = 0.005701 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.947598 B = 4910.055471 C = 6248.336103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.341 6.341 3 C 0.023 3.977 4 C 0.063 3.937 5 N -0.515 5.515 6 C 0.181 3.819 7 C -0.481 4.481 8 H 0.057 0.943 9 C 0.056 3.944 10 N -0.901 5.901 11 Si 0.889 3.111 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.288 1.288 15 C 0.081 3.919 16 C -0.047 4.047 17 C -0.102 4.102 18 C -0.132 4.132 19 C -0.110 4.110 20 C -0.141 4.141 21 C -0.068 4.068 22 S -0.054 6.054 23 C -0.167 4.167 24 H 0.081 0.919 25 H 0.027 0.973 26 H 0.029 0.971 27 H 0.034 0.966 28 H 0.040 0.960 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.020 0.980 33 H 0.255 0.745 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 16.780 -2.642 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.259 6.259 3 C -0.056 4.056 4 C -0.066 4.066 5 N -0.238 5.238 6 C 0.057 3.943 7 C -0.520 4.520 8 H 0.075 0.925 9 C -0.143 4.143 10 N -0.542 5.542 11 Si 0.718 3.282 12 H -0.199 1.199 13 H -0.215 1.215 14 H -0.214 1.214 15 C -0.047 4.047 16 C -0.053 4.053 17 C -0.122 4.122 18 C -0.153 4.153 19 C -0.130 4.130 20 C -0.165 4.165 21 C -0.181 4.181 22 S 0.191 5.809 23 C -0.336 4.336 24 H 0.100 0.900 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.016 15.176 -2.972 15.595 hybrid contribution -0.261 0.969 0.951 1.382 sum 1.755 16.145 -2.022 16.365 Atomic orbital electron populations 1.22661 0.83748 1.02170 0.98307 1.88497 1.17327 1.25676 1.94398 1.23366 0.97756 0.86038 0.98407 1.22189 0.89968 1.00090 0.94316 1.62349 1.58233 1.04065 0.99180 1.20102 0.96613 0.80795 0.96790 1.21053 1.21763 0.91822 1.17361 0.92489 1.24846 0.95534 0.97993 0.95969 1.69970 1.34160 1.12544 1.37487 0.86594 0.79405 0.80857 0.81393 1.19948 1.21480 1.21438 1.21101 0.95550 0.89986 0.98054 1.19664 0.92797 0.95878 0.96957 1.21000 0.99787 0.92457 0.98949 1.21029 0.95557 0.97299 1.01390 1.20907 0.95326 0.98068 0.98696 1.21092 1.00040 0.92433 1.02974 1.21740 0.97414 0.96603 1.02390 1.86449 1.13056 1.12367 1.69059 1.23778 0.99999 1.05348 1.04443 0.90015 0.95452 0.95234 0.94736 0.94237 0.88926 0.91623 0.94583 0.96235 0.93551 0.90170 0.94460 0.86238 0.86397 0.86426 0.86334 0.90618 0.90196 0.87785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.34 -7.25 7.46 -35.23 -0.26 -7.51 16 3 C 0.02 0.41 5.76 37.16 0.21 0.62 16 4 C 0.06 1.24 5.40 -3.83 -0.02 1.22 16 5 N -0.52 -11.07 4.71 -237.52 -1.12 -12.19 16 6 C 0.18 4.73 4.25 -4.97 -0.02 4.70 16 7 C -0.48 -13.70 8.41 -34.44 -0.29 -13.98 16 8 H 0.06 1.63 6.94 -52.49 -0.36 1.27 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 11 Si 0.89 22.44 29.54 -169.99 -5.02 17.42 16 12 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 C 0.08 1.51 4.15 -4.98 -0.02 1.49 16 16 C -0.05 -0.75 4.56 -104.41 -0.48 -1.23 16 17 C -0.10 -1.40 8.90 -39.61 -0.35 -1.75 16 18 C -0.13 -1.57 10.04 -39.53 -0.40 -1.97 16 19 C -0.11 -1.29 10.04 -39.61 -0.40 -1.69 16 20 C -0.14 -1.85 9.36 -39.37 -0.37 -2.22 16 21 C -0.07 -1.06 6.11 -39.04 -0.24 -1.30 16 22 S -0.05 -0.87 21.02 -107.50 -2.26 -3.13 16 23 C -0.17 -1.86 9.15 101.05 0.92 -0.94 16 24 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.66 5.12 -51.93 -0.27 0.39 16 29 H 0.09 2.05 6.51 -51.93 -0.34 1.71 16 30 H 0.07 1.16 6.85 -51.93 -0.36 0.81 16 31 H 0.04 1.01 5.07 -51.93 -0.26 0.74 16 32 H 0.02 0.56 7.99 -51.93 -0.41 0.15 16 33 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.08 1.57 7.16 -51.93 -0.37 1.20 16 35 H 0.04 0.68 5.62 -51.93 -0.29 0.38 16 36 H 0.12 1.49 7.34 -52.48 -0.39 1.11 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.12 1.32 5.88 -52.48 -0.31 1.01 16 40 H 0.07 0.72 7.74 -51.92 -0.40 0.32 16 41 H 0.08 0.84 7.76 -51.93 -0.40 0.43 16 42 H 0.10 1.03 8.14 -51.92 -0.42 0.61 16 LS Contribution 345.03 15.07 5.20 5.20 Total: -1.00 -31.80 345.03 -9.41 -41.21 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.26 Total: -0.53 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -0.43 Total: -13.91 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: -0.38 Total: -38.76 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.26 Total: -7.51 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -2.26 Total: -3.13 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.80 -9.41 -41.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611574191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.170 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds