Wall clock time and date at job start Fri Apr 10 2020 20:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99343 * 2 1 4 4 C 1.53001 * 109.46653 * 184.86905 * 3 2 1 5 5 N 1.46893 * 109.47603 * 68.18228 * 4 3 2 6 6 C 1.46908 * 110.99904 * 293.83153 * 5 4 3 7 7 C 1.50698 * 109.46998 * 296.78312 * 6 5 4 8 8 H 1.07999 * 120.00040 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99905 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00110 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00292 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46762 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47066 * 119.99891 * 11 9 7 14 14 H 1.48495 * 109.47103 * 239.99869 * 11 9 7 15 15 C 1.46897 * 111.00157 * 57.78471 * 5 4 3 16 16 C 1.50699 * 109.46855 * 66.20712 * 15 5 4 17 17 C 1.38107 * 120.03722 * 258.63458 * 16 15 5 18 18 C 1.38283 * 120.08201 * 179.97438 * 17 16 15 19 19 C 1.38326 * 120.15697 * 0.04865 * 18 17 16 20 20 C 1.38064 * 120.08294 * 359.97304 * 19 18 17 21 21 C 1.38953 * 120.04584 * 78.36172 * 16 15 5 22 22 S 1.76202 * 120.07420 * 0.02562 * 21 16 15 23 23 C 1.81404 * 102.99684 * 179.97438 * 22 21 16 24 24 H 1.09007 * 109.46463 * 184.96925 * 1 2 3 25 25 H 1.08997 * 109.47244 * 304.96459 * 1 2 3 26 26 H 1.08997 * 109.47338 * 64.97508 * 1 2 3 27 27 H 1.08992 * 109.47403 * 64.86763 * 3 2 1 28 28 H 1.09003 * 109.47017 * 304.85930 * 3 2 1 29 29 H 1.09004 * 109.46739 * 308.17708 * 4 3 2 30 30 H 1.09002 * 109.47138 * 188.18557 * 4 3 2 31 31 H 1.09000 * 109.46789 * 56.78188 * 6 5 4 32 32 H 1.08993 * 109.47104 * 176.78220 * 6 5 4 33 33 H 0.96998 * 120.00064 * 180.02562 * 10 9 7 34 34 H 1.08998 * 109.46940 * 186.20512 * 15 5 4 35 35 H 1.08995 * 109.47150 * 306.20407 * 15 5 4 36 36 H 1.08003 * 119.96090 * 0.02562 * 17 16 15 37 37 H 1.07993 * 119.92352 * 180.02562 * 18 17 16 38 38 H 1.08001 * 119.95674 * 179.97438 * 19 18 17 39 39 H 1.08003 * 120.03945 * 180.02562 * 20 19 18 40 40 H 1.09003 * 109.46994 * 299.99765 * 23 22 21 41 41 H 1.08997 * 109.47121 * 59.99623 * 23 22 21 42 42 H 1.09003 * 109.46984 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5306 1.1869 -0.1224 5 7 3.8764 0.6805 -1.4572 6 6 3.4053 -0.6996 -1.6350 7 6 4.1071 -1.6005 -0.6517 8 1 4.8309 -1.1891 0.0362 9 6 3.8258 -2.9501 -0.6309 10 7 2.9446 -3.4512 -1.4690 11 14 4.6961 -4.0671 0.5875 12 1 5.6337 -3.2639 1.4128 13 1 3.6922 -4.7165 1.4682 14 1 5.4547 -5.1087 -0.1505 15 6 3.3434 1.5581 -2.5077 16 6 4.0361 2.8950 -2.4447 17 6 3.4051 3.9734 -1.8563 18 6 4.0401 5.2005 -1.7975 19 6 5.3084 5.3527 -2.3282 20 6 5.9451 4.2792 -2.9183 21 6 5.3126 3.0428 -2.9733 22 16 6.1240 1.6679 -3.7191 23 6 7.7166 2.3657 -4.2363 24 1 -0.3632 -1.0239 0.0890 25 1 -0.3633 0.5889 0.8421 26 1 -0.3634 0.4347 -0.9312 27 1 1.7592 1.8150 0.9303 28 1 1.6212 1.8764 -0.8433 29 1 3.9034 0.4979 0.6355 30 1 3.9844 2.1672 0.0230 31 1 2.3299 -0.7414 -1.4626 32 1 3.6237 -1.0301 -2.6504 33 1 2.7465 -4.4006 -1.4541 34 1 3.5176 1.1043 -3.4833 35 1 2.2727 1.6961 -2.3572 36 1 2.4149 3.8582 -1.4409 37 1 3.5445 6.0420 -1.3365 38 1 5.8011 6.3126 -2.2808 39 1 6.9356 4.3987 -3.3321 40 1 7.5450 3.1819 -4.9380 41 1 8.2487 2.7431 -3.3631 42 1 8.3133 1.5911 -4.7183 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611574191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:17:26 Heat of formation + Delta-G solvation = -21.026542 kcal Electronic energy + Delta-G solvation = -22370.666259 eV Core-core repulsion = 19248.895338 eV Total energy + Delta-G solvation = -3121.770920 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.55602 -39.20991 -37.21149 -34.64935 -32.64530 -32.14041 -30.59317 -29.57122 -28.69950 -27.19836 -26.00285 -24.34772 -23.62763 -22.64944 -20.95847 -18.48109 -18.25602 -17.53084 -17.42800 -16.87454 -16.52916 -16.19888 -15.87843 -15.66028 -15.34557 -15.00496 -14.75839 -14.54366 -14.32875 -13.86614 -13.60660 -13.42424 -13.28419 -13.06810 -12.89254 -12.75210 -12.64062 -12.51999 -12.43589 -12.23619 -11.95111 -11.77454 -11.65981 -11.10833 -10.76487 -10.55667 -10.53117 -10.26088 -9.71455 -8.67865 -8.19511 -8.01758 -6.05536 0.37902 0.46262 0.78104 1.42096 1.42493 1.55106 1.73182 2.49455 2.79422 3.06654 3.31741 3.57395 3.87877 3.93163 4.17599 4.21203 4.31418 4.32463 4.33352 4.40344 4.45785 4.54494 4.57980 4.60673 4.65249 4.72496 4.79273 4.86004 4.87378 4.94305 5.14175 5.18272 5.42367 5.46920 5.59919 5.65127 5.75224 5.81865 6.07622 6.26062 6.48035 6.51813 6.81828 7.08478 7.58657 9.09212 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.014603 B = 0.005701 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.947598 B = 4910.055471 C = 6248.336103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.388 6.388 3 C 0.027 3.973 4 C 0.068 3.932 5 N -0.522 5.522 6 C 0.202 3.798 7 C -0.489 4.489 8 H 0.049 0.951 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.954 3.046 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.283 1.283 15 C 0.093 3.907 16 C -0.072 4.072 17 C -0.105 4.105 18 C -0.125 4.125 19 C -0.102 4.102 20 C -0.144 4.144 21 C -0.076 4.076 22 S -0.150 6.150 23 C -0.142 4.142 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.022 0.978 32 H -0.022 1.022 33 H 0.257 0.743 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.131 0.869 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.139 0.861 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.424 19.899 -1.457 20.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.307 6.307 3 C -0.051 4.051 4 C -0.061 4.061 5 N -0.245 5.245 6 C 0.076 3.924 7 C -0.527 4.527 8 H 0.068 0.932 9 C -0.193 4.193 10 N -0.577 5.577 11 Si 0.781 3.219 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.209 1.209 15 C -0.035 4.035 16 C -0.078 4.078 17 C -0.126 4.126 18 C -0.145 4.145 19 C -0.122 4.122 20 C -0.168 4.168 21 C -0.190 4.190 22 S 0.094 5.906 23 C -0.311 4.311 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.040 0.960 32 H -0.004 1.004 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.149 0.851 37 H 0.170 0.830 38 H 0.172 0.828 39 H 0.157 0.843 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.735 18.328 -1.779 18.616 hybrid contribution -0.463 0.142 0.545 0.729 sum 2.272 18.470 -1.234 18.650 Atomic orbital electron populations 1.22762 0.81760 1.02328 1.00123 1.88397 1.19720 1.27779 1.94762 1.23355 0.96121 0.85225 1.00363 1.22114 0.91711 1.00056 0.92184 1.62152 1.58799 1.02485 1.01040 1.19644 0.95526 0.83507 0.93684 1.21294 1.21475 0.92578 1.17398 0.93231 1.25658 0.96301 0.99548 0.97779 1.70101 1.35580 1.12895 1.39096 0.85560 0.78402 0.78801 0.79151 1.19237 1.20832 1.20907 1.20925 0.95818 0.90939 0.95838 1.19491 0.93610 0.95052 0.99621 1.21170 1.00326 0.92529 0.98539 1.21430 0.95556 0.97286 1.00276 1.21373 0.95145 0.98935 0.96760 1.21406 1.00917 0.91673 1.02776 1.21729 0.97382 0.96776 1.03083 1.86718 1.17465 1.16009 1.70420 1.23757 0.96246 1.05916 1.05145 0.91046 0.92397 0.94250 0.91858 0.92884 0.91974 0.89350 0.96023 1.00445 0.93463 0.92635 0.94305 0.85128 0.83021 0.82843 0.84349 0.88620 0.89176 0.86770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 11.01 113.37 1.25 2.14 16 2 O -0.39 -16.66 7.46 -148.98 -1.11 -17.78 16 3 C 0.03 0.95 5.76 71.98 0.41 1.37 16 4 C 0.07 2.68 5.40 86.30 0.47 3.15 16 5 N -0.52 -23.38 4.71 -905.39 -4.26 -27.64 16 6 C 0.20 11.17 4.25 85.55 0.36 11.53 16 7 C -0.49 -28.97 8.41 25.60 0.22 -28.76 16 8 H 0.05 2.95 6.94 -2.91 -0.02 2.93 16 9 C 0.00 0.22 5.46 84.65 0.46 0.68 16 10 N -0.93 -58.70 13.29 21.45 0.28 -58.42 16 11 Si 0.95 47.09 29.54 68.60 2.03 49.12 16 12 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 13 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 14 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 15 C 0.09 3.59 4.15 85.56 0.36 3.94 16 16 C -0.07 -2.28 4.56 -19.72 -0.09 -2.37 16 17 C -0.11 -2.64 8.90 22.25 0.20 -2.45 16 18 C -0.12 -2.45 10.04 22.30 0.22 -2.22 16 19 C -0.10 -1.95 10.04 22.25 0.22 -1.73 16 20 C -0.14 -3.37 9.36 22.41 0.21 -3.16 16 21 C -0.08 -2.34 6.11 22.62 0.14 -2.20 16 22 S -0.15 -5.00 21.02 -56.49 -1.19 -6.19 16 23 C -0.14 -2.99 9.15 113.37 1.04 -1.95 16 24 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.05 1.70 5.12 -2.39 -0.01 1.69 16 29 H 0.06 2.82 6.51 -2.38 -0.02 2.80 16 30 H 0.09 3.05 6.85 -2.39 -0.02 3.03 16 31 H 0.02 1.30 5.07 -2.39 -0.01 1.28 16 32 H -0.02 -1.41 7.99 -2.39 -0.02 -1.43 16 33 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 34 H 0.06 2.38 7.16 -2.39 -0.02 2.36 16 35 H 0.04 1.45 5.62 -2.39 -0.01 1.43 16 36 H 0.13 2.90 7.34 -2.91 -0.02 2.88 16 37 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 39 H 0.14 2.60 5.88 -2.91 -0.02 2.58 16 40 H 0.09 1.61 7.74 -2.39 -0.02 1.59 16 41 H 0.09 1.70 7.76 -2.39 -0.02 1.68 16 42 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -72.86 345.03 2.22 -70.64 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 1.00 Total: 12.29 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 5.47 Total: -22.03 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -3.98 Total: -86.06 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -1.11 Total: -17.78 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Atomic # 16 Polarization: -5.00 SS G_CDS: -1.19 Total: -6.19 kcal Total: -72.86 2.22 -70.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611574191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.616 kcal (2) G-P(sol) polarization free energy of solvation -72.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds