Wall clock time and date at job start Fri Apr 10 2020 20:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47374 * 2 1 4 4 C 1.53002 * 109.46656 * 240.00226 * 2 1 3 5 5 C 1.53001 * 109.47358 * 120.00688 * 2 1 3 6 6 N 1.46901 * 109.47256 * 89.76753 * 5 2 1 7 7 C 1.46893 * 111.00035 * 75.24575 * 6 5 2 8 8 C 1.50703 * 109.47257 * 83.41738 * 7 6 5 9 9 H 1.07998 * 119.99689 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99925 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00024 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99841 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46818 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47418 * 119.99850 * 12 10 8 15 15 H 1.48505 * 109.46821 * 240.00195 * 12 10 8 16 16 C 1.46901 * 110.99745 * 311.28880 * 6 5 2 17 17 C 1.50700 * 109.47240 * 278.12003 * 16 6 5 18 18 C 1.38267 * 119.99215 * 258.06819 * 17 16 6 19 19 C 1.38216 * 120.02440 * 180.27912 * 18 17 16 20 20 C 1.38244 * 120.01189 * 359.44447 * 19 18 17 21 21 C 1.38329 * 119.98559 * 0.28341 * 20 19 18 22 22 Cl 1.73598 * 120.01118 * 179.97438 * 21 20 19 23 23 C 1.38194 * 119.99154 * 77.79632 * 17 16 6 24 24 H 1.09006 * 109.46713 * 293.10872 * 1 2 3 25 25 H 1.08994 * 109.47516 * 53.10813 * 1 2 3 26 26 H 1.08997 * 109.47206 * 173.11697 * 1 2 3 27 27 H 1.08993 * 109.47026 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.47198 * 300.00761 * 3 2 1 29 29 H 1.09001 * 109.46590 * 60.00253 * 3 2 1 30 30 H 1.09000 * 109.47490 * 277.25357 * 4 2 1 31 31 H 1.09001 * 109.46978 * 37.25967 * 4 2 1 32 32 H 1.08998 * 109.46960 * 157.25707 * 4 2 1 33 33 H 1.08996 * 109.46757 * 329.76325 * 5 2 1 34 34 H 1.09002 * 109.46980 * 209.76803 * 5 2 1 35 35 H 1.09002 * 109.46940 * 203.41561 * 7 6 5 36 36 H 1.08996 * 109.47509 * 323.41666 * 7 6 5 37 37 H 0.97000 * 119.99648 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.46879 * 158.11733 * 16 6 5 39 39 H 1.09002 * 109.46877 * 38.12582 * 16 6 5 40 40 H 1.08004 * 119.98740 * 0.02562 * 18 17 16 41 41 H 1.07993 * 119.99621 * 179.73021 * 19 18 17 42 42 H 1.07995 * 120.00640 * 180.25132 * 20 19 18 43 43 H 1.07996 * 120.00469 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7214 1.2491 6 7 2.1980 -2.1526 0.9579 7 6 3.3947 -2.3946 0.1411 8 6 4.6058 -2.4715 1.0347 9 1 4.4973 -2.3520 2.1026 10 6 5.8522 -2.6944 0.4890 11 7 5.9841 -2.8404 -0.8113 12 14 7.3532 -2.7904 1.5967 13 1 6.9391 -2.5954 3.0095 14 1 7.9943 -4.1215 1.4475 15 1 8.3196 -1.7298 1.2138 16 6 0.9975 -2.6927 0.3061 17 6 -0.0406 -3.0123 1.3507 18 6 -0.2373 -4.3208 1.7520 19 6 -1.1933 -4.6153 2.7059 20 6 -1.9453 -3.6004 3.2676 21 6 -1.7450 -2.2905 2.8705 22 17 -2.6895 -1.0156 3.5749 23 6 -0.7918 -1.9969 1.9114 24 1 -0.3633 0.4034 0.9453 25 1 -0.3634 0.6169 -0.8218 26 1 -0.3633 -1.0202 -0.1232 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 2.0387 -1.7970 -1.0738 31 1 1.3898 -0.4899 -2.0931 32 1 3.0545 -0.3905 -1.4711 33 1 1.3241 -0.5926 2.0608 34 1 3.0022 -0.3021 1.5434 35 1 3.2817 -3.3345 -0.3993 36 1 3.5198 -1.5789 -0.5709 37 1 6.8610 -2.9968 -1.1953 38 1 1.2570 -3.6008 -0.2381 39 1 0.5982 -1.9542 -0.3891 40 1 0.3533 -5.1134 1.3170 41 1 -1.3495 -5.6379 3.0158 42 1 -2.6894 -3.8302 4.0158 43 1 -0.6352 -0.9745 1.6007 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000513740887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:17:54 Heat of formation + Delta-G solvation = 75.254591 kcal Electronic energy + Delta-G solvation = -22697.636823 eV Core-core repulsion = 19577.997259 eV Total energy + Delta-G solvation = -3119.639564 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.140 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.35715 -38.47851 -36.35950 -34.06376 -32.68988 -31.40273 -30.56057 -27.84248 -27.57120 -26.75006 -25.93039 -23.74024 -22.40924 -21.37529 -20.24781 -18.58661 -16.84707 -16.39113 -15.75032 -15.41494 -15.14361 -14.62229 -14.34340 -14.12047 -13.69600 -13.60829 -13.31735 -12.99374 -12.88581 -12.29641 -12.07950 -11.63394 -11.42239 -11.35009 -11.30337 -11.17425 -11.10905 -11.00910 -10.81099 -10.74467 -10.64969 -10.41415 -10.38504 -9.95542 -9.74365 -9.71501 -9.11357 -8.70792 -8.48627 -8.34018 -7.06782 -5.98414 -3.98143 1.35619 1.45924 2.22185 3.32014 3.40000 3.45471 3.80276 4.46003 4.89524 4.96850 5.05209 5.15989 5.17868 5.25992 5.34134 5.37273 5.44814 5.59198 5.65075 5.77441 5.79918 5.91572 5.93952 5.99081 6.06716 6.13531 6.18611 6.25051 6.34687 6.36271 6.43597 6.49723 6.57344 6.67060 6.78833 6.83636 6.86471 7.00290 7.21454 7.43730 7.86968 8.12892 8.22067 8.57886 9.09366 9.64829 11.10788 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.004862 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.400643 B = 5757.546186 C = 6574.788901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.102 4.102 3 C -0.135 4.135 4 C -0.169 4.169 5 C 0.068 3.932 6 N -0.523 5.523 7 C 0.160 3.840 8 C -0.498 4.498 9 H 0.061 0.939 10 C 0.054 3.946 11 N -0.902 5.902 12 Si 0.893 3.107 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.286 1.286 16 C 0.051 3.949 17 C -0.041 4.041 18 C -0.103 4.103 19 C -0.111 4.111 20 C -0.125 4.125 21 C -0.036 4.036 22 Cl -0.086 7.086 23 C -0.131 4.131 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.023 0.977 36 H 0.039 0.961 37 H 0.259 0.741 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.592 2.441 2.867 16.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.104 4.104 3 C -0.193 4.193 4 C -0.225 4.225 5 C -0.061 4.061 6 N -0.245 5.245 7 C 0.036 3.964 8 C -0.536 4.536 9 H 0.079 0.921 10 C -0.146 4.146 11 N -0.542 5.542 12 Si 0.721 3.279 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.076 4.076 17 C -0.042 4.042 18 C -0.121 4.121 19 C -0.129 4.129 20 C -0.144 4.144 21 C -0.062 4.062 22 Cl -0.057 7.057 23 C -0.149 4.149 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.110 0.890 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.041 0.959 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.445 2.257 3.243 15.943 hybrid contribution 0.764 0.389 -0.019 0.857 sum -14.682 2.645 3.224 15.262 Atomic orbital electron populations 1.22793 0.95901 1.02416 1.00931 1.21199 0.94729 0.96360 0.98065 1.21851 1.01427 0.95315 1.00675 1.22946 1.00748 1.03174 0.95661 1.22320 1.01239 0.88066 0.94491 1.62226 1.01861 1.13143 1.47292 1.20636 0.85494 0.97363 0.92887 1.21278 0.90864 1.47352 0.94153 0.92107 1.24939 0.98872 0.95870 0.94959 1.69951 1.23532 1.50492 1.10228 0.86522 0.82909 0.77461 0.81015 1.19754 1.21179 1.21240 1.21962 0.90980 1.01162 0.93528 1.20050 0.94836 0.92415 0.96944 1.21231 0.97176 0.96716 0.97011 1.21043 0.96072 0.98748 0.97032 1.20930 1.01244 0.91007 1.01209 1.20906 0.97217 0.89059 0.99017 1.98343 1.72017 1.51773 1.83584 1.21874 0.94865 1.02108 0.96081 0.92379 0.93067 0.90410 0.92197 0.93438 0.93170 0.89046 0.94442 0.91380 0.92363 0.90126 0.95906 0.94345 0.93154 0.90672 0.90135 0.85501 0.85584 0.85720 0.82943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 6.39 37.16 0.24 -1.91 16 2 C -0.10 -1.57 0.77 -154.51 -0.12 -1.69 16 3 C -0.13 -1.92 8.19 37.16 0.30 -1.62 16 4 C -0.17 -2.88 6.20 37.16 0.23 -2.65 16 5 C 0.07 1.22 4.85 -3.82 -0.02 1.20 16 6 N -0.52 -10.47 4.46 -237.52 -1.06 -11.53 16 7 C 0.16 3.85 3.40 -4.98 -0.02 3.83 16 8 C -0.50 -13.58 8.95 -34.44 -0.31 -13.89 16 9 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 10 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 11 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 12 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 C 0.05 0.85 3.71 -4.98 -0.02 0.83 16 17 C -0.04 -0.63 5.30 -104.63 -0.55 -1.19 16 18 C -0.10 -1.46 9.67 -39.58 -0.38 -1.84 16 19 C -0.11 -1.37 10.05 -39.59 -0.40 -1.76 16 20 C -0.12 -1.55 9.83 -39.55 -0.39 -1.94 16 21 C -0.04 -0.48 6.32 -39.50 -0.25 -0.73 16 22 Cl -0.09 -1.06 28.96 -51.86 -1.50 -2.56 16 23 C -0.13 -1.89 7.46 -39.55 -0.30 -2.18 16 24 H 0.06 0.72 6.41 -51.93 -0.33 0.39 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.04 3.59 -51.93 -0.19 0.85 16 27 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.69 2.69 -51.93 -0.14 1.55 16 31 H 0.04 0.56 7.94 -51.93 -0.41 0.15 16 32 H 0.07 1.31 6.75 -51.93 -0.35 0.96 16 33 H 0.06 0.99 6.11 -51.93 -0.32 0.67 16 34 H 0.08 1.63 7.37 -51.93 -0.38 1.24 16 35 H 0.02 0.60 7.37 -51.93 -0.38 0.21 16 36 H 0.04 0.95 3.85 -51.93 -0.20 0.75 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 38 H 0.07 1.29 7.23 -51.93 -0.38 0.92 16 39 H 0.08 1.25 2.35 -51.93 -0.12 1.13 16 40 H 0.13 1.71 8.02 -52.48 -0.42 1.29 16 41 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.15 2.11 2.67 -52.49 -0.14 1.97 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -28.31 331.20 -9.77 -38.08 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.84 Total: 3.89 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -2.07 Total: -24.14 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.32 Total: -36.77 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.31 -9.77 -38.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513740887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.339 kcal (2) G-P(sol) polarization free energy of solvation -28.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds