Wall clock time and date at job start Fri Apr 10 2020 20:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47374 * 2 1 4 4 C 1.53002 * 109.46656 * 240.00226 * 2 1 3 5 5 C 1.53001 * 109.47358 * 120.00688 * 2 1 3 6 6 N 1.46901 * 109.47256 * 89.76753 * 5 2 1 7 7 C 1.46893 * 111.00035 * 75.24575 * 6 5 2 8 8 C 1.50703 * 109.47257 * 83.41738 * 7 6 5 9 9 H 1.07998 * 119.99689 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99925 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00024 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99841 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46818 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47418 * 119.99850 * 12 10 8 15 15 H 1.48505 * 109.46821 * 240.00195 * 12 10 8 16 16 C 1.46901 * 110.99745 * 311.28880 * 6 5 2 17 17 C 1.50700 * 109.47240 * 278.12003 * 16 6 5 18 18 C 1.38267 * 119.99215 * 258.06819 * 17 16 6 19 19 C 1.38216 * 120.02440 * 180.27912 * 18 17 16 20 20 C 1.38244 * 120.01189 * 359.44447 * 19 18 17 21 21 C 1.38329 * 119.98559 * 0.28341 * 20 19 18 22 22 Cl 1.73598 * 120.01118 * 179.97438 * 21 20 19 23 23 C 1.38194 * 119.99154 * 77.79632 * 17 16 6 24 24 H 1.09006 * 109.46713 * 293.10872 * 1 2 3 25 25 H 1.08994 * 109.47516 * 53.10813 * 1 2 3 26 26 H 1.08997 * 109.47206 * 173.11697 * 1 2 3 27 27 H 1.08993 * 109.47026 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.47198 * 300.00761 * 3 2 1 29 29 H 1.09001 * 109.46590 * 60.00253 * 3 2 1 30 30 H 1.09000 * 109.47490 * 277.25357 * 4 2 1 31 31 H 1.09001 * 109.46978 * 37.25967 * 4 2 1 32 32 H 1.08998 * 109.46960 * 157.25707 * 4 2 1 33 33 H 1.08996 * 109.46757 * 329.76325 * 5 2 1 34 34 H 1.09002 * 109.46980 * 209.76803 * 5 2 1 35 35 H 1.09002 * 109.46940 * 203.41561 * 7 6 5 36 36 H 1.08996 * 109.47509 * 323.41666 * 7 6 5 37 37 H 0.97000 * 119.99648 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.46879 * 158.11733 * 16 6 5 39 39 H 1.09002 * 109.46877 * 38.12582 * 16 6 5 40 40 H 1.08004 * 119.98740 * 0.02562 * 18 17 16 41 41 H 1.07993 * 119.99621 * 179.73021 * 19 18 17 42 42 H 1.07995 * 120.00640 * 180.25132 * 20 19 18 43 43 H 1.07996 * 120.00469 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7214 1.2491 6 7 2.1980 -2.1526 0.9579 7 6 3.3947 -2.3946 0.1411 8 6 4.6058 -2.4715 1.0347 9 1 4.4973 -2.3520 2.1026 10 6 5.8522 -2.6944 0.4890 11 7 5.9841 -2.8404 -0.8113 12 14 7.3532 -2.7904 1.5967 13 1 6.9391 -2.5954 3.0095 14 1 7.9943 -4.1215 1.4475 15 1 8.3196 -1.7298 1.2138 16 6 0.9975 -2.6927 0.3061 17 6 -0.0406 -3.0123 1.3507 18 6 -0.2373 -4.3208 1.7520 19 6 -1.1933 -4.6153 2.7059 20 6 -1.9453 -3.6004 3.2676 21 6 -1.7450 -2.2905 2.8705 22 17 -2.6895 -1.0156 3.5749 23 6 -0.7918 -1.9969 1.9114 24 1 -0.3633 0.4034 0.9453 25 1 -0.3634 0.6169 -0.8218 26 1 -0.3633 -1.0202 -0.1232 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 2.0387 -1.7970 -1.0738 31 1 1.3898 -0.4899 -2.0931 32 1 3.0545 -0.3905 -1.4711 33 1 1.3241 -0.5926 2.0608 34 1 3.0022 -0.3021 1.5434 35 1 3.2817 -3.3345 -0.3993 36 1 3.5198 -1.5789 -0.5709 37 1 6.8610 -2.9968 -1.1953 38 1 1.2570 -3.6008 -0.2381 39 1 0.5982 -1.9542 -0.3891 40 1 0.3533 -5.1134 1.3170 41 1 -1.3495 -5.6379 3.0158 42 1 -2.6894 -3.8302 4.0158 43 1 -0.6352 -0.9745 1.6007 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000513740887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:17:53 Heat of formation + Delta-G solvation = 60.672853 kcal Electronic energy + Delta-G solvation = -22698.269134 eV Core-core repulsion = 19577.997259 eV Total energy + Delta-G solvation = -3120.271875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.140 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.68610 -39.62324 -37.35545 -35.62536 -34.46812 -32.77195 -31.63031 -29.42328 -28.92179 -28.21567 -27.22171 -25.41169 -23.46121 -22.84267 -21.65613 -19.87664 -18.56790 -17.73791 -16.99659 -16.82955 -16.59280 -16.19466 -15.67010 -15.47378 -15.18769 -14.79986 -14.48411 -14.21721 -14.14902 -13.93190 -13.30075 -13.01053 -12.94762 -12.80278 -12.65885 -12.48933 -12.37509 -12.34414 -12.29205 -12.13978 -12.10949 -11.90423 -11.67977 -11.51628 -11.42432 -11.11539 -10.93873 -10.46712 -9.76351 -9.54490 -8.68326 -8.09836 -6.18916 0.29382 0.40947 1.21155 1.39214 1.41060 1.53357 2.42979 2.72394 3.18870 3.54446 3.86297 3.89884 3.92819 3.97893 4.06955 4.17837 4.31680 4.46038 4.50293 4.56951 4.62202 4.69131 4.71882 4.79061 4.85670 4.93408 4.96538 5.08117 5.10256 5.16316 5.22549 5.28522 5.31956 5.35959 5.45035 5.47696 5.51217 5.58539 5.72886 5.76557 5.95092 6.20778 6.52088 6.72766 6.96338 7.48402 8.96352 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.004862 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.400643 B = 5757.546186 C = 6574.788901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.097 4.097 3 C -0.132 4.132 4 C -0.165 4.165 5 C 0.071 3.929 6 N -0.535 5.535 7 C 0.176 3.824 8 C -0.513 4.513 9 H 0.048 0.952 10 C 0.006 3.994 11 N -0.932 5.932 12 Si 0.955 3.045 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.280 1.280 16 C 0.056 3.944 17 C -0.060 4.060 18 C -0.118 4.118 19 C -0.105 4.105 20 C -0.121 4.121 21 C -0.044 4.044 22 Cl -0.074 7.074 23 C -0.137 4.137 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.050 0.950 35 H -0.006 1.006 36 H 0.033 0.967 37 H 0.261 0.739 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.125 0.875 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.421 2.918 4.060 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.098 4.098 3 C -0.189 4.189 4 C -0.222 4.222 5 C -0.058 4.058 6 N -0.257 5.257 7 C 0.051 3.949 8 C -0.552 4.552 9 H 0.067 0.933 10 C -0.192 4.192 11 N -0.573 5.573 12 Si 0.781 3.219 13 H -0.195 1.195 14 H -0.206 1.206 15 H -0.205 1.205 16 C -0.070 4.070 17 C -0.061 4.061 18 C -0.137 4.137 19 C -0.123 4.123 20 C -0.140 4.140 21 C -0.071 4.071 22 Cl -0.045 7.045 23 C -0.155 4.155 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.012 0.988 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.143 0.857 41 H 0.173 0.827 42 H 0.168 0.832 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -17.293 2.740 4.444 18.064 hybrid contribution 1.255 0.225 -0.363 1.325 sum -16.039 2.965 4.081 16.814 Atomic orbital electron populations 1.22700 0.93398 1.02803 1.02457 1.21123 0.96616 0.96467 0.95619 1.21814 1.00050 0.94701 1.02376 1.22826 0.99625 1.02171 0.97548 1.22272 1.00144 0.87104 0.96244 1.62094 1.01915 1.14761 1.46953 1.20304 0.86593 0.95609 0.92375 1.21587 0.92506 1.47134 0.93937 0.93323 1.25697 1.01658 0.95568 0.96245 1.70057 1.24247 1.51323 1.11701 0.85542 0.79465 0.77623 0.79223 1.19480 1.20643 1.20542 1.21906 0.90082 1.00690 0.94324 1.19910 0.95225 0.93414 0.97514 1.21386 0.98066 0.96352 0.97849 1.21345 0.94854 1.00310 0.95816 1.21276 1.01196 0.90463 1.01065 1.21040 0.97171 0.89968 0.98881 1.98346 1.71569 1.51341 1.83290 1.21884 0.95162 1.01973 0.96465 0.91138 0.91109 0.90681 0.94415 0.91655 0.91502 0.90828 0.92076 0.94378 0.91021 0.93088 0.98770 0.94965 0.92997 0.92117 0.88739 0.85673 0.82713 0.83242 0.82599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 6.39 71.98 0.46 -3.30 16 2 C -0.10 -2.91 0.77 -52.18 -0.04 -2.95 16 3 C -0.13 -3.62 8.19 71.98 0.59 -3.03 16 4 C -0.17 -5.72 6.20 71.98 0.45 -5.27 16 5 C 0.07 2.59 4.85 86.30 0.42 3.00 16 6 N -0.53 -22.11 4.46 -905.37 -4.04 -26.15 16 7 C 0.18 8.92 3.40 85.56 0.29 9.21 16 8 C -0.51 -29.03 8.95 25.60 0.23 -28.80 16 9 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 10 C 0.01 0.33 5.46 84.66 0.46 0.79 16 11 N -0.93 -55.21 13.29 21.45 0.28 -54.92 16 12 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 16 C 0.06 1.93 3.71 85.56 0.32 2.25 16 17 C -0.06 -1.80 5.30 -19.87 -0.11 -1.90 16 18 C -0.12 -3.26 9.67 22.27 0.22 -3.04 16 19 C -0.11 -2.35 10.05 22.27 0.22 -2.13 16 20 C -0.12 -2.66 9.83 22.29 0.22 -2.44 16 21 C -0.04 -1.09 6.32 22.32 0.14 -0.95 16 22 Cl -0.07 -1.63 28.96 -2.72 -0.08 -1.71 16 23 C -0.14 -3.72 7.46 22.29 0.17 -3.55 16 24 H 0.07 1.54 6.41 -2.38 -0.02 1.52 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.86 3.59 -2.39 -0.01 1.85 16 27 H 0.04 1.18 8.09 -2.39 -0.02 1.16 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.07 2.82 2.69 -2.39 -0.01 2.82 16 31 H 0.06 1.78 7.94 -2.39 -0.02 1.76 16 32 H 0.04 1.53 6.75 -2.39 -0.02 1.51 16 33 H 0.07 2.40 6.11 -2.39 -0.01 2.39 16 34 H 0.05 2.13 7.37 -2.39 -0.02 2.12 16 35 H -0.01 -0.32 7.37 -2.39 -0.02 -0.33 16 36 H 0.03 1.69 3.85 -2.39 -0.01 1.68 16 37 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 38 H 0.06 2.20 7.23 -2.39 -0.02 2.19 16 39 H 0.10 2.93 2.35 -2.39 -0.01 2.93 16 40 H 0.13 3.40 8.02 -2.91 -0.02 3.37 16 41 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 43 H 0.16 4.02 2.67 -2.91 -0.01 4.01 16 Total: -1.00 -62.10 331.20 3.25 -58.85 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 1.02 Total: 19.12 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 4.03 Total: -42.11 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -3.76 Total: -81.07 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.71 kcal Total: -62.10 3.25 -58.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513740887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.519 kcal (2) G-P(sol) polarization free energy of solvation -62.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds