Wall clock time and date at job start Fri Apr 10 2020 20:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00156 * 2 1 4 4 H 1.48505 * 109.46949 * 269.99960 * 3 2 1 5 5 H 1.48497 * 109.47215 * 29.99380 * 3 2 1 6 6 H 1.48495 * 109.47575 * 149.99871 * 3 2 1 7 7 C 1.37871 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00337 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00248 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47384 * 180.02562 * 9 7 2 11 11 C 1.46500 * 120.00155 * 89.99821 * 10 9 7 12 12 C 1.52996 * 109.47379 * 93.96538 * 11 10 9 13 13 C 1.53004 * 117.50060 * 184.71177 * 12 11 10 14 14 C 1.53005 * 60.00140 * 252.51308 * 13 12 11 15 15 C 1.34779 * 120.00131 * 269.99821 * 10 9 7 16 16 O 1.21281 * 119.99972 * 184.46553 * 15 10 9 17 17 C 1.50693 * 119.99631 * 4.46728 * 15 10 9 18 18 H 1.09003 * 110.01879 * 315.51445 * 17 15 10 19 19 C 1.53876 * 110.03448 * 76.91057 * 17 15 10 20 20 C 1.54270 * 106.60075 * 119.28281 * 19 17 15 21 21 C 1.54886 * 104.19424 * 23.61049 * 20 19 17 22 22 H 1.08998 * 110.75819 * 80.55385 * 21 20 19 23 23 C 1.50707 * 110.75690 * 203.74356 * 21 20 19 24 24 O 1.20824 * 119.99825 * 118.54407 * 23 21 20 25 25 O 1.34223 * 119.99799 * 298.54950 * 23 21 20 26 26 C 1.54267 * 110.03370 * 194.12723 * 17 15 10 27 27 H 0.97000 * 119.99905 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47359 * 59.99681 * 9 7 2 29 29 H 1.09002 * 109.46546 * 299.99988 * 9 7 2 30 30 H 1.09008 * 109.47318 * 333.96709 * 11 10 9 31 31 H 1.09004 * 109.47485 * 213.97032 * 11 10 9 32 32 H 1.08993 * 115.56404 * 330.40716 * 12 11 10 33 33 H 1.09001 * 117.49226 * 145.02435 * 13 12 11 34 34 H 1.09003 * 117.50004 * 0.02562 * 13 12 11 35 35 H 1.08997 * 117.49384 * 107.49291 * 14 13 12 36 36 H 1.09002 * 117.49757 * 252.48645 * 14 13 12 37 37 H 1.09001 * 110.03288 * 238.56798 * 19 17 15 38 38 H 1.08997 * 110.02907 * 359.94940 * 19 17 15 39 39 H 1.08999 * 110.48691 * 142.28922 * 20 19 17 40 40 H 1.08997 * 110.48394 * 264.80449 * 20 19 17 41 41 H 0.96694 * 116.99873 * 180.02562 * 25 23 21 42 42 H 1.09010 * 110.48285 * 335.78347 * 26 17 15 43 43 H 1.09002 * 110.48805 * 98.42458 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5752 0.0010 11 6 4.2445 -3.2656 -1.2678 12 6 5.7151 -3.1078 -1.6590 13 6 6.1492 -3.6669 -3.0155 14 6 6.5683 -4.3761 -1.7261 15 6 4.2240 -3.2109 1.1681 16 8 4.7045 -4.3244 1.1696 17 6 3.8777 -2.5378 2.4712 18 1 4.2131 -1.5008 2.4562 19 6 2.3584 -2.5972 2.7077 20 6 2.1466 -3.3836 4.0179 21 6 3.4844 -3.2180 4.7807 22 1 3.5237 -2.2533 5.2867 23 6 3.6814 -4.3429 5.7640 24 8 4.6274 -5.0859 5.6503 25 8 2.8058 -4.5195 6.7659 26 6 4.5372 -3.2895 3.6459 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6800 0.8911 29 1 3.8751 -0.6804 -0.8889 30 1 3.6135 -2.8331 -2.0444 31 1 4.0096 -4.3242 -1.1566 32 1 6.1983 -2.1939 -1.3134 33 1 6.9180 -3.1207 -3.5621 34 1 5.3870 -4.1468 -3.6293 35 1 6.0819 -5.3229 -1.4917 36 1 7.6129 -4.2969 -1.4249 37 1 1.9565 -1.5890 2.8083 38 1 1.8715 -3.1120 1.8795 39 1 1.3248 -2.9551 4.5914 40 1 1.9544 -4.4351 3.8047 41 1 2.9742 -5.2542 7.3716 42 1 4.7339 -4.3264 3.3730 43 1 5.4590 -2.7921 3.9476 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480606.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:08 Heat of formation + Delta-G solvation = -113.716690 kcal Electronic energy + Delta-G solvation = -24802.186696 eV Core-core repulsion = 21233.643558 eV Total energy + Delta-G solvation = -3568.543138 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.49031 -39.50825 -37.39542 -36.38427 -35.92221 -34.84872 -32.47249 -29.98241 -28.50192 -28.29471 -26.32525 -23.40679 -22.50355 -22.08521 -21.23757 -20.23697 -19.81129 -18.35364 -17.72615 -17.13324 -16.82798 -16.28045 -15.94371 -15.57247 -14.94518 -14.68394 -14.33768 -14.10365 -13.59281 -13.26061 -13.15367 -12.90968 -12.60967 -12.15216 -12.05306 -11.69589 -11.50821 -11.42553 -11.35290 -11.27059 -11.01657 -10.93293 -10.78627 -10.74833 -10.52704 -10.41640 -10.28498 -10.14371 -10.08159 -9.63373 -9.55051 -8.97439 -8.71932 -7.77000 -6.23963 -4.24417 2.26938 3.07022 3.14921 3.22462 3.25210 3.35691 3.76478 4.14202 4.23951 4.60403 4.80079 5.03198 5.06188 5.08776 5.19727 5.27138 5.38994 5.52657 5.64095 5.69599 5.73095 5.76111 5.82308 5.86080 5.98014 6.09138 6.12525 6.14976 6.18539 6.32509 6.34858 6.40882 6.48685 6.58052 6.62178 6.67777 6.77640 6.91624 7.34320 7.42576 7.94048 8.12778 8.39814 8.80329 8.95307 9.35737 10.88187 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.010468 B = 0.006271 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.292589 B = 4463.590347 C = 6608.104732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.867 3.133 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.534 4.534 8 H 0.080 0.920 9 C 0.206 3.794 10 N -0.588 5.588 11 C 0.152 3.848 12 C -0.160 4.160 13 C -0.182 4.182 14 C -0.170 4.170 15 C 0.524 3.476 16 O -0.562 6.562 17 C -0.106 4.106 18 H 0.095 0.905 19 C -0.094 4.094 20 C -0.110 4.110 21 C -0.089 4.089 22 H 0.114 0.886 23 C 0.487 3.513 24 O -0.515 6.515 25 O -0.517 6.517 26 C -0.097 4.097 27 H 0.266 0.734 28 H 0.034 0.966 29 H 0.028 0.972 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.405 0.595 42 H 0.099 0.901 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.996 -3.634 5.645 9.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.694 3.306 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.572 4.572 8 H 0.098 0.902 9 C 0.085 3.915 10 N -0.318 5.318 11 C 0.029 3.971 12 C -0.180 4.180 13 C -0.220 4.220 14 C -0.207 4.207 15 C 0.313 3.687 16 O -0.442 6.442 17 C -0.127 4.127 18 H 0.113 0.887 19 C -0.132 4.132 20 C -0.148 4.148 21 C -0.108 4.108 22 H 0.132 0.868 23 C 0.329 3.671 24 O -0.402 6.402 25 O -0.328 6.328 26 C -0.135 4.135 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.263 0.737 42 H 0.118 0.882 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.248 -3.942 5.317 9.816 hybrid contribution 0.446 0.712 0.318 0.898 sum 7.694 -3.230 5.635 10.069 Atomic orbital electron populations 1.69881 1.06135 1.27116 1.49595 1.24830 0.94650 0.98665 0.94423 0.86993 0.80438 0.84277 0.78890 1.20049 1.20967 1.18935 1.21347 0.88863 0.94911 1.52105 0.90156 1.19861 0.96038 0.78115 0.97492 1.47851 1.63826 1.15621 1.04481 1.20857 0.92334 0.97799 0.86156 1.22771 0.97258 0.97988 0.99970 1.22925 1.03551 1.04700 0.90820 1.22922 0.99960 0.96987 1.00840 1.20332 0.77117 0.85695 0.85592 1.90595 1.45670 1.20352 1.87535 1.21832 0.98113 1.00492 0.92300 0.88659 1.22004 0.92716 1.02185 0.96288 1.22403 0.94442 1.01421 0.96503 1.22096 0.99711 0.95486 0.93481 0.86802 1.23554 0.78779 0.85087 0.79646 1.90715 1.31091 1.45725 1.72716 1.84577 1.53721 1.54352 1.40183 1.22323 0.95954 1.03829 0.91365 0.92411 0.94782 0.95371 0.89810 0.90973 0.88159 0.89256 0.88883 0.88698 0.89591 0.89391 0.89983 0.90302 0.91491 0.73725 0.88224 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.46 13.96 55.43 0.77 -23.68 16 2 C 0.08 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 18.93 27.47 -169.99 -4.67 14.26 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 7 C -0.53 -12.95 8.10 -34.44 -0.28 -13.23 16 8 H 0.08 2.18 7.37 -52.49 -0.39 1.80 16 9 C 0.21 4.30 3.94 -5.19 -0.02 4.28 16 10 N -0.59 -11.55 2.46 -175.06 -0.43 -11.98 16 11 C 0.15 2.71 5.61 -4.04 -0.02 2.69 16 12 C -0.16 -2.51 5.99 -90.62 -0.54 -3.05 16 13 C -0.18 -2.36 10.25 -26.73 -0.27 -2.64 16 14 C -0.17 -2.44 10.18 -26.72 -0.27 -2.71 16 15 C 0.52 10.36 6.63 -10.99 -0.07 10.29 16 16 O -0.56 -12.21 15.12 5.56 0.08 -12.13 16 17 C -0.11 -1.82 2.51 -90.66 -0.23 -2.05 16 18 H 0.10 1.56 6.47 -51.93 -0.34 1.23 16 19 C -0.09 -1.62 4.91 -25.61 -0.13 -1.74 16 20 C -0.11 -1.57 6.25 -25.07 -0.16 -1.73 16 21 C -0.09 -1.19 3.40 -89.74 -0.31 -1.50 16 22 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 23 C 0.49 6.67 7.63 36.01 0.27 6.94 16 24 O -0.51 -8.63 16.55 -18.75 -0.31 -8.95 16 25 O -0.52 -5.50 13.41 -39.24 -0.53 -6.03 16 26 C -0.10 -1.52 5.29 -25.03 -0.13 -1.65 16 27 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.03 0.69 5.16 -51.93 -0.27 0.43 16 29 H 0.03 0.58 7.50 -51.93 -0.39 0.19 16 30 H 0.08 1.48 8.04 -51.92 -0.42 1.06 16 31 H 0.07 1.33 7.35 -51.93 -0.38 0.95 16 32 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.58 8.05 -51.93 -0.42 1.16 16 38 H 0.08 1.63 6.64 -51.93 -0.34 1.29 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 41 H 0.40 2.52 9.10 45.56 0.41 2.94 16 42 H 0.10 1.84 6.15 -51.92 -0.32 1.53 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 349.08 15.07 5.26 5.26 Total: -1.00 -30.17 349.08 -7.88 -38.04 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.81 Total: 9.43 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -2.25 Total: -4.24 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.34 Total: -35.66 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.75 Total: -27.10 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.67 Total: 14.26 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.17 -7.88 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480606.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.672 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds