Wall clock time and date at job start Fri Apr 10 2020 20:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00156 * 2 1 4 4 H 1.48505 * 109.46949 * 269.99960 * 3 2 1 5 5 H 1.48497 * 109.47215 * 29.99380 * 3 2 1 6 6 H 1.48495 * 109.47575 * 149.99871 * 3 2 1 7 7 C 1.37871 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00337 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00248 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47384 * 180.02562 * 9 7 2 11 11 C 1.46500 * 120.00155 * 89.99821 * 10 9 7 12 12 C 1.52996 * 109.47379 * 93.96538 * 11 10 9 13 13 C 1.53004 * 117.50060 * 184.71177 * 12 11 10 14 14 C 1.53005 * 60.00140 * 252.51308 * 13 12 11 15 15 C 1.34779 * 120.00131 * 269.99821 * 10 9 7 16 16 O 1.21281 * 119.99972 * 184.46553 * 15 10 9 17 17 C 1.50693 * 119.99631 * 4.46728 * 15 10 9 18 18 H 1.09003 * 110.01879 * 315.51445 * 17 15 10 19 19 C 1.53876 * 110.03448 * 76.91057 * 17 15 10 20 20 C 1.54270 * 106.60075 * 119.28281 * 19 17 15 21 21 C 1.54886 * 104.19424 * 23.61049 * 20 19 17 22 22 H 1.08998 * 110.75819 * 80.55385 * 21 20 19 23 23 C 1.50707 * 110.75690 * 203.74356 * 21 20 19 24 24 O 1.20824 * 119.99825 * 118.54407 * 23 21 20 25 25 O 1.34223 * 119.99799 * 298.54950 * 23 21 20 26 26 C 1.54267 * 110.03370 * 194.12723 * 17 15 10 27 27 H 0.97000 * 119.99905 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47359 * 59.99681 * 9 7 2 29 29 H 1.09002 * 109.46546 * 299.99988 * 9 7 2 30 30 H 1.09008 * 109.47318 * 333.96709 * 11 10 9 31 31 H 1.09004 * 109.47485 * 213.97032 * 11 10 9 32 32 H 1.08993 * 115.56404 * 330.40716 * 12 11 10 33 33 H 1.09001 * 117.49226 * 145.02435 * 13 12 11 34 34 H 1.09003 * 117.50004 * 0.02562 * 13 12 11 35 35 H 1.08997 * 117.49384 * 107.49291 * 14 13 12 36 36 H 1.09002 * 117.49757 * 252.48645 * 14 13 12 37 37 H 1.09001 * 110.03288 * 238.56798 * 19 17 15 38 38 H 1.08997 * 110.02907 * 359.94940 * 19 17 15 39 39 H 1.08999 * 110.48691 * 142.28922 * 20 19 17 40 40 H 1.08997 * 110.48394 * 264.80449 * 20 19 17 41 41 H 0.96694 * 116.99873 * 180.02562 * 25 23 21 42 42 H 1.09010 * 110.48285 * 335.78347 * 26 17 15 43 43 H 1.09002 * 110.48805 * 98.42458 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5752 0.0010 11 6 4.2445 -3.2656 -1.2678 12 6 5.7151 -3.1078 -1.6590 13 6 6.1492 -3.6669 -3.0155 14 6 6.5683 -4.3761 -1.7261 15 6 4.2240 -3.2109 1.1681 16 8 4.7045 -4.3244 1.1696 17 6 3.8777 -2.5378 2.4712 18 1 4.2131 -1.5008 2.4562 19 6 2.3584 -2.5972 2.7077 20 6 2.1466 -3.3836 4.0179 21 6 3.4844 -3.2180 4.7807 22 1 3.5237 -2.2533 5.2867 23 6 3.6814 -4.3429 5.7640 24 8 4.6274 -5.0859 5.6503 25 8 2.8058 -4.5195 6.7659 26 6 4.5372 -3.2895 3.6459 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6800 0.8911 29 1 3.8751 -0.6804 -0.8889 30 1 3.6135 -2.8331 -2.0444 31 1 4.0096 -4.3242 -1.1566 32 1 6.1983 -2.1939 -1.3134 33 1 6.9180 -3.1207 -3.5621 34 1 5.3870 -4.1468 -3.6293 35 1 6.0819 -5.3229 -1.4917 36 1 7.6129 -4.2969 -1.4249 37 1 1.9565 -1.5890 2.8083 38 1 1.8715 -3.1120 1.8795 39 1 1.3248 -2.9551 4.5914 40 1 1.9544 -4.4351 3.8047 41 1 2.9742 -5.2542 7.3716 42 1 4.7339 -4.3264 3.3730 43 1 5.4590 -2.7921 3.9476 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480606.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:07 Heat of formation + Delta-G solvation = -131.744677 kcal Electronic energy + Delta-G solvation = -24802.968448 eV Core-core repulsion = 21233.643558 eV Total energy + Delta-G solvation = -3569.324890 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.69794 -40.89735 -38.62629 -37.64467 -37.02152 -36.47342 -34.36785 -31.29709 -30.03236 -29.79333 -27.79308 -24.74876 -24.13686 -23.19506 -22.58486 -21.46049 -21.00668 -19.75485 -18.98221 -18.84422 -18.25506 -17.66708 -17.17179 -16.93779 -16.39776 -15.94760 -15.83173 -15.49969 -14.89879 -14.66938 -14.63169 -14.32167 -14.14250 -13.76853 -13.52555 -13.08207 -12.89853 -12.71924 -12.56681 -12.48524 -12.43898 -12.32704 -12.15928 -12.15624 -12.00694 -11.82034 -11.66630 -11.46014 -11.39276 -11.27848 -10.86022 -10.72348 -10.47665 -9.40307 -8.20271 -6.25051 1.20191 1.44381 1.47343 1.54758 1.77694 2.05952 2.34153 2.40779 2.95273 3.13355 3.38273 3.54610 3.81632 3.84486 4.00455 4.09632 4.16508 4.33893 4.36270 4.40031 4.43831 4.55221 4.59248 4.66542 4.72927 4.75870 4.79550 4.80420 4.91677 5.00536 5.02823 5.11973 5.26208 5.27790 5.30227 5.36042 5.45261 5.52308 5.62550 5.76911 6.27749 6.67433 6.79966 7.02270 7.32039 7.42849 8.95139 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.010468 B = 0.006271 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.292589 B = 4463.590347 C = 6608.104732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.026 3.974 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.236 1.236 7 C -0.522 4.522 8 H 0.036 0.964 9 C 0.214 3.786 10 N -0.592 5.592 11 C 0.150 3.850 12 C -0.178 4.178 13 C -0.156 4.156 14 C -0.173 4.173 15 C 0.517 3.483 16 O -0.586 6.586 17 C -0.104 4.104 18 H 0.110 0.890 19 C -0.088 4.088 20 C -0.102 4.102 21 C -0.081 4.081 22 H 0.147 0.853 23 C 0.495 3.505 24 O -0.551 6.551 25 O -0.507 6.507 26 C -0.092 4.092 27 H 0.266 0.734 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.426 0.574 42 H 0.068 0.932 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.729 -2.173 6.504 11.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.173 4.173 3 Si 0.753 3.247 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.159 1.159 7 C -0.561 4.561 8 H 0.055 0.945 9 C 0.092 3.908 10 N -0.321 5.321 11 C 0.027 3.973 12 C -0.197 4.197 13 C -0.194 4.194 14 C -0.210 4.210 15 C 0.306 3.694 16 O -0.468 6.468 17 C -0.125 4.125 18 H 0.128 0.872 19 C -0.126 4.126 20 C -0.140 4.140 21 C -0.100 4.100 22 H 0.165 0.835 23 C 0.339 3.661 24 O -0.441 6.441 25 O -0.320 6.320 26 C -0.130 4.130 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.062 0.938 39 H 0.118 0.882 40 H 0.075 0.925 41 H 0.288 0.712 42 H 0.087 0.913 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.988 -2.503 6.189 11.196 hybrid contribution -0.187 0.125 0.039 0.229 sum 8.800 -2.378 6.227 11.040 Atomic orbital electron populations 1.70035 1.08152 1.28007 1.51731 1.25592 0.95221 1.02327 0.94120 0.85985 0.80157 0.79395 0.79120 1.19842 1.21338 1.15928 1.21378 0.90617 0.93150 1.50926 0.94527 1.19729 0.93549 0.79013 0.98529 1.47926 1.63556 1.15392 1.05251 1.20897 0.94271 0.96676 0.85429 1.22628 0.95585 0.98651 1.02836 1.23034 1.03532 1.03018 0.89788 1.22931 1.00135 0.95785 1.02170 1.20836 0.76543 0.85521 0.86457 1.90578 1.46826 1.21410 1.87957 1.21885 0.97985 1.01149 0.91500 0.87237 1.21850 0.92515 1.01624 0.96579 1.22315 0.95950 1.00433 0.95305 1.22065 0.97715 0.97216 0.93014 0.83519 1.23438 0.78390 0.84378 0.79896 1.90716 1.32750 1.46902 1.73771 1.84516 1.52426 1.55317 1.39732 1.22216 0.97382 1.01809 0.91583 0.92520 0.93163 0.94265 0.90218 0.92460 0.88178 0.86936 0.88165 0.90021 0.88448 0.90103 0.93782 0.88222 0.92510 0.71248 0.91327 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.86 13.96 21.44 0.30 -52.56 16 2 C 0.03 1.34 5.47 84.65 0.46 1.80 16 3 Si 0.93 37.90 27.47 68.60 1.88 39.78 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.24 -8.49 6.54 99.48 0.65 -7.84 16 7 C -0.52 -25.76 8.10 25.60 0.21 -25.55 16 8 H 0.04 2.10 7.37 -2.91 -0.02 2.08 16 9 C 0.21 8.71 3.94 85.64 0.34 9.04 16 10 N -0.59 -23.44 2.46 -826.16 -2.03 -25.47 16 11 C 0.15 5.45 5.61 86.38 0.48 5.93 16 12 C -0.18 -5.39 5.99 -10.79 -0.06 -5.46 16 13 C -0.16 -3.72 10.25 30.60 0.31 -3.40 16 14 C -0.17 -4.80 10.18 30.60 0.31 -4.49 16 15 C 0.52 20.71 6.63 87.65 0.58 21.29 16 16 O -0.59 -26.19 15.12 -3.03 -0.05 -26.23 16 17 C -0.10 -3.51 2.51 -10.82 -0.03 -3.54 16 18 H 0.11 3.37 6.47 -2.39 -0.02 3.35 16 19 C -0.09 -3.04 4.91 31.32 0.15 -2.88 16 20 C -0.10 -2.84 6.25 31.67 0.20 -2.64 16 21 C -0.08 -2.02 3.40 -10.22 -0.03 -2.05 16 22 H 0.15 2.73 8.14 -2.39 -0.02 2.71 16 23 C 0.50 12.61 7.63 71.24 0.54 13.15 16 24 O -0.55 -17.96 16.55 21.97 0.36 -17.59 16 25 O -0.51 -9.39 13.41 -51.35 -0.69 -10.08 16 26 C -0.09 -2.79 5.29 31.70 0.17 -2.62 16 27 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.05 1.92 5.16 -2.39 -0.01 1.90 16 29 H 0.04 1.54 7.50 -2.39 -0.02 1.53 16 30 H 0.08 2.88 8.04 -2.38 -0.02 2.86 16 31 H 0.06 2.21 7.35 -2.38 -0.02 2.19 16 32 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.08 2.47 8.03 -2.39 -0.02 2.45 16 36 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.08 2.89 8.05 -2.39 -0.02 2.87 16 38 H 0.04 1.85 6.64 -2.39 -0.02 1.83 16 39 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.06 1.68 8.04 -2.39 -0.02 1.66 16 41 H 0.43 4.14 9.10 -74.06 -0.67 3.47 16 42 H 0.07 2.56 6.15 -2.38 -0.01 2.54 16 43 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -67.25 349.08 3.71 -63.54 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.29 Total: 30.02 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 3.63 Total: -1.41 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -1.74 Total: -78.04 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -0.37 Total: -53.90 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 1.88 Total: 39.78 kcal Total: -67.25 3.71 -63.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480606.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.200 kcal (2) G-P(sol) polarization free energy of solvation -67.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds