Wall clock time and date at job start Fri Apr 10 2020 20:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.50019 * 300.06202 * 9 7 2 11 11 C 1.53033 * 109.49807 * 60.16484 * 9 7 2 12 12 C 1.53044 * 109.53835 * 181.31346 * 11 9 7 13 13 C 1.53188 * 109.31415 * 298.63220 * 12 11 9 14 14 N 1.46921 * 108.77350 * 54.63228 * 13 12 11 15 15 C 1.34781 * 120.62967 * 126.41665 * 14 13 12 16 16 O 1.21284 * 120.00082 * 179.97438 * 15 14 13 17 17 C 1.50701 * 119.99827 * 359.97415 * 15 14 13 18 18 H 1.08994 * 110.01891 * 300.06458 * 17 15 14 19 19 C 1.53876 * 110.03097 * 61.45871 * 17 15 14 20 20 C 1.54262 * 106.60022 * 119.28197 * 19 17 15 21 21 C 1.54896 * 104.19535 * 23.60784 * 20 19 17 22 22 H 1.09002 * 110.75031 * 80.55896 * 21 20 19 23 23 C 1.50699 * 110.75706 * 203.74160 * 21 20 19 24 24 O 1.20825 * 119.99892 * 118.54923 * 23 21 20 25 25 O 1.34232 * 120.00163 * 298.54816 * 23 21 20 26 26 C 1.54269 * 110.02954 * 178.62283 * 17 15 14 27 27 C 1.46925 * 118.74138 * 306.39463 * 14 13 12 28 28 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46153 * 301.33469 * 11 9 7 30 30 H 1.09000 * 109.46329 * 61.29123 * 11 9 7 31 31 H 1.09003 * 109.49796 * 178.68154 * 12 11 9 32 32 H 1.08996 * 109.49670 * 58.58487 * 12 11 9 33 33 H 1.09005 * 109.58793 * 294.85094 * 13 12 11 34 34 H 1.08993 * 109.59001 * 174.42221 * 13 12 11 35 35 H 1.08998 * 110.03016 * 238.56728 * 19 17 15 36 36 H 1.09000 * 110.03307 * 359.97438 * 19 17 15 37 37 H 1.08996 * 110.48691 * 142.28610 * 20 19 17 38 38 H 1.09001 * 110.48650 * 264.93213 * 20 19 17 39 39 H 0.96703 * 117.00086 * 179.97438 * 25 23 21 40 40 H 1.08997 * 110.48841 * 335.78211 * 26 17 15 41 41 H 1.09000 * 110.48526 * 98.42753 * 26 17 15 42 42 H 1.09005 * 109.58287 * 293.81792 * 27 14 13 43 43 H 1.09005 * 109.58994 * 173.39614 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6230 -2.5567 0.8895 11 6 0.3746 -2.5829 -1.2512 12 6 -0.4159 -3.8933 -1.2358 13 6 0.5601 -5.0739 -1.2492 14 7 1.5002 -4.9230 -0.1302 15 6 1.6754 -5.9208 0.7588 16 8 2.4547 -5.7842 1.6780 17 6 0.9029 -7.2063 0.6106 18 1 -0.1675 -7.0057 0.6559 19 6 1.2564 -7.8826 -0.7256 20 6 1.8598 -9.2588 -0.3769 21 6 1.2905 -9.5783 1.0278 22 1 0.2748 -9.9669 0.9536 23 6 2.1808 -10.5520 1.7561 24 8 2.7070 -10.2290 2.7946 25 8 2.3891 -11.7781 1.2511 26 6 1.3039 -8.1952 1.7247 27 6 2.2460 -3.6640 0.0011 28 1 -0.4850 0.8401 0.0004 29 1 -0.3179 -1.7413 -1.2666 30 1 1.0057 -2.5499 -2.1393 31 1 -1.0574 -3.9416 -2.1157 32 1 -1.0286 -3.9380 -0.3354 33 1 1.1105 -5.0825 -2.1900 34 1 0.0071 -6.0066 -1.1385 35 1 0.3574 -8.0110 -1.3284 36 1 1.9864 -7.2808 -1.2670 37 1 1.5389 -10.0100 -1.0985 38 1 2.9478 -9.2009 -0.3434 39 1 2.9681 -12.3674 1.7537 40 1 2.3020 -7.9655 2.0975 41 1 0.5771 -8.1701 2.5367 42 1 2.9338 -3.5576 -0.8378 43 1 2.8052 -3.6664 0.9368 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:11 Heat of formation + Delta-G solvation = -147.722573 kcal Electronic energy + Delta-G solvation = -24521.324503 eV Core-core repulsion = 20951.306760 eV Total energy + Delta-G solvation = -3570.017744 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.83345 -39.87115 -37.51682 -36.51723 -36.22652 -33.54026 -31.43655 -30.74983 -29.48671 -28.99631 -25.18471 -24.87684 -23.48789 -21.70862 -21.41152 -20.41959 -19.41603 -18.55449 -18.05315 -17.20077 -16.54745 -16.38815 -16.13703 -15.34121 -15.15884 -14.69229 -14.12468 -13.95284 -13.62429 -13.50847 -13.22045 -12.85475 -12.68890 -12.46564 -12.11679 -11.92540 -11.82521 -11.71508 -11.41996 -11.36095 -11.03663 -10.96471 -10.89271 -10.79188 -10.75390 -10.58924 -10.29991 -9.95895 -9.80136 -9.46699 -9.23487 -8.83986 -8.39131 -7.89934 -6.02728 -4.09782 2.00471 2.78060 3.03824 3.31127 3.35480 3.38229 3.53970 4.16938 4.26591 4.42120 4.60105 4.91704 5.02390 5.12278 5.16913 5.23758 5.26693 5.33462 5.36741 5.49045 5.62023 5.66651 5.73576 5.78654 5.90462 6.05138 6.10947 6.22818 6.31608 6.33947 6.39490 6.47303 6.65433 6.80288 6.97135 7.15667 7.32287 7.67960 7.68239 7.91020 8.01745 8.06488 8.36765 8.65504 8.93766 9.55104 11.02817 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.034308 B = 0.003273 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.934635 B = 8553.567024 C = 9009.737557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.136 4.136 13 C 0.107 3.893 14 N -0.602 5.602 15 C 0.513 3.487 16 O -0.547 6.547 17 C -0.114 4.114 18 H 0.102 0.898 19 C -0.116 4.116 20 C -0.109 4.109 21 C -0.089 4.089 22 H 0.116 0.884 23 C 0.484 3.516 24 O -0.508 6.508 25 O -0.518 6.518 26 C -0.095 4.095 27 C 0.117 3.883 28 H 0.261 0.739 29 H 0.095 0.905 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.408 0.592 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.605 -20.514 -4.211 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.174 4.174 13 C -0.016 4.016 14 N -0.333 5.333 15 C 0.300 3.700 16 O -0.425 6.425 17 C -0.135 4.135 18 H 0.120 0.880 19 C -0.154 4.154 20 C -0.146 4.146 21 C -0.108 4.108 22 H 0.134 0.866 23 C 0.326 3.674 24 O -0.395 6.395 25 O -0.330 6.330 26 C -0.132 4.132 27 C -0.004 4.004 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.266 0.734 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.449 -19.930 -3.668 20.316 hybrid contribution 0.665 0.587 0.259 0.924 sum -0.784 -19.343 -3.408 19.656 Atomic orbital electron populations 1.69862 1.05896 1.26590 1.50465 1.24936 0.94861 0.99074 0.94919 0.86638 0.79593 0.82978 0.78686 1.20267 1.21312 1.20203 1.21049 0.92966 0.90326 1.51023 0.92546 1.18957 0.92958 0.91155 0.94772 0.95279 1.21628 0.99448 0.95392 0.98576 1.22017 0.97692 0.96780 1.00937 1.21846 0.91444 0.99147 0.89163 1.48263 1.42168 1.15964 1.26955 1.20358 0.82902 0.84813 0.81903 1.90668 1.37938 1.81359 1.32565 1.21921 1.01318 0.93796 0.96490 0.88035 1.22254 1.01783 0.95347 0.95978 1.22333 1.01006 0.97416 0.93868 1.22066 0.98804 0.93416 0.96473 0.86607 1.23415 0.79605 0.80949 0.83411 1.90758 1.47666 1.77296 1.23779 1.84544 1.66367 1.25993 1.56124 1.22263 1.05488 0.89093 0.96404 1.22000 0.95075 0.81911 1.01443 0.92920 0.88683 0.94608 0.92489 0.92394 0.91973 0.90789 0.90163 0.90423 0.89973 0.90924 0.73370 0.88071 0.90383 0.92776 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -13.93 8.56 -34.44 -0.29 -14.23 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.04 0.99 2.25 -91.66 -0.21 0.79 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.47 4.96 -26.69 -0.13 -2.60 16 12 C -0.14 -2.32 6.08 -26.61 -0.16 -2.48 16 13 C 0.11 1.55 5.30 -3.72 -0.02 1.53 16 14 N -0.60 -10.77 2.94 -172.77 -0.51 -11.28 16 15 C 0.51 9.01 6.87 -10.98 -0.08 8.94 16 16 O -0.55 -11.86 14.83 5.55 0.08 -11.78 16 17 C -0.11 -1.39 2.42 -90.65 -0.22 -1.61 16 18 H 0.10 1.08 7.70 -51.93 -0.40 0.68 16 19 C -0.12 -1.08 4.80 -25.61 -0.12 -1.20 16 20 C -0.11 -0.92 6.25 -25.07 -0.16 -1.07 16 21 C -0.09 -0.82 3.40 -89.78 -0.31 -1.13 16 22 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 23 C 0.48 5.14 7.63 36.00 0.27 5.41 16 24 O -0.51 -7.36 16.55 -18.75 -0.31 -7.67 16 25 O -0.52 -3.94 13.41 -39.26 -0.53 -4.47 16 26 C -0.09 -1.18 5.17 -25.07 -0.13 -1.31 16 27 C 0.12 2.51 5.65 -3.71 -0.02 2.49 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.09 2.38 6.05 -51.93 -0.31 2.07 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.83 4.75 -51.93 -0.25 0.58 16 35 H 0.08 0.56 7.67 -51.93 -0.40 0.16 16 36 H 0.08 0.82 7.08 -51.93 -0.37 0.45 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 39 H 0.41 1.50 9.10 45.56 0.41 1.92 16 40 H 0.10 1.62 6.28 -51.93 -0.33 1.29 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.08 1.84 7.01 -51.93 -0.36 1.48 16 LS Contribution 337.56 15.07 5.09 5.09 Total: -1.00 -33.12 337.56 -8.00 -41.12 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.77 Total: 1.99 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.67 Total: -4.84 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.12 Total: -35.53 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.75 Total: -23.91 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.12 -8.00 -41.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.606 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds