Wall clock time and date at job start Fri Apr 10 2020 20:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.50019 * 300.06202 * 9 7 2 11 11 C 1.53033 * 109.49807 * 60.16484 * 9 7 2 12 12 C 1.53044 * 109.53835 * 181.31346 * 11 9 7 13 13 C 1.53188 * 109.31415 * 298.63220 * 12 11 9 14 14 N 1.46921 * 108.77350 * 54.63228 * 13 12 11 15 15 C 1.34781 * 120.62967 * 126.41665 * 14 13 12 16 16 O 1.21284 * 120.00082 * 179.97438 * 15 14 13 17 17 C 1.50701 * 119.99827 * 359.97415 * 15 14 13 18 18 H 1.08994 * 110.01891 * 300.06458 * 17 15 14 19 19 C 1.53876 * 110.03097 * 61.45871 * 17 15 14 20 20 C 1.54262 * 106.60022 * 119.28197 * 19 17 15 21 21 C 1.54896 * 104.19535 * 23.60784 * 20 19 17 22 22 H 1.09002 * 110.75031 * 80.55896 * 21 20 19 23 23 C 1.50699 * 110.75706 * 203.74160 * 21 20 19 24 24 O 1.20825 * 119.99892 * 118.54923 * 23 21 20 25 25 O 1.34232 * 120.00163 * 298.54816 * 23 21 20 26 26 C 1.54269 * 110.02954 * 178.62283 * 17 15 14 27 27 C 1.46925 * 118.74138 * 306.39463 * 14 13 12 28 28 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46153 * 301.33469 * 11 9 7 30 30 H 1.09000 * 109.46329 * 61.29123 * 11 9 7 31 31 H 1.09003 * 109.49796 * 178.68154 * 12 11 9 32 32 H 1.08996 * 109.49670 * 58.58487 * 12 11 9 33 33 H 1.09005 * 109.58793 * 294.85094 * 13 12 11 34 34 H 1.08993 * 109.59001 * 174.42221 * 13 12 11 35 35 H 1.08998 * 110.03016 * 238.56728 * 19 17 15 36 36 H 1.09000 * 110.03307 * 359.97438 * 19 17 15 37 37 H 1.08996 * 110.48691 * 142.28610 * 20 19 17 38 38 H 1.09001 * 110.48650 * 264.93213 * 20 19 17 39 39 H 0.96703 * 117.00086 * 179.97438 * 25 23 21 40 40 H 1.08997 * 110.48841 * 335.78211 * 26 17 15 41 41 H 1.09000 * 110.48526 * 98.42753 * 26 17 15 42 42 H 1.09005 * 109.58287 * 293.81792 * 27 14 13 43 43 H 1.09005 * 109.58994 * 173.39614 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6230 -2.5567 0.8895 11 6 0.3746 -2.5829 -1.2512 12 6 -0.4159 -3.8933 -1.2358 13 6 0.5601 -5.0739 -1.2492 14 7 1.5002 -4.9230 -0.1302 15 6 1.6754 -5.9208 0.7588 16 8 2.4547 -5.7842 1.6780 17 6 0.9029 -7.2063 0.6106 18 1 -0.1675 -7.0057 0.6559 19 6 1.2564 -7.8826 -0.7256 20 6 1.8598 -9.2588 -0.3769 21 6 1.2905 -9.5783 1.0278 22 1 0.2748 -9.9669 0.9536 23 6 2.1808 -10.5520 1.7561 24 8 2.7070 -10.2290 2.7946 25 8 2.3891 -11.7781 1.2511 26 6 1.3039 -8.1952 1.7247 27 6 2.2460 -3.6640 0.0011 28 1 -0.4850 0.8401 0.0004 29 1 -0.3179 -1.7413 -1.2666 30 1 1.0057 -2.5499 -2.1393 31 1 -1.0574 -3.9416 -2.1157 32 1 -1.0286 -3.9380 -0.3354 33 1 1.1105 -5.0825 -2.1900 34 1 0.0071 -6.0066 -1.1385 35 1 0.3574 -8.0110 -1.3284 36 1 1.9864 -7.2808 -1.2670 37 1 1.5389 -10.0100 -1.0985 38 1 2.9478 -9.2009 -0.3434 39 1 2.9681 -12.3674 1.7537 40 1 2.3020 -7.9655 2.0975 41 1 0.5771 -8.1701 2.5367 42 1 2.9338 -3.5576 -0.8378 43 1 2.8052 -3.6664 0.9368 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:10 Heat of formation + Delta-G solvation = -170.115620 kcal Electronic energy + Delta-G solvation = -24522.295539 eV Core-core repulsion = 20951.306760 eV Total energy + Delta-G solvation = -3570.988779 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.80322 -41.03388 -38.74792 -37.80286 -37.04458 -35.37958 -33.11589 -32.20383 -30.70793 -29.80149 -27.06540 -26.30804 -24.49111 -23.28342 -22.52797 -21.30648 -20.74814 -19.82529 -18.98565 -18.49374 -18.08616 -17.47317 -17.22192 -16.67099 -16.61814 -16.09282 -15.49453 -15.09255 -15.01400 -14.63808 -14.57140 -14.40797 -14.02544 -13.76667 -13.57198 -13.20874 -12.87840 -12.81070 -12.60754 -12.57144 -12.54191 -12.28509 -12.15252 -11.89401 -11.87882 -11.80084 -11.68193 -11.58816 -11.40876 -11.18510 -10.84580 -10.60377 -10.41912 -9.46408 -8.11704 -6.26890 1.21349 1.40108 1.41715 1.49072 1.69023 2.01303 2.25757 2.43519 3.14603 3.31977 3.42406 3.74922 4.01992 4.14644 4.26087 4.29418 4.33750 4.39152 4.45220 4.49304 4.55507 4.59991 4.62773 4.73761 4.84976 4.89780 4.93018 5.01304 5.11494 5.14386 5.22070 5.26930 5.31346 5.34567 5.50437 5.60097 5.61478 5.64061 5.93869 6.14765 6.34582 6.61420 6.82558 7.01021 7.26738 7.41095 8.91687 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.034308 B = 0.003273 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.934635 B = 8553.567024 C = 9009.737557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.050 0.950 9 C 0.042 3.958 10 H -0.016 1.016 11 C -0.106 4.106 12 C -0.129 4.129 13 C 0.108 3.892 14 N -0.605 5.605 15 C 0.503 3.497 16 O -0.601 6.601 17 C -0.104 4.104 18 H 0.130 0.870 19 C -0.112 4.112 20 C -0.103 4.103 21 C -0.081 4.081 22 H 0.155 0.845 23 C 0.488 3.512 24 O -0.559 6.559 25 O -0.506 6.506 26 C -0.100 4.100 27 C 0.129 3.871 28 H 0.262 0.738 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.066 0.934 37 H 0.117 0.883 38 H 0.052 0.948 39 H 0.425 0.575 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.075 -22.890 -6.828 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.068 0.932 9 C 0.023 3.977 10 H 0.002 0.998 11 C -0.144 4.144 12 C -0.167 4.167 13 C -0.013 4.013 14 N -0.336 5.336 15 C 0.293 3.707 16 O -0.483 6.483 17 C -0.125 4.125 18 H 0.148 0.852 19 C -0.150 4.150 20 C -0.140 4.140 21 C -0.099 4.099 22 H 0.173 0.827 23 C 0.332 3.668 24 O -0.450 6.450 25 O -0.319 6.319 26 C -0.138 4.138 27 C 0.006 3.994 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.071 0.929 39 H 0.287 0.713 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.934 -22.351 -6.328 23.414 hybrid contribution 1.159 1.306 1.133 2.081 sum -1.776 -21.044 -5.195 21.749 Atomic orbital electron populations 1.69997 1.07027 1.27290 1.50791 1.25678 0.95718 1.02208 0.94545 0.85678 0.78480 0.79115 0.78783 1.19218 1.20621 1.20333 1.21433 0.93018 0.92109 1.51433 0.93191 1.18855 0.93128 0.91479 0.94220 0.99760 1.21423 0.98737 0.97371 0.96916 1.21940 0.97901 0.94898 1.01988 1.22141 0.90651 0.99918 0.88616 1.48336 1.42441 1.14548 1.28263 1.21469 0.82452 0.86252 0.80549 1.90647 1.40410 1.82527 1.34706 1.22004 1.01610 0.90493 0.98434 0.85191 1.22346 1.03503 0.94963 0.94151 1.22344 0.99892 0.97923 0.93840 1.22110 1.00614 0.91173 0.96026 0.82708 1.23720 0.78823 0.81672 0.82592 1.90755 1.49761 1.78332 1.26141 1.84494 1.66463 1.25078 1.55875 1.22184 1.02858 0.91695 0.97046 1.21517 0.94580 0.83259 1.00006 0.92887 0.92068 0.94414 0.88913 0.93709 0.89846 0.86036 0.85781 0.91504 0.86488 0.92862 0.71340 0.92631 0.90382 0.92180 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.46 11.32 21.45 0.24 -52.22 16 2 C 0.02 0.99 5.30 84.66 0.45 1.44 16 3 Si 0.95 44.06 29.54 68.60 2.03 46.09 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.54 -30.50 8.56 25.60 0.22 -30.28 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.04 2.16 2.25 -11.47 -0.03 2.13 16 10 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 11 C -0.11 -4.70 4.96 30.62 0.15 -4.55 16 12 C -0.13 -4.12 6.08 30.67 0.19 -3.93 16 13 C 0.11 2.75 5.30 86.36 0.46 3.21 16 14 N -0.60 -21.36 2.94 -818.90 -2.40 -23.77 16 15 C 0.50 17.70 6.87 87.66 0.60 18.31 16 16 O -0.60 -27.64 14.83 -3.04 -0.05 -27.69 16 17 C -0.10 -2.29 2.42 -10.81 -0.03 -2.31 16 18 H 0.13 2.17 7.70 -2.39 -0.02 2.15 16 19 C -0.11 -1.56 4.80 31.32 0.15 -1.41 16 20 C -0.10 -1.31 6.25 31.67 0.20 -1.12 16 21 C -0.08 -1.24 3.40 -10.25 -0.03 -1.28 16 22 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 23 C 0.49 9.59 7.63 71.24 0.54 10.13 16 24 O -0.56 -16.48 16.55 21.97 0.36 -16.11 16 25 O -0.51 -6.30 13.41 -51.43 -0.69 -6.99 16 26 C -0.10 -2.40 5.17 31.67 0.16 -2.23 16 27 C 0.13 5.79 5.65 86.36 0.49 6.28 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.56 16 29 H 0.06 3.13 6.05 -2.39 -0.01 3.12 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.12 1.99 4.75 -2.39 -0.01 1.97 16 35 H 0.12 0.75 7.67 -2.39 -0.02 0.73 16 36 H 0.07 1.14 7.08 -2.39 -0.02 1.13 16 37 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.05 0.90 8.04 -2.39 -0.02 0.88 16 39 H 0.43 2.19 9.10 -74.06 -0.67 1.51 16 40 H 0.05 1.88 6.28 -2.39 -0.02 1.87 16 41 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 42 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 43 H 0.05 2.32 7.01 -2.38 -0.02 2.31 16 Total: -1.00 -80.14 337.56 3.37 -76.77 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.35 Total: 9.53 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 3.52 Total: -5.61 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -2.16 Total: -75.98 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -0.37 Total: -50.80 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -80.14 3.37 -76.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.343 kcal (2) G-P(sol) polarization free energy of solvation -80.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds