Wall clock time and date at job start Fri Apr 10 2020 20:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 119.99656 * 2 1 4 4 H 1.48497 * 109.47477 * 270.00118 * 3 2 1 5 5 H 1.48497 * 109.47269 * 30.00467 * 3 2 1 6 6 H 1.48504 * 109.47063 * 150.00360 * 3 2 1 7 7 C 1.37872 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99712 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00355 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.52680 * 59.91863 * 9 7 2 11 11 C 1.53043 * 109.49722 * 299.83451 * 9 7 2 12 12 C 1.53037 * 109.53919 * 178.68474 * 11 9 7 13 13 C 1.53191 * 109.31499 * 61.36673 * 12 11 9 14 14 N 1.46925 * 108.77423 * 305.36620 * 13 12 11 15 15 C 1.34779 * 120.63041 * 233.62788 * 14 13 12 16 16 O 1.21283 * 119.99742 * 179.97438 * 15 14 13 17 17 C 1.50696 * 120.00186 * 359.97438 * 15 14 13 18 18 H 1.08998 * 110.01795 * 300.06404 * 17 15 14 19 19 C 1.53875 * 110.03115 * 61.44983 * 17 15 14 20 20 C 1.54273 * 106.59719 * 119.28403 * 19 17 15 21 21 C 1.54892 * 104.19444 * 23.61446 * 20 19 17 22 22 H 1.08998 * 110.75853 * 80.36578 * 21 20 19 23 23 C 1.50699 * 110.75693 * 203.74362 * 21 20 19 24 24 O 1.20823 * 120.00255 * 118.54257 * 23 21 20 25 25 O 1.34233 * 119.99382 * 298.54492 * 23 21 20 26 26 C 1.54266 * 110.03378 * 178.61932 * 17 15 14 27 27 C 1.46926 * 118.73914 * 53.60547 * 14 13 12 28 28 H 0.96992 * 120.00501 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.45405 * 58.66267 * 11 9 7 30 30 H 1.09002 * 109.44862 * 298.69889 * 11 9 7 31 31 H 1.08997 * 109.49928 * 301.41588 * 12 11 9 32 32 H 1.09005 * 109.52588 * 181.33557 * 12 11 9 33 33 H 1.08998 * 109.59071 * 185.58119 * 13 12 11 34 34 H 1.09005 * 109.58843 * 65.15147 * 13 12 11 35 35 H 1.08997 * 110.03647 * 238.56900 * 19 17 15 36 36 H 1.09007 * 110.03489 * 0.02562 * 19 17 15 37 37 H 1.09002 * 110.48401 * 142.28556 * 20 19 17 38 38 H 1.08994 * 110.48689 * 264.93170 * 20 19 17 39 39 H 0.96703 * 116.99226 * 180.02562 * 25 23 21 40 40 H 1.08993 * 110.48721 * 335.78587 * 26 17 15 41 41 H 1.08999 * 110.48449 * 98.42686 * 26 17 15 42 42 H 1.09006 * 109.58406 * 66.18027 * 27 14 13 43 43 H 1.09002 * 109.59019 * 186.60016 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 1 0.6233 -2.5566 -0.8909 11 6 0.3736 -2.5835 1.2494 12 6 -0.4167 -3.8939 1.2328 13 6 0.5593 -5.0745 1.2464 14 7 1.5002 -4.9231 0.1281 15 6 1.6754 -5.9202 -0.7617 16 8 2.4547 -5.7827 -1.6808 17 6 0.9030 -7.2057 -0.6146 18 1 1.1332 -7.6718 0.3434 19 6 -0.6071 -6.9279 -0.7161 20 6 -1.1222 -7.7305 -1.9288 21 6 -0.0877 -8.8710 -2.0967 22 1 -0.2835 -9.6774 -1.3899 23 6 -0.0875 -9.3877 -3.5123 24 8 0.9130 -9.3069 -4.1848 25 8 -1.1990 -9.9378 -4.0260 26 6 1.2528 -8.1674 -1.7690 27 6 2.2460 -3.6640 -0.0021 28 1 -0.4850 0.8399 0.0004 29 1 -0.3188 -1.7419 1.2646 30 1 1.0043 -2.5510 2.1378 31 1 -1.0288 -3.9382 0.3320 32 1 -1.0593 -3.9429 2.1120 33 1 0.0063 -6.0072 1.1349 34 1 1.1090 -5.0835 2.1877 35 1 -1.1098 -7.2600 0.1922 36 1 -0.7812 -5.8633 -0.8722 37 1 -2.1113 -8.1399 -1.7229 38 1 -1.1460 -7.1028 -2.8194 39 1 -1.1503 -10.2554 -4.9381 40 1 1.6126 -7.6103 -2.6339 41 1 1.9970 -8.8956 -1.4466 42 1 2.9332 -3.5579 0.8374 43 1 2.8060 -3.6659 -0.9373 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:14 Heat of formation + Delta-G solvation = -146.349534 kcal Electronic energy + Delta-G solvation = -24698.569471 eV Core-core repulsion = 21128.611267 eV Total energy + Delta-G solvation = -3569.958204 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.80987 -39.87093 -37.46087 -36.53151 -36.19541 -33.54014 -31.40709 -30.79312 -29.44934 -28.95050 -25.18217 -24.87133 -23.46110 -21.70587 -21.32541 -20.40891 -19.60272 -18.38854 -17.92149 -17.30974 -16.55517 -16.30861 -16.09570 -15.31954 -15.18354 -14.64035 -14.18667 -13.84668 -13.60223 -13.55391 -13.28308 -12.77691 -12.65294 -12.36397 -12.18276 -11.91269 -11.76730 -11.67460 -11.36878 -11.30974 -11.00102 -10.98615 -10.90676 -10.76919 -10.71822 -10.55076 -10.28094 -9.96601 -9.79576 -9.45706 -9.24184 -8.83381 -8.39654 -7.89572 -6.03169 -4.10070 2.04296 2.82113 3.03784 3.29570 3.36160 3.39085 3.54672 4.21069 4.31228 4.41896 4.63996 4.93521 5.06366 5.16832 5.18999 5.26657 5.27433 5.36580 5.38279 5.50692 5.62125 5.71517 5.78801 5.83306 5.96609 6.07816 6.11885 6.25988 6.32118 6.36377 6.40187 6.47080 6.65873 6.80243 6.97268 7.15469 7.31974 7.67872 7.72128 7.90569 8.01947 8.06250 8.36566 8.65777 8.93632 9.54940 11.02392 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.025856 B = 0.003522 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.678295 B = 7948.808362 C = 8146.542074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.103 3.897 14 N -0.602 5.602 15 C 0.513 3.487 16 O -0.547 6.547 17 C -0.113 4.113 18 H 0.099 0.901 19 C -0.119 4.119 20 C -0.109 4.109 21 C -0.088 4.088 22 H 0.115 0.885 23 C 0.485 3.515 24 O -0.509 6.509 25 O -0.518 6.518 26 C -0.095 4.095 27 C 0.116 3.884 28 H 0.260 0.740 29 H 0.095 0.905 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.408 0.592 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.726 -18.421 1.035 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.173 4.173 13 C -0.021 4.021 14 N -0.333 5.333 15 C 0.300 3.700 16 O -0.425 6.425 17 C -0.134 4.134 18 H 0.117 0.883 19 C -0.156 4.156 20 C -0.147 4.147 21 C -0.108 4.108 22 H 0.133 0.867 23 C 0.327 3.673 24 O -0.396 6.396 25 O -0.330 6.330 26 C -0.132 4.132 27 C -0.005 4.005 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.266 0.734 40 H 0.120 0.880 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.190 -18.031 0.786 18.780 hybrid contribution 0.409 0.729 -0.462 0.955 sum -4.781 -17.302 0.324 17.953 Atomic orbital electron populations 1.69868 1.05881 1.26469 1.50583 1.24930 0.94861 0.99073 0.94927 0.86579 0.79851 0.83325 0.78166 1.20666 1.21259 1.19884 1.21082 0.93009 0.90314 1.50863 0.92503 1.18963 0.92954 0.91176 0.94756 0.95323 1.21625 0.99447 0.95383 0.98580 1.22004 0.97633 0.96717 1.00909 1.21899 0.91535 0.99440 0.89177 1.48259 1.42178 1.16038 1.26858 1.20372 0.82762 0.84944 0.81945 1.90667 1.37899 1.81412 1.32567 1.21916 0.95979 0.94667 1.00850 0.88269 1.22300 0.92992 1.01964 0.98370 1.22344 0.97732 0.95170 0.99415 1.22058 0.99436 0.99507 0.89750 0.86669 1.23402 0.80036 0.73765 0.90116 1.90752 1.34419 1.52879 1.61545 1.84547 1.40423 1.72400 1.35597 1.22263 0.94196 0.97298 0.99492 1.22001 0.95093 0.81908 1.01452 0.92993 0.88673 0.94607 0.92371 0.92486 0.90481 0.92085 0.90171 0.89888 0.89944 0.90789 0.73364 0.88038 0.90515 0.92759 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.75 11.32 55.43 0.63 -24.12 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.87 8.56 -34.44 -0.29 -14.16 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.45 4.96 -26.69 -0.13 -2.58 16 12 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 13 C 0.10 1.49 5.58 -3.71 -0.02 1.47 16 14 N -0.60 -10.77 2.94 -172.77 -0.51 -11.28 16 15 C 0.51 9.01 6.87 -10.99 -0.08 8.94 16 16 O -0.55 -11.87 14.83 5.56 0.08 -11.78 16 17 C -0.11 -1.38 2.43 -90.66 -0.22 -1.60 16 18 H 0.10 0.97 7.95 -51.93 -0.41 0.56 16 19 C -0.12 -1.24 4.66 -25.61 -0.12 -1.35 16 20 C -0.11 -1.04 6.25 -25.07 -0.16 -1.20 16 21 C -0.09 -0.86 3.40 -89.77 -0.31 -1.16 16 22 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 23 C 0.48 5.38 7.63 36.01 0.27 5.66 16 24 O -0.51 -7.57 16.55 -18.75 -0.31 -7.88 16 25 O -0.52 -4.24 13.41 -39.27 -0.53 -4.76 16 26 C -0.09 -1.18 5.17 -25.07 -0.13 -1.31 16 27 C 0.12 2.50 5.66 -3.71 -0.02 2.48 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 29 H 0.10 2.37 6.05 -51.93 -0.31 2.06 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.02 7.70 -51.93 -0.40 0.62 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.86 4.28 -51.93 -0.22 0.64 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.62 7.53 -51.93 -0.39 0.23 16 36 H 0.08 1.07 6.64 -51.93 -0.34 0.72 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 39 H 0.41 1.73 9.10 45.56 0.41 2.14 16 40 H 0.10 1.66 6.28 -51.93 -0.33 1.33 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.08 1.84 7.01 -51.93 -0.36 1.47 16 LS Contribution 336.49 15.07 5.07 5.07 Total: -1.00 -32.98 336.49 -7.95 -40.93 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.70 Total: 2.62 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.66 Total: -4.84 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.12 Total: -35.40 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.75 Total: -24.43 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.98 -7.95 -40.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.424 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds