Wall clock time and date at job start Fri Apr 10 2020 20:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 119.99656 * 2 1 4 4 H 1.48497 * 109.47477 * 270.00118 * 3 2 1 5 5 H 1.48497 * 109.47269 * 30.00467 * 3 2 1 6 6 H 1.48504 * 109.47063 * 150.00360 * 3 2 1 7 7 C 1.37872 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99712 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00355 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.52680 * 59.91863 * 9 7 2 11 11 C 1.53043 * 109.49722 * 299.83451 * 9 7 2 12 12 C 1.53037 * 109.53919 * 178.68474 * 11 9 7 13 13 C 1.53191 * 109.31499 * 61.36673 * 12 11 9 14 14 N 1.46925 * 108.77423 * 305.36620 * 13 12 11 15 15 C 1.34779 * 120.63041 * 233.62788 * 14 13 12 16 16 O 1.21283 * 119.99742 * 179.97438 * 15 14 13 17 17 C 1.50696 * 120.00186 * 359.97438 * 15 14 13 18 18 H 1.08998 * 110.01795 * 300.06404 * 17 15 14 19 19 C 1.53875 * 110.03115 * 61.44983 * 17 15 14 20 20 C 1.54273 * 106.59719 * 119.28403 * 19 17 15 21 21 C 1.54892 * 104.19444 * 23.61446 * 20 19 17 22 22 H 1.08998 * 110.75853 * 80.36578 * 21 20 19 23 23 C 1.50699 * 110.75693 * 203.74362 * 21 20 19 24 24 O 1.20823 * 120.00255 * 118.54257 * 23 21 20 25 25 O 1.34233 * 119.99382 * 298.54492 * 23 21 20 26 26 C 1.54266 * 110.03378 * 178.61932 * 17 15 14 27 27 C 1.46926 * 118.73914 * 53.60547 * 14 13 12 28 28 H 0.96992 * 120.00501 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.45405 * 58.66267 * 11 9 7 30 30 H 1.09002 * 109.44862 * 298.69889 * 11 9 7 31 31 H 1.08997 * 109.49928 * 301.41588 * 12 11 9 32 32 H 1.09005 * 109.52588 * 181.33557 * 12 11 9 33 33 H 1.08998 * 109.59071 * 185.58119 * 13 12 11 34 34 H 1.09005 * 109.58843 * 65.15147 * 13 12 11 35 35 H 1.08997 * 110.03647 * 238.56900 * 19 17 15 36 36 H 1.09007 * 110.03489 * 0.02562 * 19 17 15 37 37 H 1.09002 * 110.48401 * 142.28556 * 20 19 17 38 38 H 1.08994 * 110.48689 * 264.93170 * 20 19 17 39 39 H 0.96703 * 116.99226 * 180.02562 * 25 23 21 40 40 H 1.08993 * 110.48721 * 335.78587 * 26 17 15 41 41 H 1.08999 * 110.48449 * 98.42686 * 26 17 15 42 42 H 1.09006 * 109.58406 * 66.18027 * 27 14 13 43 43 H 1.09002 * 109.59019 * 186.60016 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 1 0.6233 -2.5566 -0.8909 11 6 0.3736 -2.5835 1.2494 12 6 -0.4167 -3.8939 1.2328 13 6 0.5593 -5.0745 1.2464 14 7 1.5002 -4.9231 0.1281 15 6 1.6754 -5.9202 -0.7617 16 8 2.4547 -5.7827 -1.6808 17 6 0.9030 -7.2057 -0.6146 18 1 1.1332 -7.6718 0.3434 19 6 -0.6071 -6.9279 -0.7161 20 6 -1.1222 -7.7305 -1.9288 21 6 -0.0877 -8.8710 -2.0967 22 1 -0.2835 -9.6774 -1.3899 23 6 -0.0875 -9.3877 -3.5123 24 8 0.9130 -9.3069 -4.1848 25 8 -1.1990 -9.9378 -4.0260 26 6 1.2528 -8.1674 -1.7690 27 6 2.2460 -3.6640 -0.0021 28 1 -0.4850 0.8399 0.0004 29 1 -0.3188 -1.7419 1.2646 30 1 1.0043 -2.5510 2.1378 31 1 -1.0288 -3.9382 0.3320 32 1 -1.0593 -3.9429 2.1120 33 1 0.0063 -6.0072 1.1349 34 1 1.1090 -5.0835 2.1877 35 1 -1.1098 -7.2600 0.1922 36 1 -0.7812 -5.8633 -0.8722 37 1 -2.1113 -8.1399 -1.7229 38 1 -1.1460 -7.1028 -2.8194 39 1 -1.1503 -10.2554 -4.9381 40 1 1.6126 -7.6103 -2.6339 41 1 1.9970 -8.8956 -1.4466 42 1 2.9332 -3.5579 0.8374 43 1 2.8060 -3.6659 -0.9373 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:13 Heat of formation + Delta-G solvation = -168.694810 kcal Electronic energy + Delta-G solvation = -24699.538435 eV Core-core repulsion = 21128.611267 eV Total energy + Delta-G solvation = -3570.927168 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.82017 -41.04159 -38.71695 -37.83836 -37.05160 -35.38019 -33.09422 -32.24088 -30.69596 -29.81315 -27.06620 -26.30861 -24.49818 -23.29295 -22.42418 -21.44743 -20.89079 -19.59233 -19.00027 -18.57363 -18.09968 -17.47244 -17.18288 -16.75160 -16.48219 -16.15405 -15.55296 -15.15107 -14.89231 -14.74590 -14.59054 -14.33426 -14.05224 -13.72413 -13.60028 -13.21180 -12.88609 -12.80275 -12.62947 -12.56724 -12.51893 -12.25818 -12.15247 -11.91070 -11.85691 -11.81977 -11.71104 -11.58588 -11.40004 -11.15861 -10.84280 -10.60711 -10.42272 -9.45861 -8.11804 -6.26842 1.20664 1.39278 1.40735 1.50468 1.68739 2.01831 2.26145 2.43465 3.14573 3.31215 3.42650 3.73935 4.02920 4.14560 4.25552 4.30425 4.32994 4.40018 4.42809 4.48021 4.54457 4.58972 4.62898 4.72054 4.86040 4.90548 4.92944 5.01042 5.08430 5.15162 5.19362 5.29535 5.30276 5.35229 5.50574 5.60554 5.62205 5.63723 5.93989 6.14906 6.34803 6.61928 6.82568 7.00345 7.27109 7.41176 8.91702 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.025856 B = 0.003522 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.678295 B = 7948.808362 C = 8146.542074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.018 3.982 3 Si 0.954 3.046 4 H -0.281 1.281 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.541 4.541 8 H 0.049 0.951 9 C 0.043 3.957 10 H -0.016 1.016 11 C -0.106 4.106 12 C -0.127 4.127 13 C 0.103 3.897 14 N -0.605 5.605 15 C 0.502 3.498 16 O -0.601 6.601 17 C -0.102 4.102 18 H 0.142 0.858 19 C -0.117 4.117 20 C -0.105 4.105 21 C -0.079 4.079 22 H 0.160 0.840 23 C 0.487 3.513 24 O -0.558 6.558 25 O -0.507 6.507 26 C -0.099 4.099 27 C 0.129 3.871 28 H 0.262 0.738 29 H 0.061 0.939 30 H 0.036 0.964 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.054 0.946 37 H 0.116 0.884 38 H 0.045 0.955 39 H 0.425 0.575 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.467 -20.824 3.430 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.181 4.181 3 Si 0.779 3.221 4 H -0.207 1.207 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.579 4.579 8 H 0.067 0.933 9 C 0.023 3.977 10 H 0.002 0.998 11 C -0.144 4.144 12 C -0.165 4.165 13 C -0.018 4.018 14 N -0.336 5.336 15 C 0.292 3.708 16 O -0.483 6.483 17 C -0.122 4.122 18 H 0.160 0.840 19 C -0.154 4.154 20 C -0.143 4.143 21 C -0.098 4.098 22 H 0.178 0.822 23 C 0.331 3.669 24 O -0.449 6.449 25 O -0.320 6.320 26 C -0.137 4.137 27 C 0.006 3.994 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.142 0.858 34 H 0.099 0.901 35 H 0.146 0.854 36 H 0.073 0.927 37 H 0.134 0.866 38 H 0.064 0.936 39 H 0.286 0.714 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.978 -20.460 3.197 21.852 hybrid contribution 0.933 1.489 -1.306 2.189 sum -6.045 -18.971 1.891 20.000 Atomic orbital electron populations 1.69999 1.06986 1.27202 1.50845 1.25663 0.95721 1.02165 0.94555 0.85625 0.78905 0.79495 0.78043 1.20728 1.20322 1.19239 1.21454 0.93004 0.92119 1.51327 0.93252 1.18858 0.93118 0.91463 0.94219 0.99813 1.21417 0.98721 0.97424 0.96845 1.21914 0.97806 0.94683 1.02065 1.22181 0.90758 1.00313 0.88522 1.48334 1.42447 1.14645 1.28157 1.21494 0.82271 0.86446 0.80584 1.90647 1.40365 1.82649 1.34642 1.22016 0.96353 0.91203 1.02670 0.83983 1.22376 0.91614 1.00605 1.00844 1.22344 0.99321 0.94612 0.97998 1.22115 0.97388 1.00504 0.89751 0.82223 1.23743 0.79735 0.72864 0.90539 1.90749 1.36334 1.54985 1.62860 1.84499 1.38815 1.71632 1.37038 1.22197 0.96306 0.97390 0.97800 1.21519 0.94610 0.83304 0.99982 0.92908 0.92034 0.94509 0.93465 0.88918 0.85787 0.90150 0.85439 0.92676 0.86583 0.93615 0.71359 0.93022 0.89463 0.92196 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.24 11.32 21.45 0.24 -52.00 16 2 C 0.02 1.01 5.30 84.65 0.45 1.46 16 3 Si 0.95 44.08 29.54 68.60 2.03 46.11 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.54 -30.45 8.56 25.60 0.22 -30.23 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 9 C 0.04 2.17 2.25 -11.46 -0.03 2.14 16 10 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 11 C -0.11 -4.67 4.96 30.62 0.15 -4.52 16 12 C -0.13 -3.99 6.08 30.67 0.19 -3.80 16 13 C 0.10 2.64 5.58 86.36 0.48 3.13 16 14 N -0.60 -21.41 2.94 -818.89 -2.40 -23.82 16 15 C 0.50 17.66 6.87 87.66 0.60 18.26 16 16 O -0.60 -27.64 14.83 -3.04 -0.05 -27.68 16 17 C -0.10 -2.19 2.43 -10.82 -0.03 -2.22 16 18 H 0.14 1.94 7.95 -2.39 -0.02 1.92 16 19 C -0.12 -1.97 4.66 31.32 0.15 -1.82 16 20 C -0.11 -1.67 6.25 31.67 0.20 -1.47 16 21 C -0.08 -1.28 3.40 -10.25 -0.03 -1.31 16 22 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 23 C 0.49 10.12 7.63 71.24 0.54 10.67 16 24 O -0.56 -16.92 16.55 21.97 0.36 -16.55 16 25 O -0.51 -7.04 13.41 -51.45 -0.69 -7.73 16 26 C -0.10 -2.34 5.17 31.67 0.16 -2.18 16 27 C 0.13 5.78 5.66 86.36 0.49 6.27 16 28 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.06 3.14 6.05 -2.39 -0.01 3.12 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.60 7.70 -2.39 -0.02 1.58 16 32 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.12 2.04 4.28 -2.39 -0.01 2.03 16 34 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.13 1.03 7.53 -2.39 -0.02 1.01 16 36 H 0.05 1.29 6.64 -2.38 -0.02 1.28 16 37 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.04 0.98 8.04 -2.39 -0.02 0.96 16 39 H 0.43 2.78 9.10 -74.06 -0.67 2.10 16 40 H 0.05 1.78 6.28 -2.39 -0.02 1.76 16 41 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 43 H 0.05 2.31 7.01 -2.39 -0.02 2.30 16 Total: -1.00 -80.27 336.49 3.39 -76.89 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.35 Total: 10.42 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 3.54 Total: -5.63 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -2.16 Total: -75.81 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -0.37 Total: -51.97 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -80.27 3.39 -76.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.809 kcal (2) G-P(sol) polarization free energy of solvation -80.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds